Strain Fitness in Serratia liquefaciens MT49 around IAI46_01995

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01990 and IAI46_01995 overlap by 19 nucleotidesIAI46_01995 and IAI46_02000 overlap by 4 nucleotides IAI46_01990: IAI46_01990 - efflux RND transporter periplasmic adaptor subunit, at 426,799 to 427,770 _01990 IAI46_01995: IAI46_01995 - ABC transporter permease, at 427,752 to 428,906 _01995 IAI46_02000: IAI46_02000 - ABC transporter permease, at 428,903 to 430,045 _02000 Position (kb) 427 428 429Strain fitness (log2 ratio) -1 0 1 2at 426.777 kb on + strandat 426.824 kb on + strandat 426.937 kb on - strand, within IAI46_01990at 427.175 kb on - strand, within IAI46_01990at 427.209 kb on + strand, within IAI46_01990at 427.209 kb on + strand, within IAI46_01990at 427.210 kb on - strand, within IAI46_01990at 427.323 kb on - strand, within IAI46_01990at 427.333 kb on + strand, within IAI46_01990at 427.333 kb on + strand, within IAI46_01990at 427.333 kb on + strand, within IAI46_01990at 427.333 kb on + strand, within IAI46_01990at 427.333 kb on + strand, within IAI46_01990at 427.334 kb on - strand, within IAI46_01990at 427.507 kb on + strand, within IAI46_01990at 427.519 kb on - strand, within IAI46_01990at 427.533 kb on + strand, within IAI46_01990at 427.618 kb on + strand, within IAI46_01990at 427.618 kb on + strand, within IAI46_01990at 427.618 kb on + strand, within IAI46_01990at 427.619 kb on - strand, within IAI46_01990at 427.619 kb on - strand, within IAI46_01990at 427.619 kb on - strand, within IAI46_01990at 427.619 kb on - strand, within IAI46_01990at 427.620 kb on + strand, within IAI46_01990at 427.620 kb on + strand, within IAI46_01990at 427.621 kb on - strand, within IAI46_01990at 427.639 kb on + strand, within IAI46_01990at 427.639 kb on + strand, within IAI46_01990at 427.640 kb on - strand, within IAI46_01990at 427.751 kb on + strandat 427.751 kb on + strandat 427.751 kb on + strandat 427.752 kb on - strandat 427.752 kb on - strandat 427.752 kb on - strandat 427.752 kb on - strandat 427.752 kb on - strandat 427.752 kb on - strandat 427.752 kb on - strandat 427.752 kb on - strandat 427.752 kb on - strandat 427.758 kb on - strandat 427.758 kb on - strandat 427.768 kb on + strandat 427.769 kb on - strandat 427.769 kb on - strandat 428.064 kb on + strand, within IAI46_01995at 428.065 kb on - strand, within IAI46_01995at 428.076 kb on + strand, within IAI46_01995at 428.076 kb on + strand, within IAI46_01995at 428.076 kb on + strand, within IAI46_01995at 428.077 kb on - strand, within IAI46_01995at 428.136 kb on + strand, within IAI46_01995at 428.137 kb on - strand, within IAI46_01995at 428.137 kb on - strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.140 kb on - strand, within IAI46_01995at 428.140 kb on - strand, within IAI46_01995at 428.140 kb on - strand, within IAI46_01995at 428.169 kb on + strand, within IAI46_01995at 428.170 kb on - strand, within IAI46_01995at 428.170 kb on - strand, within IAI46_01995at 428.283 kb on + strand, within IAI46_01995at 428.293 kb on + strand, within IAI46_01995at 428.313 kb on + strand, within IAI46_01995at 428.314 kb on - strand, within IAI46_01995at 428.314 kb on - strand, within IAI46_01995at 428.315 kb on + strand, within IAI46_01995at 428.315 kb on + strand, within IAI46_01995at 428.315 kb on + strand, within IAI46_01995at 428.316 kb on - strand, within IAI46_01995at 428.316 kb on - strand, within IAI46_01995at 428.319 kb on + strand, within IAI46_01995at 428.319 kb on + strand, within IAI46_01995at 428.319 kb on + strand, within IAI46_01995at 428.319 kb on + strand, within IAI46_01995at 428.323 kb on - strand, within IAI46_01995at 428.382 kb on + strand, within IAI46_01995at 428.382 kb on + strand, within IAI46_01995at 428.383 kb on - strand, within IAI46_01995at 428.383 kb on - strand, within IAI46_01995at 428.399 kb on + strand, within IAI46_01995at 428.400 kb on - strand, within IAI46_01995at 428.457 kb on + strand, within IAI46_01995at 428.457 kb on + strand, within IAI46_01995at 428.457 kb on + strand, within IAI46_01995at 428.464 kb on + strand, within IAI46_01995at 428.464 kb on + strand, within IAI46_01995at 428.464 kb on + strand, within IAI46_01995at 428.465 kb on - strand, within IAI46_01995at 428.606 kb on + strand, within IAI46_01995at 428.660 kb on + strand, within IAI46_01995at 428.660 kb on + strand, within IAI46_01995at 428.661 kb on - strand, within IAI46_01995at 428.661 kb on - strand, within IAI46_01995at 428.730 kb on - strand, within IAI46_01995at 428.732 kb on + strand, within IAI46_01995at 428.732 kb on + strand, within IAI46_01995at 428.757 kb on + strand, within IAI46_01995at 428.757 kb on + strand, within IAI46_01995at 428.757 kb on + strand, within IAI46_01995at 428.757 kb on + strand, within IAI46_01995at 428.773 kb on + strand, within IAI46_01995at 428.774 kb on - strand, within IAI46_01995at 428.774 kb on - strand, within IAI46_01995at 428.774 kb on - strand, within IAI46_01995at 428.832 kb on + strandat 428.885 kb on - strandat 429.005 kb on + strandat 429.005 kb on + strandat 429.006 kb on - strandat 429.022 kb on - strand, within IAI46_02000at 429.123 kb on - strand, within IAI46_02000at 429.206 kb on + strand, within IAI46_02000at 429.243 kb on - strand, within IAI46_02000at 429.342 kb on + strand, within IAI46_02000at 429.343 kb on - strand, within IAI46_02000at 429.753 kb on - strand, within IAI46_02000at 429.753 kb on - strand, within IAI46_02000at 429.788 kb on + strand, within IAI46_02000at 429.788 kb on + strand, within IAI46_02000at 429.848 kb on + strand, within IAI46_02000

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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426,777 + +0.1
426,824 + -0.7
426,937 - IAI46_01990 0.14 +0.6
427,175 - IAI46_01990 0.39 -0.1
427,209 + IAI46_01990 0.42 -0.5
427,209 + IAI46_01990 0.42 +0.1
427,210 - IAI46_01990 0.42 +0.6
427,323 - IAI46_01990 0.54 +0.5
427,333 + IAI46_01990 0.55 -0.1
427,333 + IAI46_01990 0.55 -0.0
427,333 + IAI46_01990 0.55 +1.5
427,333 + IAI46_01990 0.55 -0.0
427,333 + IAI46_01990 0.55 +0.7
427,334 - IAI46_01990 0.55 +0.5
427,507 + IAI46_01990 0.73 -0.2
427,519 - IAI46_01990 0.74 +0.2
427,533 + IAI46_01990 0.76 -0.5
427,618 + IAI46_01990 0.84 +0.1
427,618 + IAI46_01990 0.84 +1.5
427,618 + IAI46_01990 0.84 +1.5
427,619 - IAI46_01990 0.84 -0.1
427,619 - IAI46_01990 0.84 +1.1
427,619 - IAI46_01990 0.84 -0.1
427,619 - IAI46_01990 0.84 -0.1
427,620 + IAI46_01990 0.84 +0.4
427,620 + IAI46_01990 0.84 +0.3
427,621 - IAI46_01990 0.85 -0.6
427,639 + IAI46_01990 0.86 +0.7
427,639 + IAI46_01990 0.86 +0.3
427,640 - IAI46_01990 0.87 +0.9
427,751 + -1.3
427,751 + +0.3
427,751 + -0.8
427,752 - -1.0
427,752 - +0.3
427,752 - +0.9
427,752 - -0.8
427,752 - -0.2
427,752 - -1.4
427,752 - +1.3
427,752 - -0.7
427,752 - +1.3
427,758 - -0.4
427,758 - -1.1
427,768 + +0.7
427,769 - +0.3
427,769 - +0.3
428,064 + IAI46_01995 0.27 +0.2
428,065 - IAI46_01995 0.27 +0.2
428,076 + IAI46_01995 0.28 -0.0
428,076 + IAI46_01995 0.28 +0.2
428,076 + IAI46_01995 0.28 -0.4
428,077 - IAI46_01995 0.28 +0.2
428,136 + IAI46_01995 0.33 +0.6
428,137 - IAI46_01995 0.33 +0.4
428,137 - IAI46_01995 0.33 -0.9
428,139 + IAI46_01995 0.34 +0.0
428,139 + IAI46_01995 0.34 -0.4
428,139 + IAI46_01995 0.34 +0.6
428,139 + IAI46_01995 0.34 +0.2
428,139 + IAI46_01995 0.34 -0.4
428,139 + IAI46_01995 0.34 +0.2
428,139 + IAI46_01995 0.34 -0.2
428,140 - IAI46_01995 0.34 +0.3
428,140 - IAI46_01995 0.34 +0.3
428,140 - IAI46_01995 0.34 +0.9
428,169 + IAI46_01995 0.36 +2.1
428,170 - IAI46_01995 0.36 +0.1
428,170 - IAI46_01995 0.36 +1.1
428,283 + IAI46_01995 0.46 +0.9
428,293 + IAI46_01995 0.47 +0.4
428,313 + IAI46_01995 0.49 +0.1
428,314 - IAI46_01995 0.49 +0.2
428,314 - IAI46_01995 0.49 +0.7
428,315 + IAI46_01995 0.49 +2.2
428,315 + IAI46_01995 0.49 +0.1
428,315 + IAI46_01995 0.49 -0.3
428,316 - IAI46_01995 0.49 +1.7
428,316 - IAI46_01995 0.49 -0.3
428,319 + IAI46_01995 0.49 +0.8
428,319 + IAI46_01995 0.49 +0.5
428,319 + IAI46_01995 0.49 -0.0
428,319 + IAI46_01995 0.49 +0.9
428,323 - IAI46_01995 0.49 +0.2
428,382 + IAI46_01995 0.55 +0.0
428,382 + IAI46_01995 0.55 +0.3
428,383 - IAI46_01995 0.55 -0.4
428,383 - IAI46_01995 0.55 +0.8
428,399 + IAI46_01995 0.56 +0.0
428,400 - IAI46_01995 0.56 +0.1
428,457 + IAI46_01995 0.61 +0.5
428,457 + IAI46_01995 0.61 +0.4
428,457 + IAI46_01995 0.61 -0.0
428,464 + IAI46_01995 0.62 -0.1
428,464 + IAI46_01995 0.62 -0.1
428,464 + IAI46_01995 0.62 +0.4
428,465 - IAI46_01995 0.62 +0.1
428,606 + IAI46_01995 0.74 +0.9
428,660 + IAI46_01995 0.79 -1.3
428,660 + IAI46_01995 0.79 +0.4
428,661 - IAI46_01995 0.79 -1.5
428,661 - IAI46_01995 0.79 +0.0
428,730 - IAI46_01995 0.85 -0.7
428,732 + IAI46_01995 0.85 -0.1
428,732 + IAI46_01995 0.85 -0.2
428,757 + IAI46_01995 0.87 -0.5
428,757 + IAI46_01995 0.87 +0.2
428,757 + IAI46_01995 0.87 +0.5
428,757 + IAI46_01995 0.87 +0.6
428,773 + IAI46_01995 0.88 -0.0
428,774 - IAI46_01995 0.88 +0.4
428,774 - IAI46_01995 0.88 -1.2
428,774 - IAI46_01995 0.88 -0.0
428,832 + -0.1
428,885 - +0.9
429,005 + +0.7
429,005 + +0.1
429,006 - -0.9
429,022 - IAI46_02000 0.10 +0.7
429,123 - IAI46_02000 0.19 +1.2
429,206 + IAI46_02000 0.27 +0.5
429,243 - IAI46_02000 0.30 -0.1
429,342 + IAI46_02000 0.38 +1.3
429,343 - IAI46_02000 0.38 +0.1
429,753 - IAI46_02000 0.74 -0.1
429,753 - IAI46_02000 0.74 +1.7
429,788 + IAI46_02000 0.77 +0.3
429,788 + IAI46_02000 0.77 +0.1
429,848 + IAI46_02000 0.83 +0.4

Or see this region's nucleotide sequence