Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01800 and IAI46_01805 are separated by 203 nucleotides IAI46_01805 and IAI46_01810 are separated by 124 nucleotides IAI46_01810 and IAI46_01815 are separated by 405 nucleotides IAI46_01815 and IAI46_01820 are separated by 47 nucleotides
IAI46_01800: IAI46_01800 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 391,812 to 393,191
_01800
IAI46_01805: IAI46_01805 - peroxide/acid stress response protein YhcN, at 393,395 to 393,658
_01805
IAI46_01810: IAI46_01810 - peroxide/acid stress response protein YhcN, at 393,783 to 394,046
_01810
IAI46_01815: IAI46_01815 - transcriptional regulator ArgR, at 394,452 to 394,922
_01815
IAI46_01820: IAI46_01820 - hypothetical protein, at 394,970 to 395,137
_01820
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 392.790 kb on + strand, within IAI46_01800 at 392.790 kb on + strand, within IAI46_01800 at 392.791 kb on - strand, within IAI46_01800 at 392.900 kb on + strand, within IAI46_01800 at 392.900 kb on + strand, within IAI46_01800 at 392.984 kb on + strand, within IAI46_01800 at 393.023 kb on - strand, within IAI46_01800 at 393.114 kb on - strand at 393.177 kb on - strand at 393.177 kb on - strand at 393.177 kb on - strand at 393.187 kb on - strand at 393.187 kb on - strand at 393.222 kb on - strand at 393.329 kb on + strand at 393.329 kb on + strand at 393.329 kb on + strand at 393.330 kb on - strand at 393.330 kb on - strand at 393.330 kb on - strand at 393.334 kb on + strand at 393.334 kb on + strand at 393.335 kb on - strand at 393.335 kb on - strand at 393.335 kb on - strand at 393.362 kb on + strand at 393.396 kb on + strand at 393.457 kb on - strand, within IAI46_01805 at 393.464 kb on - strand, within IAI46_01805 at 393.628 kb on + strand, within IAI46_01805 at 393.629 kb on - strand, within IAI46_01805 at 393.629 kb on - strand, within IAI46_01805 at 393.629 kb on - strand, within IAI46_01805 at 393.629 kb on - strand, within IAI46_01805 at 393.629 kb on - strand, within IAI46_01805 at 393.661 kb on + strand at 393.661 kb on + strand at 393.662 kb on - strand at 393.751 kb on + strand at 393.752 kb on - strand at 393.752 kb on - strand at 393.752 kb on - strand at 393.752 kb on - strand at 393.753 kb on + strand at 393.753 kb on + strand at 393.815 kb on + strand, within IAI46_01810 at 393.816 kb on - strand, within IAI46_01810 at 393.837 kb on + strand, within IAI46_01810 at 393.844 kb on + strand, within IAI46_01810 at 393.894 kb on - strand, within IAI46_01810 at 394.031 kb on + strand at 394.032 kb on - strand at 394.032 kb on - strand at 394.037 kb on + strand at 394.113 kb on + strand at 394.113 kb on + strand at 394.113 kb on + strand at 394.113 kb on + strand at 394.114 kb on - strand at 394.114 kb on - strand at 394.114 kb on - strand at 394.183 kb on - strand at 394.183 kb on - strand at 394.260 kb on + strand at 394.260 kb on + strand at 394.260 kb on + strand at 394.261 kb on - strand at 394.261 kb on - strand at 394.261 kb on - strand at 394.295 kb on + strand at 394.295 kb on + strand at 394.295 kb on + strand at 394.295 kb on + strand at 394.295 kb on + strand at 394.295 kb on + strand at 394.299 kb on + strand at 394.300 kb on - strand at 394.305 kb on + strand at 394.305 kb on + strand at 394.305 kb on + strand at 394.305 kb on + strand at 394.305 kb on + strand at 394.306 kb on - strand at 394.386 kb on + strand at 394.386 kb on + strand at 394.387 kb on - strand at 394.399 kb on - strand at 394.441 kb on - strand at 394.446 kb on + strand at 394.446 kb on + strand at 394.506 kb on - strand, within IAI46_01815 at 394.562 kb on + strand, within IAI46_01815 at 394.649 kb on + strand, within IAI46_01815 at 394.650 kb on - strand, within IAI46_01815 at 394.688 kb on + strand, within IAI46_01815 at 394.723 kb on + strand, within IAI46_01815 at 394.724 kb on - strand, within IAI46_01815 at 394.724 kb on - strand, within IAI46_01815 at 394.724 kb on - strand, within IAI46_01815 at 394.724 kb on - strand, within IAI46_01815 at 394.724 kb on - strand, within IAI46_01815 at 394.946 kb on + strand at 394.946 kb on + strand at 394.946 kb on + strand at 394.947 kb on - strand at 394.947 kb on - strand at 394.960 kb on - strand at 394.965 kb on + strand at 395.008 kb on - strand, within IAI46_01820
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 392,790 + IAI46_01800 0.71 +0.9 392,790 + IAI46_01800 0.71 +0.7 392,791 - IAI46_01800 0.71 -0.2 392,900 + IAI46_01800 0.79 +0.4 392,900 + IAI46_01800 0.79 -2.6 392,984 + IAI46_01800 0.85 -0.0 393,023 - IAI46_01800 0.88 -0.7 393,114 - -0.0 393,177 - +0.2 393,177 - -0.0 393,177 - +0.3 393,187 - -0.3 393,187 - +0.5 393,222 - +0.2 393,329 + +0.2 393,329 + -0.3 393,329 + +0.5 393,330 - +0.8 393,330 - +0.2 393,330 - +0.3 393,334 + +1.9 393,334 + +0.8 393,335 - -0.1 393,335 - +0.2 393,335 - +0.5 393,362 + +0.4 393,396 + +1.9 393,457 - IAI46_01805 0.23 -0.3 393,464 - IAI46_01805 0.26 +0.4 393,628 + IAI46_01805 0.88 -0.2 393,629 - IAI46_01805 0.89 +0.4 393,629 - IAI46_01805 0.89 -0.0 393,629 - IAI46_01805 0.89 +0.7 393,629 - IAI46_01805 0.89 +0.5 393,629 - IAI46_01805 0.89 -0.2 393,661 + -0.4 393,661 + -1.8 393,662 - -0.8 393,751 + +0.9 393,752 - -0.7 393,752 - -0.2 393,752 - -0.5 393,752 - +0.6 393,753 + -0.1 393,753 + -1.1 393,815 + IAI46_01810 0.12 +0.7 393,816 - IAI46_01810 0.12 +0.1 393,837 + IAI46_01810 0.20 -0.8 393,844 + IAI46_01810 0.23 -0.4 393,894 - IAI46_01810 0.42 -0.1 394,031 + +0.5 394,032 - -0.3 394,032 - +0.4 394,037 + +0.3 394,113 + -0.8 394,113 + +0.4 394,113 + +0.3 394,113 + +0.7 394,114 - +1.1 394,114 - -0.8 394,114 - -0.4 394,183 - -0.2 394,183 - -0.1 394,260 + -0.0 394,260 + +0.8 394,260 + -0.1 394,261 - +0.3 394,261 - +0.4 394,261 - +0.2 394,295 + -0.2 394,295 + -0.7 394,295 + -1.0 394,295 + +0.2 394,295 + -0.4 394,295 + +0.8 394,299 + -0.1 394,300 - -0.0 394,305 + -0.1 394,305 + -0.4 394,305 + +1.3 394,305 + -0.4 394,305 + +0.9 394,306 - -0.3 394,386 + +0.0 394,386 + -0.1 394,387 - +0.2 394,399 - -0.0 394,441 - -0.6 394,446 + +0.1 394,446 + +0.4 394,506 - IAI46_01815 0.11 +0.1 394,562 + IAI46_01815 0.23 +0.1 394,649 + IAI46_01815 0.42 -1.6 394,650 - IAI46_01815 0.42 -0.1 394,688 + IAI46_01815 0.50 -0.6 394,723 + IAI46_01815 0.58 -1.3 394,724 - IAI46_01815 0.58 +0.2 394,724 - IAI46_01815 0.58 +0.0 394,724 - IAI46_01815 0.58 +0.1 394,724 - IAI46_01815 0.58 +1.8 394,724 - IAI46_01815 0.58 +0.6 394,946 + -0.4 394,946 + +0.8 394,946 + -0.2 394,947 - +1.1 394,947 - +0.1 394,960 - -0.3 394,965 + +0.1 395,008 - IAI46_01820 0.23 -0.6
Or see this region's nucleotide sequence