Strain Fitness in Serratia liquefaciens MT49 around IAI46_01740

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01730 and IAI46_01735 are separated by 43 nucleotidesIAI46_01735 and IAI46_01740 are separated by 119 nucleotidesIAI46_01740 and IAI46_01745 are separated by 256 nucleotidesIAI46_01745 and IAI46_01750 are separated by 1 nucleotides IAI46_01730: IAI46_01730 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 374,182 to 374,802 _01730 IAI46_01735: IAI46_01735 - iron-sulfur cluster repair protein YtfE, at 374,846 to 375,511 _01735 IAI46_01740: IAI46_01740 - bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 375,631 to 377,583 _01740 IAI46_01745: IAI46_01745 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 377,840 to 378,580 _01745 IAI46_01750: IAI46_01750 - YtfJ family protein, at 378,582 to 379,139 _01750 Position (kb) 375 376 377 378Strain fitness (log2 ratio) -2 -1 0 1 2at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.703 kb on + strand, within IAI46_01730at 374.704 kb on - strand, within IAI46_01730at 374.848 kb on - strandat 374.917 kb on + strand, within IAI46_01735at 374.918 kb on - strand, within IAI46_01735at 374.937 kb on + strand, within IAI46_01735at 374.937 kb on + strand, within IAI46_01735at 374.937 kb on + strand, within IAI46_01735at 374.937 kb on + strand, within IAI46_01735at 374.937 kb on + strand, within IAI46_01735at 374.938 kb on - strand, within IAI46_01735at 374.954 kb on - strand, within IAI46_01735at 375.274 kb on + strand, within IAI46_01735at 375.274 kb on + strand, within IAI46_01735at 375.274 kb on + strand, within IAI46_01735at 375.274 kb on + strand, within IAI46_01735at 375.275 kb on - strand, within IAI46_01735at 375.277 kb on - strand, within IAI46_01735at 375.277 kb on - strand, within IAI46_01735at 375.277 kb on - strand, within IAI46_01735at 375.277 kb on - strand, within IAI46_01735at 375.305 kb on - strand, within IAI46_01735at 375.305 kb on - strand, within IAI46_01735at 375.316 kb on - strand, within IAI46_01735at 375.316 kb on - strand, within IAI46_01735at 375.316 kb on - strand, within IAI46_01735at 375.316 kb on - strand, within IAI46_01735at 375.382 kb on + strand, within IAI46_01735at 375.470 kb on - strandat 375.499 kb on + strandat 375.504 kb on + strandat 375.525 kb on + strandat 375.535 kb on - strandat 375.632 kb on + strandat 375.639 kb on + strandat 375.720 kb on + strandat 375.721 kb on - strandat 375.763 kb on - strandat 375.824 kb on - strandat 375.856 kb on - strand, within IAI46_01740at 375.856 kb on - strand, within IAI46_01740at 375.856 kb on - strand, within IAI46_01740at 375.857 kb on + strand, within IAI46_01740at 375.858 kb on - strand, within IAI46_01740at 375.903 kb on + strand, within IAI46_01740at 375.904 kb on - strand, within IAI46_01740at 375.947 kb on + strand, within IAI46_01740at 375.948 kb on - strand, within IAI46_01740at 375.948 kb on - strand, within IAI46_01740at 375.948 kb on - strand, within IAI46_01740at 375.948 kb on - strand, within IAI46_01740at 375.951 kb on + strand, within IAI46_01740at 375.951 kb on + strand, within IAI46_01740at 375.952 kb on - strand, within IAI46_01740at 375.952 kb on - strand, within IAI46_01740at 375.952 kb on - strand, within IAI46_01740at 375.978 kb on + strand, within IAI46_01740at 375.978 kb on + strand, within IAI46_01740at 375.979 kb on - strand, within IAI46_01740at 375.979 kb on - strand, within IAI46_01740at 376.018 kb on - strand, within IAI46_01740at 376.092 kb on + strand, within IAI46_01740at 376.093 kb on - strand, within IAI46_01740at 376.093 kb on - strand, within IAI46_01740at 376.117 kb on - strand, within IAI46_01740at 376.118 kb on + strand, within IAI46_01740at 376.119 kb on - strand, within IAI46_01740at 376.119 kb on - strand, within IAI46_01740at 376.237 kb on + strand, within IAI46_01740at 376.238 kb on - strand, within IAI46_01740at 376.240 kb on + strand, within IAI46_01740at 376.260 kb on - strand, within IAI46_01740at 376.265 kb on + strand, within IAI46_01740at 376.265 kb on + strand, within IAI46_01740at 376.266 kb on - strand, within IAI46_01740at 376.266 kb on - strand, within IAI46_01740at 376.409 kb on + strand, within IAI46_01740at 376.409 kb on + strand, within IAI46_01740at 376.410 kb on - strand, within IAI46_01740at 376.410 kb on - strand, within IAI46_01740at 376.421 kb on + strand, within IAI46_01740at 376.421 kb on + strand, within IAI46_01740at 376.421 kb on + strand, within IAI46_01740at 376.438 kb on - strand, within IAI46_01740at 376.482 kb on - strand, within IAI46_01740at 376.487 kb on + strand, within IAI46_01740at 376.487 kb on + strand, within IAI46_01740at 376.487 kb on + strand, within IAI46_01740at 376.487 kb on + strand, within IAI46_01740at 376.487 kb on + strand, within IAI46_01740at 376.488 kb on - strand, within IAI46_01740at 376.488 kb on - strand, within IAI46_01740at 376.488 kb on - strand, within IAI46_01740at 376.518 kb on + strand, within IAI46_01740at 376.542 kb on + strand, within IAI46_01740at 376.542 kb on + strand, within IAI46_01740at 376.543 kb on - strand, within IAI46_01740at 376.613 kb on + strand, within IAI46_01740at 376.613 kb on + strand, within IAI46_01740at 376.613 kb on + strand, within IAI46_01740at 376.614 kb on - strand, within IAI46_01740at 376.729 kb on + strand, within IAI46_01740at 376.730 kb on - strand, within IAI46_01740at 376.770 kb on + strand, within IAI46_01740at 376.850 kb on + strand, within IAI46_01740at 376.850 kb on + strand, within IAI46_01740at 376.851 kb on - strand, within IAI46_01740at 376.853 kb on + strand, within IAI46_01740at 376.853 kb on + strand, within IAI46_01740at 376.854 kb on - strand, within IAI46_01740at 376.880 kb on + strand, within IAI46_01740at 376.881 kb on - strand, within IAI46_01740at 376.938 kb on + strand, within IAI46_01740at 376.939 kb on - strand, within IAI46_01740at 376.955 kb on + strand, within IAI46_01740at 376.956 kb on - strand, within IAI46_01740at 376.989 kb on + strand, within IAI46_01740at 376.989 kb on + strand, within IAI46_01740at 377.052 kb on - strand, within IAI46_01740at 377.052 kb on - strand, within IAI46_01740at 377.063 kb on - strand, within IAI46_01740at 377.063 kb on - strand, within IAI46_01740at 377.067 kb on + strand, within IAI46_01740at 377.067 kb on + strand, within IAI46_01740at 377.068 kb on - strand, within IAI46_01740at 377.068 kb on - strand, within IAI46_01740at 377.068 kb on - strand, within IAI46_01740at 377.068 kb on - strand, within IAI46_01740at 377.109 kb on + strand, within IAI46_01740at 377.114 kb on + strand, within IAI46_01740at 377.115 kb on - strand, within IAI46_01740at 377.115 kb on - strand, within IAI46_01740at 377.166 kb on + strand, within IAI46_01740at 377.167 kb on - strand, within IAI46_01740at 377.167 kb on - strand, within IAI46_01740at 377.169 kb on - strand, within IAI46_01740at 377.205 kb on - strand, within IAI46_01740at 377.252 kb on + strand, within IAI46_01740at 377.274 kb on + strand, within IAI46_01740at 377.275 kb on - strand, within IAI46_01740at 377.275 kb on - strand, within IAI46_01740at 377.275 kb on - strand, within IAI46_01740at 377.276 kb on + strand, within IAI46_01740at 377.276 kb on + strand, within IAI46_01740at 377.277 kb on - strand, within IAI46_01740at 377.277 kb on - strand, within IAI46_01740at 377.319 kb on + strand, within IAI46_01740at 377.319 kb on + strand, within IAI46_01740at 377.320 kb on - strand, within IAI46_01740at 377.320 kb on - strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.321 kb on + strand, within IAI46_01740at 377.322 kb on - strand, within IAI46_01740at 377.368 kb on + strand, within IAI46_01740at 377.369 kb on - strand, within IAI46_01740at 377.369 kb on - strand, within IAI46_01740at 377.445 kb on + strandat 377.453 kb on + strandat 377.454 kb on - strandat 377.454 kb on - strandat 377.616 kb on + strandat 377.633 kb on + strandat 377.634 kb on - strandat 377.638 kb on - strandat 377.638 kb on - strandat 377.744 kb on + strandat 377.745 kb on - strandat 377.752 kb on + strandat 377.753 kb on - strandat 377.761 kb on + strandat 377.761 kb on + strandat 377.780 kb on + strandat 377.781 kb on - strandat 377.788 kb on + strandat 377.788 kb on + strandat 377.788 kb on + strandat 377.789 kb on - strandat 377.789 kb on - strandat 378.210 kb on - strand, within IAI46_01745at 378.410 kb on - strand, within IAI46_01745at 378.528 kb on - strandat 378.528 kb on - strandat 378.529 kb on + strandat 378.530 kb on - strandat 378.549 kb on + strandat 378.579 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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374,701 + IAI46_01730 0.84 -0.5
374,701 + IAI46_01730 0.84 -0.0
374,701 + IAI46_01730 0.84 +0.4
374,701 + IAI46_01730 0.84 -0.3
374,701 + IAI46_01730 0.84 +1.3
374,701 + IAI46_01730 0.84 +0.7
374,702 - IAI46_01730 0.84 -0.9
374,702 - IAI46_01730 0.84 -0.5
374,702 - IAI46_01730 0.84 -0.8
374,702 - IAI46_01730 0.84 +0.6
374,703 + IAI46_01730 0.84 +1.1
374,704 - IAI46_01730 0.84 +1.9
374,848 - +0.2
374,917 + IAI46_01735 0.11 +0.5
374,918 - IAI46_01735 0.11 -0.6
374,937 + IAI46_01735 0.14 +0.1
374,937 + IAI46_01735 0.14 -0.6
374,937 + IAI46_01735 0.14 -0.5
374,937 + IAI46_01735 0.14 +0.0
374,937 + IAI46_01735 0.14 -0.4
374,938 - IAI46_01735 0.14 +0.1
374,954 - IAI46_01735 0.16 +2.3
375,274 + IAI46_01735 0.64 +0.4
375,274 + IAI46_01735 0.64 +1.4
375,274 + IAI46_01735 0.64 +0.5
375,274 + IAI46_01735 0.64 +0.5
375,275 - IAI46_01735 0.64 +0.8
375,277 - IAI46_01735 0.65 -0.9
375,277 - IAI46_01735 0.65 -1.0
375,277 - IAI46_01735 0.65 +0.3
375,277 - IAI46_01735 0.65 +0.2
375,305 - IAI46_01735 0.69 +1.2
375,305 - IAI46_01735 0.69 +0.1
375,316 - IAI46_01735 0.71 -0.3
375,316 - IAI46_01735 0.71 +0.4
375,316 - IAI46_01735 0.71 +0.1
375,316 - IAI46_01735 0.71 -1.1
375,382 + IAI46_01735 0.80 -1.3
375,470 - +0.2
375,499 + +0.5
375,504 + -0.1
375,525 + -0.0
375,535 - +0.2
375,632 + +0.4
375,639 + +0.3
375,720 + -0.4
375,721 - -0.2
375,763 - -0.1
375,824 - +0.1
375,856 - IAI46_01740 0.12 +0.6
375,856 - IAI46_01740 0.12 +0.2
375,856 - IAI46_01740 0.12 -1.0
375,857 + IAI46_01740 0.12 +0.4
375,858 - IAI46_01740 0.12 +0.5
375,903 + IAI46_01740 0.14 +0.3
375,904 - IAI46_01740 0.14 +0.6
375,947 + IAI46_01740 0.16 -1.3
375,948 - IAI46_01740 0.16 +0.2
375,948 - IAI46_01740 0.16 -0.2
375,948 - IAI46_01740 0.16 +0.2
375,948 - IAI46_01740 0.16 +0.1
375,951 + IAI46_01740 0.16 +1.0
375,951 + IAI46_01740 0.16 +0.9
375,952 - IAI46_01740 0.16 -0.1
375,952 - IAI46_01740 0.16 -0.1
375,952 - IAI46_01740 0.16 +0.3
375,978 + IAI46_01740 0.18 +0.5
375,978 + IAI46_01740 0.18 -0.4
375,979 - IAI46_01740 0.18 +0.9
375,979 - IAI46_01740 0.18 +1.8
376,018 - IAI46_01740 0.20 -0.4
376,092 + IAI46_01740 0.24 +0.0
376,093 - IAI46_01740 0.24 -0.3
376,093 - IAI46_01740 0.24 +0.2
376,117 - IAI46_01740 0.25 -1.2
376,118 + IAI46_01740 0.25 +1.2
376,119 - IAI46_01740 0.25 +1.1
376,119 - IAI46_01740 0.25 +0.0
376,237 + IAI46_01740 0.31 +0.6
376,238 - IAI46_01740 0.31 +0.9
376,240 + IAI46_01740 0.31 +0.6
376,260 - IAI46_01740 0.32 +0.8
376,265 + IAI46_01740 0.32 +0.2
376,265 + IAI46_01740 0.32 +0.0
376,266 - IAI46_01740 0.33 +1.0
376,266 - IAI46_01740 0.33 -1.1
376,409 + IAI46_01740 0.40 +0.0
376,409 + IAI46_01740 0.40 -1.3
376,410 - IAI46_01740 0.40 +0.6
376,410 - IAI46_01740 0.40 +0.1
376,421 + IAI46_01740 0.40 -1.9
376,421 + IAI46_01740 0.40 -0.4
376,421 + IAI46_01740 0.40 -1.1
376,438 - IAI46_01740 0.41 -0.5
376,482 - IAI46_01740 0.44 +0.7
376,487 + IAI46_01740 0.44 -0.6
376,487 + IAI46_01740 0.44 +0.4
376,487 + IAI46_01740 0.44 +0.3
376,487 + IAI46_01740 0.44 -0.3
376,487 + IAI46_01740 0.44 +0.2
376,488 - IAI46_01740 0.44 +0.6
376,488 - IAI46_01740 0.44 +0.2
376,488 - IAI46_01740 0.44 +0.5
376,518 + IAI46_01740 0.45 +0.4
376,542 + IAI46_01740 0.47 +0.3
376,542 + IAI46_01740 0.47 -0.7
376,543 - IAI46_01740 0.47 -0.8
376,613 + IAI46_01740 0.50 +0.4
376,613 + IAI46_01740 0.50 +0.4
376,613 + IAI46_01740 0.50 +0.1
376,614 - IAI46_01740 0.50 +0.2
376,729 + IAI46_01740 0.56 +0.6
376,730 - IAI46_01740 0.56 +0.0
376,770 + IAI46_01740 0.58 +1.0
376,850 + IAI46_01740 0.62 +0.9
376,850 + IAI46_01740 0.62 +0.8
376,851 - IAI46_01740 0.62 +1.1
376,853 + IAI46_01740 0.63 -0.2
376,853 + IAI46_01740 0.63 +0.3
376,854 - IAI46_01740 0.63 +0.2
376,880 + IAI46_01740 0.64 -0.8
376,881 - IAI46_01740 0.64 +0.5
376,938 + IAI46_01740 0.67 +0.8
376,939 - IAI46_01740 0.67 +0.6
376,955 + IAI46_01740 0.68 -0.5
376,956 - IAI46_01740 0.68 -0.5
376,989 + IAI46_01740 0.70 +1.2
376,989 + IAI46_01740 0.70 +1.4
377,052 - IAI46_01740 0.73 -0.4
377,052 - IAI46_01740 0.73 +0.3
377,063 - IAI46_01740 0.73 +0.3
377,063 - IAI46_01740 0.73 +0.4
377,067 + IAI46_01740 0.74 -0.1
377,067 + IAI46_01740 0.74 -0.6
377,068 - IAI46_01740 0.74 +0.6
377,068 - IAI46_01740 0.74 +1.1
377,068 - IAI46_01740 0.74 -0.7
377,068 - IAI46_01740 0.74 -0.3
377,109 + IAI46_01740 0.76 -1.2
377,114 + IAI46_01740 0.76 +1.1
377,115 - IAI46_01740 0.76 +0.0
377,115 - IAI46_01740 0.76 +1.6
377,166 + IAI46_01740 0.79 +1.8
377,167 - IAI46_01740 0.79 -0.4
377,167 - IAI46_01740 0.79 +0.8
377,169 - IAI46_01740 0.79 -0.8
377,205 - IAI46_01740 0.81 +0.3
377,252 + IAI46_01740 0.83 -0.6
377,274 + IAI46_01740 0.84 +0.9
377,275 - IAI46_01740 0.84 -0.5
377,275 - IAI46_01740 0.84 -0.7
377,275 - IAI46_01740 0.84 +0.8
377,276 + IAI46_01740 0.84 -0.8
377,276 + IAI46_01740 0.84 -0.3
377,277 - IAI46_01740 0.84 +0.4
377,277 - IAI46_01740 0.84 +0.3
377,319 + IAI46_01740 0.86 -0.4
377,319 + IAI46_01740 0.86 -0.2
377,320 - IAI46_01740 0.86 +0.8
377,320 - IAI46_01740 0.86 +1.1
377,321 + IAI46_01740 0.87 +0.0
377,321 + IAI46_01740 0.87 -1.0
377,321 + IAI46_01740 0.87 +0.7
377,321 + IAI46_01740 0.87 +0.2
377,321 + IAI46_01740 0.87 -0.1
377,321 + IAI46_01740 0.87 -0.5
377,321 + IAI46_01740 0.87 -0.3
377,322 - IAI46_01740 0.87 -0.5
377,368 + IAI46_01740 0.89 +1.5
377,369 - IAI46_01740 0.89 -0.4
377,369 - IAI46_01740 0.89 +0.7
377,445 + -0.3
377,453 + +0.4
377,454 - -0.2
377,454 - +0.2
377,616 + +0.7
377,633 + -0.4
377,634 - +0.8
377,638 - -0.3
377,638 - +0.9
377,744 + +0.6
377,745 - -0.7
377,752 + +0.2
377,753 - +0.2
377,761 + +0.3
377,761 + -0.4
377,780 + +0.1
377,781 - +0.5
377,788 + +0.2
377,788 + +0.6
377,788 + -0.3
377,789 - -1.5
377,789 - -0.8
378,210 - IAI46_01745 0.50 -0.3
378,410 - IAI46_01745 0.77 -0.6
378,528 - -1.3
378,528 - -1.0
378,529 + -0.7
378,530 - -0.4
378,549 + -0.7
378,579 - -0.1

Or see this region's nucleotide sequence