Strain Fitness in Serratia liquefaciens MT49 around IAI46_01725

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01710 and IAI46_01715 are separated by 39 nucleotidesIAI46_01715 and IAI46_01720 are separated by 110 nucleotidesIAI46_01720 and IAI46_01725 overlap by 4 nucleotidesIAI46_01725 and IAI46_01730 are separated by 288 nucleotidesIAI46_01730 and IAI46_01735 are separated by 43 nucleotides IAI46_01710: IAI46_01710 - 30S ribosomal protein S18, at 372,039 to 372,266 _01710 IAI46_01715: IAI46_01715 - 50S ribosomal protein L9, at 372,306 to 372,758 _01715 IAI46_01720: IAI46_01720 - DUF488 family protein, at 372,869 to 373,228 _01720 IAI46_01725: IAI46_01725 - Opacity-associated protein A domain protein, at 373,225 to 373,893 _01725 IAI46_01730: IAI46_01730 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 374,182 to 374,802 _01730 IAI46_01735: IAI46_01735 - iron-sulfur cluster repair protein YtfE, at 374,846 to 375,511 _01735 Position (kb) 373 374Strain fitness (log2 ratio) -2 -1 0 1 2at 372.314 kb on + strandat 372.823 kb on - strandat 372.823 kb on - strandat 372.840 kb on + strandat 372.841 kb on - strandat 372.880 kb on + strandat 372.880 kb on + strandat 372.881 kb on - strandat 372.930 kb on - strand, within IAI46_01720at 373.074 kb on - strand, within IAI46_01720at 373.122 kb on + strand, within IAI46_01720at 373.123 kb on - strand, within IAI46_01720at 373.123 kb on - strand, within IAI46_01720at 373.125 kb on + strand, within IAI46_01720at 373.126 kb on - strand, within IAI46_01720at 373.126 kb on - strand, within IAI46_01720at 373.149 kb on + strand, within IAI46_01720at 373.150 kb on - strand, within IAI46_01720at 373.150 kb on - strand, within IAI46_01720at 373.150 kb on - strand, within IAI46_01720at 373.150 kb on - strand, within IAI46_01720at 373.155 kb on - strand, within IAI46_01720at 373.209 kb on + strandat 373.209 kb on + strandat 373.268 kb on - strandat 373.268 kb on - strandat 373.300 kb on + strand, within IAI46_01725at 373.301 kb on - strand, within IAI46_01725at 373.323 kb on + strand, within IAI46_01725at 373.323 kb on + strand, within IAI46_01725at 373.374 kb on + strand, within IAI46_01725at 373.473 kb on - strand, within IAI46_01725at 373.504 kb on + strand, within IAI46_01725at 373.601 kb on + strand, within IAI46_01725at 373.665 kb on - strand, within IAI46_01725at 373.720 kb on + strand, within IAI46_01725at 373.720 kb on + strand, within IAI46_01725at 373.780 kb on + strand, within IAI46_01725at 373.781 kb on - strand, within IAI46_01725at 373.781 kb on - strand, within IAI46_01725at 373.834 kb on - strandat 373.834 kb on - strandat 373.850 kb on + strandat 373.850 kb on + strandat 373.850 kb on + strandat 373.896 kb on + strandat 373.941 kb on + strandat 373.942 kb on - strandat 373.971 kb on + strandat 373.971 kb on + strandat 374.059 kb on + strandat 374.070 kb on + strandat 374.141 kb on - strandat 374.141 kb on - strandat 374.141 kb on - strandat 374.162 kb on - strandat 374.168 kb on + strandat 374.237 kb on + strandat 374.237 kb on + strandat 374.473 kb on - strand, within IAI46_01730at 374.473 kb on - strand, within IAI46_01730at 374.560 kb on + strand, within IAI46_01730at 374.560 kb on + strand, within IAI46_01730at 374.561 kb on - strand, within IAI46_01730at 374.561 kb on - strand, within IAI46_01730at 374.561 kb on - strand, within IAI46_01730at 374.603 kb on + strand, within IAI46_01730at 374.603 kb on + strand, within IAI46_01730at 374.603 kb on + strand, within IAI46_01730at 374.604 kb on - strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.703 kb on + strand, within IAI46_01730at 374.704 kb on - strand, within IAI46_01730at 374.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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372,314 + -0.8
372,823 - -0.1
372,823 - +1.1
372,840 + +1.1
372,841 - +0.3
372,880 + +0.3
372,880 + +0.1
372,881 - -0.6
372,930 - IAI46_01720 0.17 +2.0
373,074 - IAI46_01720 0.57 +0.8
373,122 + IAI46_01720 0.70 +0.6
373,123 - IAI46_01720 0.71 +0.0
373,123 - IAI46_01720 0.71 +0.9
373,125 + IAI46_01720 0.71 +0.4
373,126 - IAI46_01720 0.71 -0.3
373,126 - IAI46_01720 0.71 -0.2
373,149 + IAI46_01720 0.78 -1.0
373,150 - IAI46_01720 0.78 -0.4
373,150 - IAI46_01720 0.78 +0.4
373,150 - IAI46_01720 0.78 +0.4
373,150 - IAI46_01720 0.78 -1.8
373,155 - IAI46_01720 0.79 +0.4
373,209 + -1.6
373,209 + -0.0
373,268 - +0.0
373,268 - +0.0
373,300 + IAI46_01725 0.11 +1.2
373,301 - IAI46_01725 0.11 +0.0
373,323 + IAI46_01725 0.15 -0.6
373,323 + IAI46_01725 0.15 +0.5
373,374 + IAI46_01725 0.22 -0.7
373,473 - IAI46_01725 0.37 +0.2
373,504 + IAI46_01725 0.42 -0.1
373,601 + IAI46_01725 0.56 +1.0
373,665 - IAI46_01725 0.66 -0.3
373,720 + IAI46_01725 0.74 -0.3
373,720 + IAI46_01725 0.74 +0.3
373,780 + IAI46_01725 0.83 -0.1
373,781 - IAI46_01725 0.83 +0.5
373,781 - IAI46_01725 0.83 +0.3
373,834 - +0.3
373,834 - +0.2
373,850 + -0.9
373,850 + -0.3
373,850 + -2.0
373,896 + +0.8
373,941 + -0.4
373,942 - +1.0
373,971 + +1.0
373,971 + -0.1
374,059 + +0.6
374,070 + -0.0
374,141 - +0.4
374,141 - +0.1
374,141 - +1.7
374,162 - -0.4
374,168 + +0.9
374,237 + +0.9
374,237 + +0.3
374,473 - IAI46_01730 0.47 +1.1
374,473 - IAI46_01730 0.47 +0.1
374,560 + IAI46_01730 0.61 +0.4
374,560 + IAI46_01730 0.61 -0.5
374,561 - IAI46_01730 0.61 +0.6
374,561 - IAI46_01730 0.61 +0.8
374,561 - IAI46_01730 0.61 +0.0
374,603 + IAI46_01730 0.68 +0.5
374,603 + IAI46_01730 0.68 -0.9
374,603 + IAI46_01730 0.68 +0.4
374,604 - IAI46_01730 0.68 +0.7
374,701 + IAI46_01730 0.84 -0.5
374,701 + IAI46_01730 0.84 -0.0
374,701 + IAI46_01730 0.84 +0.4
374,701 + IAI46_01730 0.84 -0.3
374,701 + IAI46_01730 0.84 +1.3
374,701 + IAI46_01730 0.84 +0.7
374,702 - IAI46_01730 0.84 -0.9
374,702 - IAI46_01730 0.84 -0.5
374,702 - IAI46_01730 0.84 -0.8
374,702 - IAI46_01730 0.84 +0.6
374,703 + IAI46_01730 0.84 +1.1
374,704 - IAI46_01730 0.84 +1.9
374,848 - +0.2

Or see this region's nucleotide sequence