Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01285 and IAI46_01290 are separated by 322 nucleotides IAI46_01290 and IAI46_01295 are separated by 360 nucleotides
IAI46_01285: IAI46_01285 - response regulator, at 284,417 to 285,232
_01285
IAI46_01290: IAI46_01290 - thioesterase family protein, at 285,555 to 285,971
_01290
IAI46_01295: IAI46_01295 - 2-iminoacetate synthase ThiH, at 286,332 to 287,465
_01295
Position (kb) 285
286 Strain fitness (log2 ratio) -1
0
1
2 at 284.572 kb on + strand, within IAI46_01285 at 284.598 kb on - strand, within IAI46_01285 at 284.645 kb on - strand, within IAI46_01285 at 284.645 kb on - strand, within IAI46_01285 at 284.655 kb on + strand, within IAI46_01285 at 284.655 kb on + strand, within IAI46_01285 at 284.656 kb on - strand, within IAI46_01285 at 284.659 kb on + strand, within IAI46_01285 at 284.660 kb on - strand, within IAI46_01285 at 284.660 kb on - strand, within IAI46_01285 at 284.660 kb on - strand, within IAI46_01285 at 284.660 kb on - strand, within IAI46_01285 at 284.660 kb on - strand, within IAI46_01285 at 284.660 kb on - strand, within IAI46_01285 at 284.690 kb on - strand, within IAI46_01285 at 284.804 kb on + strand, within IAI46_01285 at 284.818 kb on + strand, within IAI46_01285 at 284.818 kb on + strand, within IAI46_01285 at 284.819 kb on - strand, within IAI46_01285 at 284.820 kb on + strand, within IAI46_01285 at 284.820 kb on + strand, within IAI46_01285 at 284.820 kb on + strand, within IAI46_01285 at 284.820 kb on + strand, within IAI46_01285 at 284.820 kb on + strand, within IAI46_01285 at 284.821 kb on - strand, within IAI46_01285 at 284.857 kb on + strand, within IAI46_01285 at 284.858 kb on - strand, within IAI46_01285 at 284.858 kb on - strand, within IAI46_01285 at 284.860 kb on + strand, within IAI46_01285 at 284.889 kb on + strand, within IAI46_01285 at 284.889 kb on + strand, within IAI46_01285 at 284.889 kb on + strand, within IAI46_01285 at 284.916 kb on - strand, within IAI46_01285 at 284.950 kb on + strand, within IAI46_01285 at 284.950 kb on + strand, within IAI46_01285 at 284.951 kb on - strand, within IAI46_01285 at 284.951 kb on - strand, within IAI46_01285 at 284.954 kb on + strand, within IAI46_01285 at 284.954 kb on + strand, within IAI46_01285 at 284.955 kb on - strand, within IAI46_01285 at 284.955 kb on - strand, within IAI46_01285 at 284.955 kb on - strand, within IAI46_01285 at 284.955 kb on - strand, within IAI46_01285 at 284.955 kb on - strand, within IAI46_01285 at 284.955 kb on - strand, within IAI46_01285 at 285.016 kb on - strand, within IAI46_01285 at 285.016 kb on - strand, within IAI46_01285 at 285.016 kb on - strand, within IAI46_01285 at 285.016 kb on - strand, within IAI46_01285 at 285.024 kb on - strand, within IAI46_01285 at 285.059 kb on - strand, within IAI46_01285 at 285.059 kb on - strand, within IAI46_01285 at 285.085 kb on + strand, within IAI46_01285 at 285.086 kb on - strand, within IAI46_01285 at 285.086 kb on - strand, within IAI46_01285 at 285.087 kb on + strand, within IAI46_01285 at 285.088 kb on - strand, within IAI46_01285 at 285.088 kb on - strand, within IAI46_01285 at 285.088 kb on - strand, within IAI46_01285 at 285.264 kb on + strand at 285.265 kb on - strand at 285.266 kb on + strand at 285.266 kb on + strand at 285.266 kb on + strand at 285.267 kb on - strand at 285.267 kb on - strand at 285.372 kb on - strand at 285.372 kb on - strand at 285.380 kb on + strand at 285.381 kb on - strand at 285.386 kb on + strand at 285.387 kb on - strand at 285.387 kb on - strand at 285.387 kb on - strand at 285.387 kb on - strand at 285.390 kb on + strand at 285.390 kb on + strand at 285.391 kb on - strand at 285.391 kb on - strand at 285.391 kb on - strand at 285.397 kb on + strand at 285.397 kb on + strand at 285.397 kb on + strand at 285.397 kb on + strand at 285.397 kb on + strand at 285.397 kb on + strand at 285.397 kb on + strand at 285.397 kb on + strand at 285.398 kb on - strand at 285.398 kb on - strand at 285.398 kb on - strand at 285.398 kb on - strand at 285.398 kb on - strand at 285.399 kb on + strand at 285.399 kb on + strand at 285.399 kb on + strand at 285.400 kb on - strand at 285.400 kb on - strand at 285.400 kb on - strand at 285.400 kb on - strand at 285.444 kb on - strand at 285.444 kb on - strand at 285.470 kb on - strand at 285.514 kb on + strand at 285.577 kb on + strand at 285.597 kb on + strand, within IAI46_01290 at 285.598 kb on - strand, within IAI46_01290 at 285.616 kb on - strand, within IAI46_01290 at 285.616 kb on - strand, within IAI46_01290 at 285.616 kb on - strand, within IAI46_01290 at 285.616 kb on - strand, within IAI46_01290 at 285.633 kb on + strand, within IAI46_01290 at 285.634 kb on - strand, within IAI46_01290 at 285.686 kb on + strand, within IAI46_01290 at 285.686 kb on + strand, within IAI46_01290 at 285.686 kb on + strand, within IAI46_01290 at 285.698 kb on - strand, within IAI46_01290 at 285.722 kb on + strand, within IAI46_01290 at 285.722 kb on + strand, within IAI46_01290 at 285.722 kb on + strand, within IAI46_01290 at 285.731 kb on + strand, within IAI46_01290 at 285.731 kb on + strand, within IAI46_01290 at 285.731 kb on + strand, within IAI46_01290 at 285.732 kb on - strand, within IAI46_01290 at 285.780 kb on - strand, within IAI46_01290 at 285.832 kb on - strand, within IAI46_01290 at 285.851 kb on + strand, within IAI46_01290 at 285.851 kb on + strand, within IAI46_01290 at 285.851 kb on + strand, within IAI46_01290 at 285.851 kb on + strand, within IAI46_01290 at 285.851 kb on + strand, within IAI46_01290 at 285.852 kb on - strand, within IAI46_01290 at 285.852 kb on - strand, within IAI46_01290 at 285.894 kb on - strand, within IAI46_01290 at 285.894 kb on - strand, within IAI46_01290 at 285.924 kb on + strand, within IAI46_01290 at 285.925 kb on - strand, within IAI46_01290 at 285.996 kb on - strand at 286.018 kb on + strand at 286.018 kb on + strand at 286.019 kb on - strand at 286.032 kb on + strand at 286.032 kb on + strand at 286.032 kb on + strand at 286.033 kb on - strand at 286.033 kb on - strand at 286.035 kb on + strand at 286.036 kb on - strand at 286.057 kb on + strand at 286.197 kb on + strand at 286.198 kb on - strand at 286.198 kb on - strand at 286.241 kb on + strand at 286.241 kb on + strand at 286.241 kb on + strand at 286.242 kb on - strand at 286.242 kb on - strand at 286.242 kb on - strand at 286.242 kb on - strand at 286.243 kb on + strand at 286.244 kb on - strand at 286.244 kb on - strand at 286.277 kb on + strand at 286.293 kb on + strand at 286.293 kb on + strand at 286.294 kb on - strand at 286.294 kb on - strand at 286.318 kb on + strand at 286.333 kb on + strand at 286.334 kb on - strand at 286.334 kb on - strand at 286.355 kb on - strand at 286.355 kb on - strand at 286.477 kb on + strand, within IAI46_01295 at 286.477 kb on + strand, within IAI46_01295 at 286.478 kb on - strand, within IAI46_01295 at 286.478 kb on - strand, within IAI46_01295 at 286.535 kb on + strand, within IAI46_01295 at 286.536 kb on - strand, within IAI46_01295 at 286.536 kb on - strand, within IAI46_01295 at 286.656 kb on + strand, within IAI46_01295 at 286.657 kb on - strand, within IAI46_01295 at 286.657 kb on - strand, within IAI46_01295 at 286.657 kb on - strand, within IAI46_01295 at 286.657 kb on - strand, within IAI46_01295 at 286.714 kb on + strand, within IAI46_01295 at 286.729 kb on + strand, within IAI46_01295 at 286.734 kb on + strand, within IAI46_01295 at 286.734 kb on + strand, within IAI46_01295 at 286.735 kb on - strand, within IAI46_01295 at 286.735 kb on - strand, within IAI46_01295 at 286.735 kb on - strand, within IAI46_01295 at 286.735 kb on - strand, within IAI46_01295 at 286.735 kb on - strand, within IAI46_01295 at 286.735 kb on - strand, within IAI46_01295 at 286.751 kb on + strand, within IAI46_01295 at 286.751 kb on + strand, within IAI46_01295 at 286.751 kb on + strand, within IAI46_01295 at 286.751 kb on + strand, within IAI46_01295 at 286.752 kb on - strand, within IAI46_01295 at 286.752 kb on - strand, within IAI46_01295 at 286.752 kb on - strand, within IAI46_01295 at 286.752 kb on - strand, within IAI46_01295 at 286.752 kb on - strand, within IAI46_01295 at 286.753 kb on + strand, within IAI46_01295 at 286.753 kb on + strand, within IAI46_01295 at 286.753 kb on + strand, within IAI46_01295 at 286.754 kb on - strand, within IAI46_01295 at 286.754 kb on - strand, within IAI46_01295 at 286.754 kb on - strand, within IAI46_01295 at 286.754 kb on - strand, within IAI46_01295 at 286.754 kb on - strand, within IAI46_01295 at 286.754 kb on - strand, within IAI46_01295 at 286.754 kb on - strand, within IAI46_01295 at 286.754 kb on - strand, within IAI46_01295 at 286.754 kb on - strand, within IAI46_01295 at 286.894 kb on + strand, within IAI46_01295 at 286.894 kb on + strand, within IAI46_01295 at 286.895 kb on - strand, within IAI46_01295 at 286.895 kb on - strand, within IAI46_01295 at 286.910 kb on - strand, within IAI46_01295 at 286.963 kb on + strand, within IAI46_01295 at 286.963 kb on + strand, within IAI46_01295 at 286.964 kb on - strand, within IAI46_01295 at 286.964 kb on - strand, within IAI46_01295
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 284,572 + IAI46_01285 0.19 +0.6 284,598 - IAI46_01285 0.22 -0.3 284,645 - IAI46_01285 0.28 +0.8 284,645 - IAI46_01285 0.28 -0.5 284,655 + IAI46_01285 0.29 +0.8 284,655 + IAI46_01285 0.29 +1.2 284,656 - IAI46_01285 0.29 +0.1 284,659 + IAI46_01285 0.30 -0.3 284,660 - IAI46_01285 0.30 -0.2 284,660 - IAI46_01285 0.30 -0.1 284,660 - IAI46_01285 0.30 -0.0 284,660 - IAI46_01285 0.30 +1.0 284,660 - IAI46_01285 0.30 +0.6 284,660 - IAI46_01285 0.30 +0.3 284,690 - IAI46_01285 0.33 +1.0 284,804 + IAI46_01285 0.47 +0.3 284,818 + IAI46_01285 0.49 +0.6 284,818 + IAI46_01285 0.49 +0.6 284,819 - IAI46_01285 0.49 +0.4 284,820 + IAI46_01285 0.49 -0.6 284,820 + IAI46_01285 0.49 +1.8 284,820 + IAI46_01285 0.49 +0.6 284,820 + IAI46_01285 0.49 +0.9 284,820 + IAI46_01285 0.49 +0.5 284,821 - IAI46_01285 0.50 +0.6 284,857 + IAI46_01285 0.54 +0.6 284,858 - IAI46_01285 0.54 +0.6 284,858 - IAI46_01285 0.54 -0.0 284,860 + IAI46_01285 0.54 -0.7 284,889 + IAI46_01285 0.58 +0.0 284,889 + IAI46_01285 0.58 +0.8 284,889 + IAI46_01285 0.58 +1.0 284,916 - IAI46_01285 0.61 +0.7 284,950 + IAI46_01285 0.65 +1.9 284,950 + IAI46_01285 0.65 +0.8 284,951 - IAI46_01285 0.65 +0.5 284,951 - IAI46_01285 0.65 +0.7 284,954 + IAI46_01285 0.66 +0.3 284,954 + IAI46_01285 0.66 +0.4 284,955 - IAI46_01285 0.66 +0.7 284,955 - IAI46_01285 0.66 +0.3 284,955 - IAI46_01285 0.66 +0.6 284,955 - IAI46_01285 0.66 +0.7 284,955 - IAI46_01285 0.66 +0.7 284,955 - IAI46_01285 0.66 -0.4 285,016 - IAI46_01285 0.73 +2.5 285,016 - IAI46_01285 0.73 -1.0 285,016 - IAI46_01285 0.73 +0.5 285,016 - IAI46_01285 0.73 +1.5 285,024 - IAI46_01285 0.74 +0.7 285,059 - IAI46_01285 0.79 -0.4 285,059 - IAI46_01285 0.79 +0.6 285,085 + IAI46_01285 0.82 +0.4 285,086 - IAI46_01285 0.82 -0.8 285,086 - IAI46_01285 0.82 +0.3 285,087 + IAI46_01285 0.82 -0.4 285,088 - IAI46_01285 0.82 +0.8 285,088 - IAI46_01285 0.82 +1.0 285,088 - IAI46_01285 0.82 +0.6 285,264 + +0.9 285,265 - -0.2 285,266 + +0.4 285,266 + -0.2 285,266 + +0.1 285,267 - +0.6 285,267 - +0.7 285,372 - -0.0 285,372 - -0.5 285,380 + -0.0 285,381 - -0.6 285,386 + +1.4 285,387 - -0.9 285,387 - -0.1 285,387 - +0.1 285,387 - -0.4 285,390 + -0.1 285,390 + -0.0 285,391 - +0.5 285,391 - -0.3 285,391 - +0.1 285,397 + -0.1 285,397 + +0.5 285,397 + -0.3 285,397 + +0.4 285,397 + +0.5 285,397 + -0.5 285,397 + +0.2 285,397 + -0.7 285,398 - +0.3 285,398 - +0.6 285,398 - -0.1 285,398 - +0.1 285,398 - -0.3 285,399 + +1.4 285,399 + -0.1 285,399 + -0.7 285,400 - +1.0 285,400 - +0.2 285,400 - +0.3 285,400 - +0.7 285,444 - -0.2 285,444 - +0.1 285,470 - -0.2 285,514 + +0.3 285,577 + +0.8 285,597 + IAI46_01290 0.10 -0.5 285,598 - IAI46_01290 0.10 -0.4 285,616 - IAI46_01290 0.15 -0.5 285,616 - IAI46_01290 0.15 -0.1 285,616 - IAI46_01290 0.15 +0.6 285,616 - IAI46_01290 0.15 +0.4 285,633 + IAI46_01290 0.19 +0.7 285,634 - IAI46_01290 0.19 -0.7 285,686 + IAI46_01290 0.31 -0.0 285,686 + IAI46_01290 0.31 -0.0 285,686 + IAI46_01290 0.31 +0.3 285,698 - IAI46_01290 0.34 -1.1 285,722 + IAI46_01290 0.40 -0.6 285,722 + IAI46_01290 0.40 +0.4 285,722 + IAI46_01290 0.40 +0.5 285,731 + IAI46_01290 0.42 -1.3 285,731 + IAI46_01290 0.42 -0.0 285,731 + IAI46_01290 0.42 -0.1 285,732 - IAI46_01290 0.42 +0.5 285,780 - IAI46_01290 0.54 +0.9 285,832 - IAI46_01290 0.66 +0.2 285,851 + IAI46_01290 0.71 +0.1 285,851 + IAI46_01290 0.71 -0.0 285,851 + IAI46_01290 0.71 +0.3 285,851 + IAI46_01290 0.71 +0.3 285,851 + IAI46_01290 0.71 +0.7 285,852 - IAI46_01290 0.71 +1.6 285,852 - IAI46_01290 0.71 +1.6 285,894 - IAI46_01290 0.81 +0.1 285,894 - IAI46_01290 0.81 +0.1 285,924 + IAI46_01290 0.88 -0.2 285,925 - IAI46_01290 0.89 +0.1 285,996 - +0.1 286,018 + +0.1 286,018 + +1.0 286,019 - +0.8 286,032 + -0.2 286,032 + +1.7 286,032 + +0.2 286,033 - +0.8 286,033 - +0.4 286,035 + +0.1 286,036 - -0.5 286,057 + -0.2 286,197 + -0.3 286,198 - +0.2 286,198 - -0.2 286,241 + +0.2 286,241 + -0.1 286,241 + +0.2 286,242 - -0.3 286,242 - -0.6 286,242 - -1.3 286,242 - -0.1 286,243 + +0.5 286,244 - -0.4 286,244 - +0.5 286,277 + -1.1 286,293 + -1.2 286,293 + -0.7 286,294 - -0.3 286,294 - +0.1 286,318 + +1.0 286,333 + +2.2 286,334 - +0.3 286,334 - +1.1 286,355 - +0.0 286,355 - +0.0 286,477 + IAI46_01295 0.13 -0.1 286,477 + IAI46_01295 0.13 -0.4 286,478 - IAI46_01295 0.13 -0.8 286,478 - IAI46_01295 0.13 -0.8 286,535 + IAI46_01295 0.18 +0.5 286,536 - IAI46_01295 0.18 -0.7 286,536 - IAI46_01295 0.18 +0.8 286,656 + IAI46_01295 0.29 -1.4 286,657 - IAI46_01295 0.29 +1.8 286,657 - IAI46_01295 0.29 -1.0 286,657 - IAI46_01295 0.29 +1.0 286,657 - IAI46_01295 0.29 +0.0 286,714 + IAI46_01295 0.34 +1.0 286,729 + IAI46_01295 0.35 +0.5 286,734 + IAI46_01295 0.35 +0.6 286,734 + IAI46_01295 0.35 -1.4 286,735 - IAI46_01295 0.36 +1.2 286,735 - IAI46_01295 0.36 +0.4 286,735 - IAI46_01295 0.36 +0.2 286,735 - IAI46_01295 0.36 +0.3 286,735 - IAI46_01295 0.36 -0.2 286,735 - IAI46_01295 0.36 +0.2 286,751 + IAI46_01295 0.37 +0.2 286,751 + IAI46_01295 0.37 +0.4 286,751 + IAI46_01295 0.37 +1.5 286,751 + IAI46_01295 0.37 +0.4 286,752 - IAI46_01295 0.37 +0.2 286,752 - IAI46_01295 0.37 +0.3 286,752 - IAI46_01295 0.37 +0.6 286,752 - IAI46_01295 0.37 +1.7 286,752 - IAI46_01295 0.37 -0.2 286,753 + IAI46_01295 0.37 +0.5 286,753 + IAI46_01295 0.37 +2.2 286,753 + IAI46_01295 0.37 +0.0 286,754 - IAI46_01295 0.37 -0.5 286,754 - IAI46_01295 0.37 +0.3 286,754 - IAI46_01295 0.37 -0.2 286,754 - IAI46_01295 0.37 +0.3 286,754 - IAI46_01295 0.37 +0.0 286,754 - IAI46_01295 0.37 -0.0 286,754 - IAI46_01295 0.37 +0.3 286,754 - IAI46_01295 0.37 +0.2 286,754 - IAI46_01295 0.37 +0.7 286,894 + IAI46_01295 0.50 +0.0 286,894 + IAI46_01295 0.50 +0.2 286,895 - IAI46_01295 0.50 +0.9 286,895 - IAI46_01295 0.50 -0.3 286,910 - IAI46_01295 0.51 +0.2 286,963 + IAI46_01295 0.56 +0.8 286,963 + IAI46_01295 0.56 +0.1 286,964 - IAI46_01295 0.56 +0.1 286,964 - IAI46_01295 0.56 +0.0
Or see this region's nucleotide sequence