Strain Fitness in Serratia liquefaciens MT49 around IAI46_00955

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00950 and IAI46_00955 overlap by 4 nucleotidesIAI46_00955 and IAI46_00960 are separated by 406 nucleotides IAI46_00950: IAI46_00950 - DUF3142 domain-containing protein, at 212,980 to 214,197 _00950 IAI46_00955: IAI46_00955 - aspartate 1-decarboxylase autocleavage activator PanM, at 214,194 to 214,586 _00955 IAI46_00960: IAI46_00960 - branched-chain amino acid ABC transporter substrate-binding protein, at 214,993 to 216,108 _00960 Position (kb) 214 215Strain fitness (log2 ratio) -2 -1 0 1at 213.209 kb on - strand, within IAI46_00950at 213.286 kb on + strand, within IAI46_00950at 213.563 kb on + strand, within IAI46_00950at 213.563 kb on + strand, within IAI46_00950at 213.563 kb on + strand, within IAI46_00950at 213.564 kb on - strand, within IAI46_00950at 213.572 kb on - strand, within IAI46_00950at 213.622 kb on + strand, within IAI46_00950at 213.623 kb on - strand, within IAI46_00950at 213.709 kb on - strand, within IAI46_00950at 213.768 kb on - strand, within IAI46_00950at 213.787 kb on - strand, within IAI46_00950at 213.856 kb on + strand, within IAI46_00950at 214.021 kb on - strand, within IAI46_00950at 214.088 kb on + strandat 214.088 kb on + strandat 214.089 kb on - strandat 214.089 kb on - strandat 214.089 kb on - strandat 214.089 kb on - strandat 214.154 kb on - strandat 214.248 kb on - strand, within IAI46_00955at 214.306 kb on - strand, within IAI46_00955at 214.343 kb on - strand, within IAI46_00955at 214.343 kb on - strand, within IAI46_00955at 214.472 kb on + strand, within IAI46_00955at 214.473 kb on - strand, within IAI46_00955at 214.574 kb on + strandat 214.575 kb on - strandat 214.606 kb on - strandat 214.623 kb on + strandat 214.623 kb on + strandat 214.624 kb on - strandat 214.624 kb on - strandat 214.626 kb on + strandat 214.626 kb on + strandat 214.626 kb on + strandat 214.627 kb on - strandat 214.627 kb on - strandat 214.627 kb on - strandat 214.627 kb on - strandat 214.661 kb on + strandat 214.706 kb on + strandat 214.706 kb on + strandat 214.710 kb on + strandat 214.710 kb on + strandat 214.710 kb on + strandat 214.714 kb on + strandat 214.715 kb on - strandat 214.715 kb on - strandat 214.715 kb on - strandat 214.719 kb on - strandat 214.738 kb on + strandat 214.739 kb on - strandat 214.929 kb on - strandat 214.932 kb on + strandat 214.932 kb on + strandat 214.962 kb on + strandat 214.963 kb on - strandat 215.011 kb on - strandat 215.031 kb on + strandat 215.031 kb on + strandat 215.116 kb on + strand, within IAI46_00960at 215.209 kb on + strand, within IAI46_00960at 215.209 kb on + strand, within IAI46_00960at 215.210 kb on - strand, within IAI46_00960at 215.258 kb on + strand, within IAI46_00960at 215.258 kb on + strand, within IAI46_00960at 215.258 kb on + strand, within IAI46_00960at 215.258 kb on + strand, within IAI46_00960at 215.258 kb on + strand, within IAI46_00960at 215.259 kb on - strand, within IAI46_00960at 215.279 kb on - strand, within IAI46_00960at 215.329 kb on + strand, within IAI46_00960at 215.329 kb on + strand, within IAI46_00960at 215.329 kb on + strand, within IAI46_00960at 215.329 kb on + strand, within IAI46_00960at 215.330 kb on - strand, within IAI46_00960at 215.330 kb on - strand, within IAI46_00960at 215.330 kb on - strand, within IAI46_00960at 215.330 kb on - strand, within IAI46_00960at 215.330 kb on - strand, within IAI46_00960at 215.330 kb on - strand, within IAI46_00960at 215.330 kb on - strand, within IAI46_00960at 215.330 kb on - strand, within IAI46_00960at 215.330 kb on - strand, within IAI46_00960at 215.370 kb on + strand, within IAI46_00960at 215.412 kb on + strand, within IAI46_00960at 215.412 kb on + strand, within IAI46_00960at 215.412 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.456 kb on - strand, within IAI46_00960at 215.513 kb on - strand, within IAI46_00960at 215.586 kb on + strand, within IAI46_00960

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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213,209 - IAI46_00950 0.19 +0.7
213,286 + IAI46_00950 0.25 +0.3
213,563 + IAI46_00950 0.48 -2.1
213,563 + IAI46_00950 0.48 +0.1
213,563 + IAI46_00950 0.48 +0.2
213,564 - IAI46_00950 0.48 +1.0
213,572 - IAI46_00950 0.49 +0.1
213,622 + IAI46_00950 0.53 -0.1
213,623 - IAI46_00950 0.53 -0.4
213,709 - IAI46_00950 0.60 +0.8
213,768 - IAI46_00950 0.65 -0.3
213,787 - IAI46_00950 0.66 +0.2
213,856 + IAI46_00950 0.72 +0.7
214,021 - IAI46_00950 0.85 -0.4
214,088 + -0.3
214,088 + +0.3
214,089 - +0.9
214,089 - +0.1
214,089 - +0.7
214,089 - -0.2
214,154 - +0.1
214,248 - IAI46_00955 0.14 +0.7
214,306 - IAI46_00955 0.28 +0.4
214,343 - IAI46_00955 0.38 -0.2
214,343 - IAI46_00955 0.38 +0.8
214,472 + IAI46_00955 0.71 +0.2
214,473 - IAI46_00955 0.71 -0.7
214,574 + -0.9
214,575 - -0.2
214,606 - +0.5
214,623 + +0.2
214,623 + +0.1
214,624 - +0.1
214,624 - +0.3
214,626 + +0.5
214,626 + +0.6
214,626 + +0.4
214,627 - -0.6
214,627 - +1.0
214,627 - +0.5
214,627 - -0.6
214,661 + +0.1
214,706 + +0.3
214,706 + -0.7
214,710 + -0.3
214,710 + -0.1
214,710 + +0.0
214,714 + +1.0
214,715 - -1.1
214,715 - +1.4
214,715 - -0.3
214,719 - -0.3
214,738 + +0.2
214,739 - +0.3
214,929 - +0.2
214,932 + -0.6
214,932 + -0.1
214,962 + +1.2
214,963 - +0.4
215,011 - -0.9
215,031 + +0.7
215,031 + +0.2
215,116 + IAI46_00960 0.11 -0.2
215,209 + IAI46_00960 0.19 +0.1
215,209 + IAI46_00960 0.19 -0.4
215,210 - IAI46_00960 0.19 -0.4
215,258 + IAI46_00960 0.24 +0.5
215,258 + IAI46_00960 0.24 -0.8
215,258 + IAI46_00960 0.24 +0.4
215,258 + IAI46_00960 0.24 +1.3
215,258 + IAI46_00960 0.24 -0.9
215,259 - IAI46_00960 0.24 +0.1
215,279 - IAI46_00960 0.26 +0.1
215,329 + IAI46_00960 0.30 -2.0
215,329 + IAI46_00960 0.30 +0.3
215,329 + IAI46_00960 0.30 +0.2
215,329 + IAI46_00960 0.30 +0.1
215,330 - IAI46_00960 0.30 +0.1
215,330 - IAI46_00960 0.30 +0.3
215,330 - IAI46_00960 0.30 +0.9
215,330 - IAI46_00960 0.30 +1.1
215,330 - IAI46_00960 0.30 +0.2
215,330 - IAI46_00960 0.30 +0.5
215,330 - IAI46_00960 0.30 -0.3
215,330 - IAI46_00960 0.30 -0.1
215,330 - IAI46_00960 0.30 +0.4
215,370 + IAI46_00960 0.34 +1.2
215,412 + IAI46_00960 0.38 +0.2
215,412 + IAI46_00960 0.38 +0.7
215,412 + IAI46_00960 0.38 -0.8
215,455 + IAI46_00960 0.41 -0.3
215,455 + IAI46_00960 0.41 +0.3
215,455 + IAI46_00960 0.41 +0.3
215,455 + IAI46_00960 0.41 +0.2
215,455 + IAI46_00960 0.41 +0.1
215,455 + IAI46_00960 0.41 +1.4
215,455 + IAI46_00960 0.41 +0.2
215,456 - IAI46_00960 0.41 +0.4
215,513 - IAI46_00960 0.47 -2.2
215,586 + IAI46_00960 0.53 +0.1

Or see this region's nucleotide sequence