Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0144

Experiment: m.b. Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0142 and Echvi_0143 are separated by 17 nucleotidesEchvi_0143 and Echvi_0144 overlap by 4 nucleotidesEchvi_0144 and Echvi_0145 are separated by 724 nucleotides Echvi_0142: Echvi_0142 - Domain of Unknown Function (DUF1599)., at 142,128 to 142,679 _0142 Echvi_0143: Echvi_0143 - dihydropteroate synthase, at 142,697 to 143,581 _0143 Echvi_0144: Echvi_0144 - TIGR00159 family protein, at 143,578 to 144,444 _0144 Echvi_0145: Echvi_0145 - 2-amino-3-ketobutyrate coenzyme A ligase, at 145,169 to 146,362 _0145 Position (kb) 143 144 145Strain fitness (log2 ratio) -1 0 1 2at 143.571 kb on + strandat 143.573 kb on + strandat 143.765 kb on + strand, within Echvi_0144at 143.798 kb on + strand, within Echvi_0144at 144.162 kb on + strand, within Echvi_0144at 144.355 kb on + strand, within Echvi_0144at 144.356 kb on - strand, within Echvi_0144at 144.442 kb on + strandat 144.442 kb on + strandat 144.443 kb on - strandat 144.684 kb on + strandat 144.684 kb on + strandat 144.685 kb on - strandat 144.685 kb on - strandat 144.701 kb on + strandat 144.702 kb on - strandat 144.789 kb on + strandat 144.832 kb on - strandat 144.839 kb on - strandat 144.839 kb on - strandat 145.025 kb on + strandat 145.025 kb on + strandat 145.025 kb on + strandat 145.122 kb on - strandat 145.134 kb on + strandat 145.135 kb on - strandat 145.194 kb on - strandat 145.194 kb on - strandat 145.311 kb on + strand, within Echvi_0145at 145.312 kb on - strand, within Echvi_0145at 145.312 kb on - strand, within Echvi_0145at 145.312 kb on - strand, within Echvi_0145at 145.365 kb on + strand, within Echvi_0145at 145.366 kb on - strand, within Echvi_0145

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.2 mM
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143,571 + -0.5
143,573 + +2.6
143,765 + Echvi_0144 0.22 -0.7
143,798 + Echvi_0144 0.25 -1.7
144,162 + Echvi_0144 0.67 +0.6
144,355 + Echvi_0144 0.90 +0.6
144,356 - Echvi_0144 0.90 -0.7
144,442 + -0.7
144,442 + +0.8
144,443 - -0.2
144,684 + -0.4
144,684 + -0.9
144,685 - -0.5
144,685 - -1.4
144,701 + +0.3
144,702 - -0.6
144,789 + -1.1
144,832 - -0.3
144,839 - -1.0
144,839 - -0.6
145,025 + +0.4
145,025 + -0.0
145,025 + -0.3
145,122 - +0.3
145,134 + +0.2
145,135 - +0.1
145,194 - +1.0
145,194 - -1.0
145,311 + Echvi_0145 0.12 +0.1
145,312 - Echvi_0145 0.12 +1.7
145,312 - Echvi_0145 0.12 +1.8
145,312 - Echvi_0145 0.12 +0.1
145,365 + Echvi_0145 0.16 -1.5
145,366 - Echvi_0145 0.16 +0.7

Or see this region's nucleotide sequence