Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0181 and Atu0182 are separated by 82 nucleotides Atu0182 and Atu0183 are separated by 9 nucleotides Atu0183 and Atu0184 are separated by 141 nucleotides
Atu0181: Atu0181 - hypothetical protein, at 184,477 to 184,938
Atu0181
Atu0182: Atu0182 - transcriptional regulator, GntR family, at 185,021 to 185,758
Atu0182
Atu0183: Atu0183 - dihydrodipicolinate reductase, at 185,768 to 186,595
Atu0183
Atu0184: Atu0184 - glucokinase, at 186,737 to 187,759
Atu0184
Position (kb) 185
186
187 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 184.782 kb on - strand, within Atu0181 at 184.843 kb on + strand, within Atu0181 at 185.086 kb on + strand at 185.086 kb on + strand at 185.220 kb on + strand, within Atu0182 at 185.264 kb on - strand, within Atu0182 at 185.323 kb on + strand, within Atu0182 at 185.449 kb on + strand, within Atu0182 at 185.449 kb on + strand, within Atu0182 at 185.479 kb on + strand, within Atu0182 at 186.718 kb on - strand at 186.721 kb on + strand at 186.872 kb on - strand, within Atu0184 at 186.952 kb on + strand, within Atu0184 at 187.022 kb on - strand, within Atu0184 at 187.022 kb on - strand, within Atu0184 at 187.580 kb on + strand, within Atu0184 at 187.588 kb on - strand, within Atu0184
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 184,782 - Atu0181 0.66 -0.3 184,843 + Atu0181 0.79 +0.4 185,086 + +0.4 185,086 + -0.7 185,220 + Atu0182 0.27 +0.2 185,264 - Atu0182 0.33 -0.1 185,323 + Atu0182 0.41 +0.5 185,449 + Atu0182 0.58 -0.1 185,449 + Atu0182 0.58 +0.1 185,479 + Atu0182 0.62 +1.0 186,718 - +0.9 186,721 + +0.9 186,872 - Atu0184 0.13 -2.5 186,952 + Atu0184 0.21 -3.0 187,022 - Atu0184 0.28 -0.5 187,022 - Atu0184 0.28 -3.5 187,580 + Atu0184 0.82 -4.0 187,588 - Atu0184 0.83 -3.1
Or see this region's nucleotide sequence