Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS04050

Experiment: water (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS04035 and ABIE40_RS04040 are separated by 103 nucleotidesABIE40_RS04040 and ABIE40_RS04045 are separated by 6 nucleotidesABIE40_RS04045 and ABIE40_RS04050 are separated by 17 nucleotidesABIE40_RS04050 and ABIE40_RS04055 are separated by 87 nucleotides ABIE40_RS04035: ABIE40_RS04035 - aldehyde reductase, at 801,109 to 802,140 _RS04035 ABIE40_RS04040: ABIE40_RS04040 - pyrophosphatase, at 802,244 to 802,543 _RS04040 ABIE40_RS04045: ABIE40_RS04045 - GNAT family N-acetyltransferase, at 802,550 to 803,041 _RS04045 ABIE40_RS04050: ABIE40_RS04050 - metalloprotease TldD, at 803,059 to 804,474 _RS04050 ABIE40_RS04055: ABIE40_RS04055 - invasion associated locus B family protein, at 804,562 to 805,163 _RS04055 Position (kb) 803 804 805Strain fitness (log2 ratio) -2 -1 0 1 2 3at 802.195 kb on + strandat 802.195 kb on + strandat 802.196 kb on - strandat 802.196 kb on - strandat 802.196 kb on - strandat 802.196 kb on - strandat 802.196 kb on - strandat 802.226 kb on + strandat 802.244 kb on - strandat 802.290 kb on - strand, within ABIE40_RS04040at 802.542 kb on - strandat 802.610 kb on + strand, within ABIE40_RS04045at 802.610 kb on + strand, within ABIE40_RS04045at 802.610 kb on + strand, within ABIE40_RS04045at 802.611 kb on - strand, within ABIE40_RS04045at 803.084 kb on - strandat 803.276 kb on + strand, within ABIE40_RS04050at 803.276 kb on + strand, within ABIE40_RS04050at 803.277 kb on - strand, within ABIE40_RS04050at 803.277 kb on - strand, within ABIE40_RS04050at 803.348 kb on + strand, within ABIE40_RS04050at 803.349 kb on - strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.444 kb on + strand, within ABIE40_RS04050at 803.445 kb on - strand, within ABIE40_RS04050at 803.513 kb on + strand, within ABIE40_RS04050at 803.513 kb on + strand, within ABIE40_RS04050at 804.032 kb on - strand, within ABIE40_RS04050at 804.065 kb on + strand, within ABIE40_RS04050at 804.137 kb on + strand, within ABIE40_RS04050at 804.138 kb on - strand, within ABIE40_RS04050at 804.138 kb on - strand, within ABIE40_RS04050at 804.138 kb on - strand, within ABIE40_RS04050at 804.174 kb on - strand, within ABIE40_RS04050at 804.174 kb on - strand, within ABIE40_RS04050at 804.174 kb on - strand, within ABIE40_RS04050at 804.174 kb on - strand, within ABIE40_RS04050at 804.174 kb on - strand, within ABIE40_RS04050at 804.261 kb on - strand, within ABIE40_RS04050at 804.310 kb on - strand, within ABIE40_RS04050at 804.310 kb on - strand, within ABIE40_RS04050at 804.375 kb on + strandat 804.377 kb on + strandat 804.377 kb on + strandat 804.377 kb on + strandat 804.378 kb on - strandat 804.378 kb on - strandat 804.378 kb on - strandat 804.468 kb on + strandat 804.469 kb on - strandat 804.480 kb on + strandat 804.480 kb on + strandat 804.480 kb on + strandat 804.480 kb on + strandat 804.480 kb on + strandat 804.480 kb on + strandat 804.480 kb on + strandat 804.480 kb on + strandat 804.481 kb on - strandat 804.481 kb on - strandat 804.481 kb on - strandat 804.481 kb on - strandat 804.519 kb on + strandat 804.519 kb on + strandat 804.519 kb on + strandat 804.520 kb on - strandat 804.520 kb on - strandat 805.195 kb on - strandat 805.195 kb on - strandat 805.195 kb on - strandat 805.195 kb on - strandat 805.195 kb on - strandat 805.252 kb on - strandat 805.278 kb on + strandat 805.278 kb on + strandat 805.279 kb on - strandat 805.279 kb on - strandat 805.307 kb on - strandat 805.319 kb on + strandat 805.319 kb on + strandat 805.320 kb on - strandat 805.333 kb on + strandat 805.333 kb on + strandat 805.341 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water (C)
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802,195 + +0.5
802,195 + -1.3
802,196 - +0.7
802,196 - -0.2
802,196 - +0.8
802,196 - +0.5
802,196 - -0.2
802,226 + -0.8
802,244 - -0.1
802,290 - ABIE40_RS04040 0.15 -0.4
802,542 - -1.8
802,610 + ABIE40_RS04045 0.12 -0.2
802,610 + ABIE40_RS04045 0.12 +0.4
802,610 + ABIE40_RS04045 0.12 +1.6
802,611 - ABIE40_RS04045 0.12 +1.0
803,084 - -0.6
803,276 + ABIE40_RS04050 0.15 -2.3
803,276 + ABIE40_RS04050 0.15 -0.8
803,277 - ABIE40_RS04050 0.15 -1.2
803,277 - ABIE40_RS04050 0.15 -0.7
803,348 + ABIE40_RS04050 0.20 +0.3
803,349 - ABIE40_RS04050 0.20 +0.5
803,408 + ABIE40_RS04050 0.25 +1.3
803,408 + ABIE40_RS04050 0.25 +1.6
803,408 + ABIE40_RS04050 0.25 +1.0
803,408 + ABIE40_RS04050 0.25 -0.4
803,408 + ABIE40_RS04050 0.25 +0.6
803,408 + ABIE40_RS04050 0.25 +1.1
803,408 + ABIE40_RS04050 0.25 +1.6
803,408 + ABIE40_RS04050 0.25 -0.3
803,409 - ABIE40_RS04050 0.25 +0.3
803,409 - ABIE40_RS04050 0.25 +0.3
803,409 - ABIE40_RS04050 0.25 +0.4
803,409 - ABIE40_RS04050 0.25 +0.3
803,409 - ABIE40_RS04050 0.25 -0.3
803,409 - ABIE40_RS04050 0.25 -1.0
803,409 - ABIE40_RS04050 0.25 +2.8
803,409 - ABIE40_RS04050 0.25 -0.3
803,409 - ABIE40_RS04050 0.25 +0.4
803,409 - ABIE40_RS04050 0.25 -1.1
803,409 - ABIE40_RS04050 0.25 -0.7
803,409 - ABIE40_RS04050 0.25 -0.8
803,409 - ABIE40_RS04050 0.25 -0.2
803,409 - ABIE40_RS04050 0.25 +0.9
803,444 + ABIE40_RS04050 0.27 +0.4
803,445 - ABIE40_RS04050 0.27 +0.3
803,513 + ABIE40_RS04050 0.32 -0.7
803,513 + ABIE40_RS04050 0.32 +0.2
804,032 - ABIE40_RS04050 0.69 -0.1
804,065 + ABIE40_RS04050 0.71 +0.7
804,137 + ABIE40_RS04050 0.76 +1.5
804,138 - ABIE40_RS04050 0.76 +0.1
804,138 - ABIE40_RS04050 0.76 +0.4
804,138 - ABIE40_RS04050 0.76 -0.3
804,174 - ABIE40_RS04050 0.79 -0.4
804,174 - ABIE40_RS04050 0.79 +0.1
804,174 - ABIE40_RS04050 0.79 -0.6
804,174 - ABIE40_RS04050 0.79 +0.3
804,174 - ABIE40_RS04050 0.79 +0.8
804,261 - ABIE40_RS04050 0.85 -0.7
804,310 - ABIE40_RS04050 0.88 +1.5
804,310 - ABIE40_RS04050 0.88 +0.2
804,375 + +0.7
804,377 + +0.6
804,377 + -2.0
804,377 + -1.0
804,378 - -0.1
804,378 - +2.7
804,378 - -1.1
804,468 + -0.6
804,469 - +1.6
804,480 + +0.6
804,480 + -0.0
804,480 + +0.2
804,480 + -0.8
804,480 + +0.1
804,480 + -0.3
804,480 + +1.9
804,480 + -2.0
804,481 - +1.1
804,481 - -0.3
804,481 - -2.7
804,481 - +1.1
804,519 + -1.9
804,519 + +0.7
804,519 + +0.7
804,520 - +0.6
804,520 - +1.0
805,195 - +0.7
805,195 - +1.9
805,195 - +0.5
805,195 - +0.2
805,195 - -0.6
805,252 - +0.1
805,278 + +0.1
805,278 + +0.4
805,279 - -0.1
805,279 - -0.0
805,307 - -0.4
805,319 + -1.8
805,319 + +0.3
805,320 - -0.2
805,333 + +2.5
805,333 + -1.5
805,341 - -0.7

Or see this region's nucleotide sequence