Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29225 and ABID97_RS29230 are separated by 26 nucleotides ABID97_RS29230 and ABID97_RS29235 are separated by 149 nucleotides ABID97_RS29235 and ABID97_RS29240 are separated by 166 nucleotides ABID97_RS29240 and ABID97_RS29245 are separated by 158 nucleotides
ABID97_RS29225: ABID97_RS29225 - tripartite tricarboxylate transporter substrate binding protein, at 769,425 to 770,423
_RS29225
ABID97_RS29230: ABID97_RS29230 - DUF6130 family protein, at 770,450 to 770,920
_RS29230
ABID97_RS29235: ABID97_RS29235 - phosphotransferase, at 771,070 to 772,071
_RS29235
ABID97_RS29240: ABID97_RS29240 - hypothetical protein, at 772,238 to 772,513
_RS29240
ABID97_RS29245: ABID97_RS29245 - hypothetical protein, at 772,672 to 773,037
_RS29245
Position (kb) 771
772
773 Strain fitness (log2 ratio) -1
0
1 at 770.159 kb on + strand, within ABID97_RS29225 at 770.993 kb on - strand at 771.003 kb on - strand at 771.003 kb on - strand at 771.003 kb on - strand at 771.027 kb on - strand at 771.027 kb on - strand at 771.129 kb on - strand at 771.264 kb on - strand, within ABID97_RS29235 at 771.624 kb on - strand, within ABID97_RS29235 at 772.004 kb on + strand at 772.004 kb on + strand at 772.099 kb on - strand at 772.099 kb on - strand at 772.369 kb on - strand, within ABID97_RS29240
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 770,159 + ABID97_RS29225 0.73 -0.2 770,993 - -0.0 771,003 - +0.5 771,003 - -0.4 771,003 - +1.2 771,027 - -0.1 771,027 - -0.2 771,129 - -0.0 771,264 - ABID97_RS29235 0.19 -0.0 771,624 - ABID97_RS29235 0.55 -0.5 772,004 + -1.5 772,004 + +0.4 772,099 - +0.2 772,099 - -0.1 772,369 - ABID97_RS29240 0.47 -1.1
Or see this region's nucleotide sequence