Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25965

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25955 and ABID97_RS25960 are separated by 128 nucleotidesABID97_RS25960 and ABID97_RS25965 are separated by 13 nucleotidesABID97_RS25965 and ABID97_RS25970 are separated by 14 nucleotidesABID97_RS25970 and ABID97_RS25975 overlap by 4 nucleotides ABID97_RS25955: ABID97_RS25955 - hypothetical protein, at 115,137 to 115,817 _RS25955 ABID97_RS25960: ABID97_RS25960 - TonB family protein, at 115,946 to 116,167 _RS25960 ABID97_RS25965: ABID97_RS25965 - MaoC family dehydratase, at 116,181 to 117,266 _RS25965 ABID97_RS25970: ABID97_RS25970 - MaoC family dehydratase N-terminal domain-containing protein, at 117,281 to 118,147 _RS25970 ABID97_RS25975: ABID97_RS25975 - CoA transferase, at 118,144 to 119,379 _RS25975 Position (kb) 116 117 118Strain fitness (log2 ratio) -1 0 1at 116.218 kb on + strandat 116.477 kb on - strand, within ABID97_RS25965at 116.515 kb on + strand, within ABID97_RS25965at 116.894 kb on - strand, within ABID97_RS25965at 117.386 kb on - strand, within ABID97_RS25970at 117.906 kb on - strand, within ABID97_RS25970

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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116,218 + +0.6
116,477 - ABID97_RS25965 0.27 +0.4
116,515 + ABID97_RS25965 0.31 +0.5
116,894 - ABID97_RS25965 0.66 +0.2
117,386 - ABID97_RS25970 0.12 +0.3
117,906 - ABID97_RS25970 0.72 +0.1

Or see this region's nucleotide sequence