Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS14965 and ABID97_RS14970 are separated by 28 nucleotides ABID97_RS14970 and ABID97_RS14975 are separated by 29 nucleotides ABID97_RS14975 and ABID97_RS14980 are separated by 430 nucleotides ABID97_RS14980 and ABID97_RS14985 are separated by 16 nucleotides
ABID97_RS14965: ABID97_RS14965 - DegQ family serine endoprotease, at 3,110,033 to 3,111,502
_RS14965
ABID97_RS14970: ABID97_RS14970 - hypothetical protein, at 3,111,531 to 3,111,833
_RS14970
ABID97_RS14975: ABID97_RS14975 - hypothetical protein, at 3,111,863 to 3,112,078
_RS14975
ABID97_RS14980: ABID97_RS14980 - hypothetical protein, at 3,112,509 to 3,112,835
_RS14980
ABID97_RS14985: ABID97_RS14985 - hypothetical protein, at 3,112,852 to 3,113,064
_RS14985
Position (kb)
3111
3112
3113 Strain fitness (log2 ratio)
-2
-1
0
1 at 3111.864 kb on + strand at 3111.865 kb on - strand at 3111.949 kb on - strand, within ABID97_RS14975 at 3111.949 kb on - strand, within ABID97_RS14975 at 3111.996 kb on + strand, within ABID97_RS14975 at 3112.091 kb on + strand at 3112.091 kb on + strand at 3112.185 kb on + strand at 3112.516 kb on + strand at 3112.516 kb on + strand at 3112.517 kb on - strand at 3112.517 kb on - strand at 3112.576 kb on + strand, within ABID97_RS14980 at 3112.577 kb on - strand, within ABID97_RS14980 at 3112.720 kb on + strand, within ABID97_RS14980 at 3112.754 kb on - strand, within ABID97_RS14980 at 3112.994 kb on - strand, within ABID97_RS14985 at 3112.994 kb on - strand, within ABID97_RS14985 at 3113.057 kb on + strand at 3113.057 kb on + strand at 3113.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,111,864 + -1.0 3,111,865 - -0.4 3,111,949 - ABID97_RS14975 0.40 -0.7 3,111,949 - ABID97_RS14975 0.40 -1.3 3,111,996 + ABID97_RS14975 0.62 -0.4 3,112,091 + -2.4 3,112,091 + -0.9 3,112,185 + +0.9 3,112,516 + +0.2 3,112,516 + +0.4 3,112,517 - +1.0 3,112,517 - +0.2 3,112,576 + ABID97_RS14980 0.20 -0.4 3,112,577 - ABID97_RS14980 0.21 +0.1 3,112,720 + ABID97_RS14980 0.65 +0.1 3,112,754 - ABID97_RS14980 0.75 +1.5 3,112,994 - ABID97_RS14985 0.67 -0.6 3,112,994 - ABID97_RS14985 0.67 -1.2 3,113,057 + +0.3 3,113,057 + +0.9 3,113,057 + +0.6
Or see this region's nucleotide sequence