Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10025 and ABID97_RS10030 are separated by 7 nucleotides ABID97_RS10030 and ABID97_RS10035 are separated by 196 nucleotides ABID97_RS10035 and ABID97_RS10040 are separated by 16 nucleotides ABID97_RS10040 and ABID97_RS10045 are separated by 36 nucleotides
ABID97_RS10025: ABID97_RS10025 - DNA ligase D, at 2,083,717 to 2,086,309
_RS10025
ABID97_RS10030: ABID97_RS10030 - hypothetical protein, at 2,086,317 to 2,086,559
_RS10030
ABID97_RS10035: ABID97_RS10035 - dihydrofolate reductase, at 2,086,756 to 2,087,283
_RS10035
ABID97_RS10040: ABID97_RS10040 - thymidylate synthase, at 2,087,300 to 2,088,139
_RS10040
ABID97_RS10045: ABID97_RS10045 - nitrile hydratase subunit alpha, at 2,088,176 to 2,088,814
_RS10045
Position (kb)
2086
2087
2088 Strain fitness (log2 ratio)
-1
0
1 at 2086.229 kb on + strand at 2086.513 kb on + strand, within ABID97_RS10030 at 2086.514 kb on - strand, within ABID97_RS10030 at 2086.514 kb on - strand, within ABID97_RS10030 at 2086.576 kb on + strand at 2086.577 kb on - strand at 2086.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,086,229 + +0.1 2,086,513 + ABID97_RS10030 0.81 -0.8 2,086,514 - ABID97_RS10030 0.81 -0.9 2,086,514 - ABID97_RS10030 0.81 -0.1 2,086,576 + +0.1 2,086,577 - -0.6 2,086,577 - +0.2
Or see this region's nucleotide sequence