Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01125

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01120 and ABID97_RS01125 are separated by 24 nucleotidesABID97_RS01125 and ABID97_RS01130 are separated by 290 nucleotides ABID97_RS01120: ABID97_RS01120 - citrate synthase, at 225,945 to 227,111 _RS01120 ABID97_RS01125: ABID97_RS01125 - type 1 glutamine amidotransferase domain-containing protein, at 227,136 to 227,708 _RS01125 ABID97_RS01130: ABID97_RS01130 - tripartite tricarboxylate transporter substrate-binding protein, at 227,999 to 228,973 _RS01130 Position (kb) 227 228Strain fitness (log2 ratio) -1 0 1 2 3at 226.825 kb on - strand, within ABID97_RS01120at 227.749 kb on + strandat 227.750 kb on - strandat 227.750 kb on - strandat 227.827 kb on + strandat 227.828 kb on - strandat 227.847 kb on + strandat 228.335 kb on + strand, within ABID97_RS01130at 228.336 kb on - strand, within ABID97_RS01130at 228.402 kb on - strand, within ABID97_RS01130at 228.647 kb on + strand, within ABID97_RS01130

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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226,825 - ABID97_RS01120 0.75 -0.1
227,749 + +0.4
227,750 - +0.2
227,750 - -0.6
227,827 + +3.5
227,828 - +0.8
227,847 + +0.3
228,335 + ABID97_RS01130 0.34 +0.3
228,336 - ABID97_RS01130 0.35 +0.6
228,402 - ABID97_RS01130 0.41 +0.3
228,647 + ABID97_RS01130 0.66 +0.4

Or see this region's nucleotide sequence