Strain Fitness in Serratia liquefaciens MT49 around IAI46_25240

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25235 and IAI46_25240 are separated by 96 nucleotidesIAI46_25240 and IAI46_25245 are separated by 142 nucleotides IAI46_25235: IAI46_25235 - 4'-phosphopantetheinyl transferase superfamily protein, at 5,387,785 to 5,388,510 _25235 IAI46_25240: IAI46_25240 - SidA/IucD/PvdA family monooxygenase, at 5,388,607 to 5,389,920 _25240 IAI46_25245: IAI46_25245 - MBL fold metallo-hydrolase, at 5,390,063 to 5,390,863 _25245 Position (kb) 5388 5389 5390Strain fitness (log2 ratio) -2 -1 0 1 2at 5387.640 kb on + strandat 5387.640 kb on + strandat 5387.640 kb on + strandat 5387.641 kb on - strandat 5387.641 kb on - strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.656 kb on - strandat 5387.656 kb on - strandat 5387.681 kb on + strandat 5387.697 kb on - strandat 5387.701 kb on - strandat 5387.731 kb on - strandat 5387.749 kb on + strandat 5387.749 kb on + strandat 5387.877 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.900 kb on - strand, within IAI46_25235at 5387.900 kb on - strand, within IAI46_25235at 5387.900 kb on - strand, within IAI46_25235at 5387.945 kb on + strand, within IAI46_25235at 5388.042 kb on + strand, within IAI46_25235at 5388.172 kb on - strand, within IAI46_25235at 5388.245 kb on - strand, within IAI46_25235at 5388.261 kb on - strand, within IAI46_25235at 5388.313 kb on - strand, within IAI46_25235at 5388.356 kb on + strand, within IAI46_25235at 5388.356 kb on + strand, within IAI46_25235at 5388.356 kb on + strand, within IAI46_25235at 5388.356 kb on + strand, within IAI46_25235at 5388.511 kb on + strandat 5388.523 kb on - strandat 5388.523 kb on - strandat 5388.554 kb on + strandat 5388.554 kb on + strandat 5388.560 kb on - strandat 5388.595 kb on - strandat 5388.608 kb on + strandat 5388.613 kb on - strandat 5388.613 kb on - strandat 5388.625 kb on - strandat 5388.625 kb on - strandat 5388.628 kb on - strandat 5388.798 kb on - strand, within IAI46_25240at 5388.798 kb on - strand, within IAI46_25240at 5388.798 kb on - strand, within IAI46_25240at 5388.898 kb on + strand, within IAI46_25240at 5388.899 kb on - strand, within IAI46_25240at 5388.899 kb on - strand, within IAI46_25240at 5388.902 kb on + strand, within IAI46_25240at 5388.903 kb on - strand, within IAI46_25240at 5388.903 kb on - strand, within IAI46_25240at 5388.935 kb on - strand, within IAI46_25240at 5389.089 kb on + strand, within IAI46_25240at 5389.090 kb on - strand, within IAI46_25240at 5389.090 kb on - strand, within IAI46_25240at 5389.091 kb on + strand, within IAI46_25240at 5389.091 kb on + strand, within IAI46_25240at 5389.091 kb on + strand, within IAI46_25240at 5389.091 kb on + strand, within IAI46_25240at 5389.091 kb on + strand, within IAI46_25240at 5389.091 kb on + strand, within IAI46_25240at 5389.091 kb on + strand, within IAI46_25240at 5389.091 kb on + strand, within IAI46_25240at 5389.091 kb on + strand, within IAI46_25240at 5389.092 kb on - strand, within IAI46_25240at 5389.092 kb on - strand, within IAI46_25240at 5389.111 kb on - strand, within IAI46_25240at 5389.111 kb on - strand, within IAI46_25240at 5389.114 kb on + strand, within IAI46_25240at 5389.114 kb on + strand, within IAI46_25240at 5389.114 kb on + strand, within IAI46_25240at 5389.115 kb on - strand, within IAI46_25240at 5389.115 kb on - strand, within IAI46_25240at 5389.115 kb on - strand, within IAI46_25240at 5389.115 kb on - strand, within IAI46_25240at 5389.115 kb on - strand, within IAI46_25240at 5389.119 kb on + strand, within IAI46_25240at 5389.119 kb on + strand, within IAI46_25240at 5389.119 kb on + strand, within IAI46_25240at 5389.119 kb on + strand, within IAI46_25240at 5389.119 kb on + strand, within IAI46_25240at 5389.120 kb on - strand, within IAI46_25240at 5389.120 kb on - strand, within IAI46_25240at 5389.120 kb on - strand, within IAI46_25240at 5389.128 kb on + strand, within IAI46_25240at 5389.128 kb on + strand, within IAI46_25240at 5389.129 kb on - strand, within IAI46_25240at 5389.129 kb on - strand, within IAI46_25240at 5389.129 kb on - strand, within IAI46_25240at 5389.131 kb on + strand, within IAI46_25240at 5389.131 kb on + strand, within IAI46_25240at 5389.131 kb on + strand, within IAI46_25240at 5389.132 kb on - strand, within IAI46_25240at 5389.132 kb on - strand, within IAI46_25240at 5389.132 kb on - strand, within IAI46_25240at 5389.192 kb on - strand, within IAI46_25240at 5389.209 kb on - strand, within IAI46_25240at 5389.223 kb on + strand, within IAI46_25240at 5389.224 kb on - strand, within IAI46_25240at 5389.224 kb on - strand, within IAI46_25240at 5389.392 kb on + strand, within IAI46_25240at 5389.488 kb on + strand, within IAI46_25240at 5389.489 kb on - strand, within IAI46_25240at 5389.489 kb on - strand, within IAI46_25240at 5389.489 kb on - strand, within IAI46_25240at 5389.522 kb on + strand, within IAI46_25240at 5389.523 kb on - strand, within IAI46_25240at 5389.591 kb on + strand, within IAI46_25240at 5389.591 kb on + strand, within IAI46_25240at 5389.591 kb on + strand, within IAI46_25240at 5389.591 kb on + strand, within IAI46_25240at 5389.592 kb on - strand, within IAI46_25240at 5389.596 kb on + strand, within IAI46_25240at 5389.597 kb on - strand, within IAI46_25240at 5389.599 kb on + strand, within IAI46_25240at 5389.600 kb on - strand, within IAI46_25240at 5389.616 kb on + strand, within IAI46_25240at 5389.694 kb on + strand, within IAI46_25240at 5389.694 kb on + strand, within IAI46_25240at 5389.754 kb on + strand, within IAI46_25240at 5389.754 kb on + strand, within IAI46_25240at 5389.755 kb on - strand, within IAI46_25240at 5389.755 kb on - strand, within IAI46_25240at 5389.755 kb on - strand, within IAI46_25240at 5389.755 kb on - strand, within IAI46_25240at 5389.755 kb on - strand, within IAI46_25240at 5389.764 kb on + strand, within IAI46_25240at 5389.764 kb on + strand, within IAI46_25240at 5389.764 kb on + strand, within IAI46_25240at 5389.765 kb on - strand, within IAI46_25240at 5389.765 kb on - strand, within IAI46_25240at 5389.767 kb on - strand, within IAI46_25240at 5389.829 kb on + strandat 5389.829 kb on + strandat 5389.851 kb on - strandat 5389.851 kb on - strandat 5389.954 kb on + strandat 5389.954 kb on + strandat 5389.955 kb on - strandat 5389.955 kb on - strandat 5389.960 kb on + strandat 5389.960 kb on + strandat 5389.961 kb on - strandat 5390.064 kb on + strandat 5390.064 kb on + strandat 5390.065 kb on - strandat 5390.065 kb on - strandat 5390.153 kb on + strand, within IAI46_25245at 5390.348 kb on - strand, within IAI46_25245at 5390.376 kb on + strand, within IAI46_25245at 5390.376 kb on + strand, within IAI46_25245at 5390.376 kb on + strand, within IAI46_25245at 5390.377 kb on - strand, within IAI46_25245at 5390.377 kb on - strand, within IAI46_25245at 5390.377 kb on - strand, within IAI46_25245at 5390.377 kb on - strand, within IAI46_25245at 5390.412 kb on + strand, within IAI46_25245at 5390.453 kb on - strand, within IAI46_25245at 5390.453 kb on - strand, within IAI46_25245at 5390.468 kb on - strand, within IAI46_25245at 5390.487 kb on + strand, within IAI46_25245at 5390.487 kb on + strand, within IAI46_25245at 5390.488 kb on - strand, within IAI46_25245at 5390.488 kb on - strand, within IAI46_25245at 5390.488 kb on - strand, within IAI46_25245at 5390.509 kb on - strand, within IAI46_25245at 5390.509 kb on - strand, within IAI46_25245at 5390.556 kb on - strand, within IAI46_25245at 5390.556 kb on - strand, within IAI46_25245at 5390.572 kb on - strand, within IAI46_25245at 5390.572 kb on - strand, within IAI46_25245at 5390.602 kb on + strand, within IAI46_25245at 5390.602 kb on + strand, within IAI46_25245at 5390.603 kb on - strand, within IAI46_25245at 5390.603 kb on - strand, within IAI46_25245at 5390.649 kb on + strand, within IAI46_25245at 5390.650 kb on - strand, within IAI46_25245at 5390.650 kb on - strand, within IAI46_25245at 5390.693 kb on + strand, within IAI46_25245at 5390.694 kb on - strand, within IAI46_25245at 5390.747 kb on + strand, within IAI46_25245at 5390.747 kb on + strand, within IAI46_25245at 5390.784 kb on - strandat 5390.784 kb on - strandat 5390.856 kb on - strandat 5390.856 kb on - strandat 5390.856 kb on - strandat 5390.901 kb on + strandat 5390.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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5,387,640 + +0.6
5,387,640 + -0.7
5,387,640 + -0.0
5,387,641 - -1.0
5,387,641 - +0.4
5,387,655 + +0.7
5,387,655 + +1.2
5,387,655 + +0.4
5,387,655 + +0.1
5,387,655 + +0.2
5,387,655 + -0.4
5,387,656 - +0.1
5,387,656 - +0.4
5,387,681 + -0.4
5,387,697 - -0.5
5,387,701 - +0.6
5,387,731 - +0.3
5,387,749 + +0.3
5,387,749 + +0.5
5,387,877 + IAI46_25235 0.13 -0.2
5,387,888 + IAI46_25235 0.14 -0.1
5,387,888 + IAI46_25235 0.14 +0.8
5,387,888 + IAI46_25235 0.14 +0.4
5,387,888 + IAI46_25235 0.14 +0.0
5,387,900 - IAI46_25235 0.16 -0.5
5,387,900 - IAI46_25235 0.16 +1.3
5,387,900 - IAI46_25235 0.16 +0.1
5,387,945 + IAI46_25235 0.22 -0.7
5,388,042 + IAI46_25235 0.35 +0.7
5,388,172 - IAI46_25235 0.53 -0.4
5,388,245 - IAI46_25235 0.63 -0.1
5,388,261 - IAI46_25235 0.66 -0.8
5,388,313 - IAI46_25235 0.73 -0.4
5,388,356 + IAI46_25235 0.79 +0.2
5,388,356 + IAI46_25235 0.79 +0.3
5,388,356 + IAI46_25235 0.79 -0.5
5,388,356 + IAI46_25235 0.79 -0.2
5,388,511 + -0.4
5,388,523 - +1.0
5,388,523 - +0.1
5,388,554 + -1.1
5,388,554 + -0.3
5,388,560 - +0.3
5,388,595 - +0.5
5,388,608 + -2.0
5,388,613 - +0.8
5,388,613 - -0.5
5,388,625 - -0.2
5,388,625 - -0.5
5,388,628 - +0.1
5,388,798 - IAI46_25240 0.15 +0.2
5,388,798 - IAI46_25240 0.15 +0.1
5,388,798 - IAI46_25240 0.15 +0.2
5,388,898 + IAI46_25240 0.22 +0.3
5,388,899 - IAI46_25240 0.22 +0.5
5,388,899 - IAI46_25240 0.22 +0.3
5,388,902 + IAI46_25240 0.22 -0.3
5,388,903 - IAI46_25240 0.23 -0.0
5,388,903 - IAI46_25240 0.23 +0.6
5,388,935 - IAI46_25240 0.25 +1.4
5,389,089 + IAI46_25240 0.37 -0.7
5,389,090 - IAI46_25240 0.37 -0.4
5,389,090 - IAI46_25240 0.37 -0.5
5,389,091 + IAI46_25240 0.37 -0.2
5,389,091 + IAI46_25240 0.37 +0.4
5,389,091 + IAI46_25240 0.37 +0.3
5,389,091 + IAI46_25240 0.37 +1.3
5,389,091 + IAI46_25240 0.37 -0.2
5,389,091 + IAI46_25240 0.37 -0.7
5,389,091 + IAI46_25240 0.37 +0.2
5,389,091 + IAI46_25240 0.37 +0.2
5,389,091 + IAI46_25240 0.37 -0.4
5,389,092 - IAI46_25240 0.37 -1.3
5,389,092 - IAI46_25240 0.37 +0.3
5,389,111 - IAI46_25240 0.38 +0.1
5,389,111 - IAI46_25240 0.38 -0.5
5,389,114 + IAI46_25240 0.39 +0.4
5,389,114 + IAI46_25240 0.39 +0.3
5,389,114 + IAI46_25240 0.39 +0.5
5,389,115 - IAI46_25240 0.39 +0.4
5,389,115 - IAI46_25240 0.39 -0.4
5,389,115 - IAI46_25240 0.39 +0.4
5,389,115 - IAI46_25240 0.39 +0.7
5,389,115 - IAI46_25240 0.39 -1.1
5,389,119 + IAI46_25240 0.39 -0.6
5,389,119 + IAI46_25240 0.39 +0.2
5,389,119 + IAI46_25240 0.39 +0.2
5,389,119 + IAI46_25240 0.39 +0.1
5,389,119 + IAI46_25240 0.39 -0.4
5,389,120 - IAI46_25240 0.39 -1.3
5,389,120 - IAI46_25240 0.39 -1.3
5,389,120 - IAI46_25240 0.39 -0.7
5,389,128 + IAI46_25240 0.40 -0.6
5,389,128 + IAI46_25240 0.40 -0.1
5,389,129 - IAI46_25240 0.40 +0.5
5,389,129 - IAI46_25240 0.40 -0.2
5,389,129 - IAI46_25240 0.40 +1.3
5,389,131 + IAI46_25240 0.40 -0.1
5,389,131 + IAI46_25240 0.40 +0.1
5,389,131 + IAI46_25240 0.40 +0.4
5,389,132 - IAI46_25240 0.40 +0.3
5,389,132 - IAI46_25240 0.40 -0.4
5,389,132 - IAI46_25240 0.40 +0.2
5,389,192 - IAI46_25240 0.45 -0.1
5,389,209 - IAI46_25240 0.46 +0.5
5,389,223 + IAI46_25240 0.47 +0.8
5,389,224 - IAI46_25240 0.47 -0.1
5,389,224 - IAI46_25240 0.47 -0.0
5,389,392 + IAI46_25240 0.60 -0.1
5,389,488 + IAI46_25240 0.67 +0.3
5,389,489 - IAI46_25240 0.67 +0.1
5,389,489 - IAI46_25240 0.67 -0.7
5,389,489 - IAI46_25240 0.67 +0.4
5,389,522 + IAI46_25240 0.70 +0.4
5,389,523 - IAI46_25240 0.70 -0.2
5,389,591 + IAI46_25240 0.75 -0.0
5,389,591 + IAI46_25240 0.75 +0.8
5,389,591 + IAI46_25240 0.75 -0.2
5,389,591 + IAI46_25240 0.75 +1.8
5,389,592 - IAI46_25240 0.75 -0.6
5,389,596 + IAI46_25240 0.75 -0.7
5,389,597 - IAI46_25240 0.75 +0.5
5,389,599 + IAI46_25240 0.75 -0.8
5,389,600 - IAI46_25240 0.76 -0.2
5,389,616 + IAI46_25240 0.77 +0.9
5,389,694 + IAI46_25240 0.83 +0.2
5,389,694 + IAI46_25240 0.83 +0.2
5,389,754 + IAI46_25240 0.87 +1.4
5,389,754 + IAI46_25240 0.87 +1.3
5,389,755 - IAI46_25240 0.87 +0.5
5,389,755 - IAI46_25240 0.87 -0.4
5,389,755 - IAI46_25240 0.87 -0.1
5,389,755 - IAI46_25240 0.87 +0.3
5,389,755 - IAI46_25240 0.87 -0.3
5,389,764 + IAI46_25240 0.88 +1.1
5,389,764 + IAI46_25240 0.88 +0.3
5,389,764 + IAI46_25240 0.88 +0.5
5,389,765 - IAI46_25240 0.88 +0.2
5,389,765 - IAI46_25240 0.88 +0.6
5,389,767 - IAI46_25240 0.88 +0.9
5,389,829 + +0.3
5,389,829 + -0.4
5,389,851 - -0.1
5,389,851 - +0.2
5,389,954 + -0.5
5,389,954 + +0.5
5,389,955 - +1.0
5,389,955 - -0.1
5,389,960 + -0.4
5,389,960 + -0.3
5,389,961 - -0.3
5,390,064 + -0.5
5,390,064 + -0.4
5,390,065 - -0.9
5,390,065 - -0.4
5,390,153 + IAI46_25245 0.11 +1.7
5,390,348 - IAI46_25245 0.36 +0.1
5,390,376 + IAI46_25245 0.39 -0.1
5,390,376 + IAI46_25245 0.39 -0.8
5,390,376 + IAI46_25245 0.39 -0.5
5,390,377 - IAI46_25245 0.39 -0.2
5,390,377 - IAI46_25245 0.39 +0.1
5,390,377 - IAI46_25245 0.39 +0.2
5,390,377 - IAI46_25245 0.39 -1.2
5,390,412 + IAI46_25245 0.44 +0.3
5,390,453 - IAI46_25245 0.49 -0.6
5,390,453 - IAI46_25245 0.49 +0.2
5,390,468 - IAI46_25245 0.51 -1.1
5,390,487 + IAI46_25245 0.53 +0.8
5,390,487 + IAI46_25245 0.53 -0.4
5,390,488 - IAI46_25245 0.53 -0.1
5,390,488 - IAI46_25245 0.53 -0.0
5,390,488 - IAI46_25245 0.53 +0.6
5,390,509 - IAI46_25245 0.56 -0.3
5,390,509 - IAI46_25245 0.56 +0.4
5,390,556 - IAI46_25245 0.62 +0.3
5,390,556 - IAI46_25245 0.62 +0.6
5,390,572 - IAI46_25245 0.64 -0.7
5,390,572 - IAI46_25245 0.64 +0.2
5,390,602 + IAI46_25245 0.67 +0.0
5,390,602 + IAI46_25245 0.67 +0.1
5,390,603 - IAI46_25245 0.67 -1.0
5,390,603 - IAI46_25245 0.67 -0.1
5,390,649 + IAI46_25245 0.73 -0.1
5,390,650 - IAI46_25245 0.73 +0.2
5,390,650 - IAI46_25245 0.73 +0.0
5,390,693 + IAI46_25245 0.79 -0.4
5,390,694 - IAI46_25245 0.79 +1.2
5,390,747 + IAI46_25245 0.85 -0.4
5,390,747 + IAI46_25245 0.85 +0.7
5,390,784 - -0.9
5,390,784 - +1.6
5,390,856 - +0.3
5,390,856 - -0.5
5,390,856 - +0.3
5,390,901 + -0.2
5,390,915 + +0.3

Or see this region's nucleotide sequence