Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24200 and IAI46_24205 are separated by 315 nucleotides IAI46_24205 and IAI46_24210 are separated by 8 nucleotides
IAI46_24200: IAI46_24200 - 5'-nucleotidase C-terminal domain-containing protein, at 5,158,089 to 5,159,987
_24200
IAI46_24205: IAI46_24205 - 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ, at 5,160,303 to 5,161,061
_24205
IAI46_24210: IAI46_24210 - oligopeptidase A, at 5,161,070 to 5,163,112
_24210
Position (kb) 5160
5161
5162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5159.495 kb on + strand, within IAI46_24200 at 5159.496 kb on - strand, within IAI46_24200 at 5159.508 kb on - strand, within IAI46_24200 at 5159.508 kb on - strand, within IAI46_24200 at 5159.545 kb on + strand, within IAI46_24200 at 5159.557 kb on + strand, within IAI46_24200 at 5159.558 kb on - strand, within IAI46_24200 at 5159.583 kb on - strand, within IAI46_24200 at 5159.680 kb on + strand, within IAI46_24200 at 5159.680 kb on + strand, within IAI46_24200 at 5159.680 kb on + strand, within IAI46_24200 at 5159.681 kb on - strand, within IAI46_24200 at 5159.681 kb on - strand, within IAI46_24200 at 5159.885 kb on + strand at 5159.919 kb on - strand at 5159.948 kb on + strand at 5159.988 kb on + strand at 5159.988 kb on + strand at 5159.989 kb on - strand at 5159.989 kb on - strand at 5159.995 kb on + strand at 5159.995 kb on + strand at 5159.996 kb on - strand at 5159.996 kb on - strand at 5160.000 kb on - strand at 5160.001 kb on + strand at 5160.001 kb on + strand at 5160.001 kb on + strand at 5160.002 kb on - strand at 5160.052 kb on + strand at 5160.053 kb on - strand at 5160.097 kb on + strand at 5160.097 kb on + strand at 5160.097 kb on + strand at 5160.097 kb on + strand at 5160.105 kb on + strand at 5160.105 kb on + strand at 5160.117 kb on + strand at 5160.117 kb on + strand at 5160.117 kb on + strand at 5160.118 kb on - strand at 5160.118 kb on - strand at 5160.124 kb on + strand at 5160.128 kb on + strand at 5160.128 kb on + strand at 5160.175 kb on + strand at 5160.176 kb on - strand at 5160.176 kb on - strand at 5160.183 kb on + strand at 5160.183 kb on + strand at 5160.183 kb on + strand at 5160.183 kb on + strand at 5160.184 kb on - strand at 5160.184 kb on - strand at 5160.278 kb on + strand at 5160.296 kb on + strand at 5160.296 kb on + strand at 5160.296 kb on + strand at 5160.296 kb on + strand at 5160.296 kb on + strand at 5160.297 kb on - strand at 5160.308 kb on + strand at 5160.308 kb on + strand at 5160.308 kb on + strand at 5160.308 kb on + strand at 5160.309 kb on - strand at 5160.309 kb on - strand at 5160.309 kb on - strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.326 kb on + strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.327 kb on - strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.328 kb on + strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.329 kb on - strand at 5160.330 kb on + strand at 5160.330 kb on + strand at 5160.330 kb on + strand at 5160.330 kb on + strand at 5160.330 kb on + strand at 5160.330 kb on + strand at 5160.330 kb on + strand at 5160.330 kb on + strand at 5160.330 kb on + strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.331 kb on - strand at 5160.332 kb on + strand at 5160.333 kb on - strand at 5160.380 kb on + strand, within IAI46_24205 at 5160.411 kb on - strand, within IAI46_24205 at 5160.542 kb on - strand, within IAI46_24205 at 5160.545 kb on + strand, within IAI46_24205 at 5160.545 kb on + strand, within IAI46_24205 at 5160.546 kb on - strand, within IAI46_24205 at 5160.546 kb on - strand, within IAI46_24205 at 5160.546 kb on - strand, within IAI46_24205 at 5160.546 kb on - strand, within IAI46_24205 at 5160.546 kb on - strand, within IAI46_24205 at 5160.546 kb on - strand, within IAI46_24205 at 5160.546 kb on - strand, within IAI46_24205 at 5160.546 kb on - strand, within IAI46_24205 at 5160.557 kb on - strand, within IAI46_24205 at 5160.557 kb on - strand, within IAI46_24205 at 5160.557 kb on - strand, within IAI46_24205 at 5160.557 kb on - strand, within IAI46_24205 at 5160.777 kb on - strand, within IAI46_24205 at 5160.872 kb on + strand, within IAI46_24205 at 5160.895 kb on + strand, within IAI46_24205 at 5160.896 kb on - strand, within IAI46_24205 at 5160.926 kb on + strand, within IAI46_24205 at 5160.927 kb on - strand, within IAI46_24205 at 5161.010 kb on + strand at 5161.010 kb on + strand at 5161.011 kb on - strand at 5161.044 kb on + strand at 5161.045 kb on - strand at 5161.045 kb on - strand at 5161.047 kb on + strand at 5161.048 kb on - strand at 5161.071 kb on + strand at 5161.078 kb on + strand at 5161.099 kb on + strand at 5161.099 kb on + strand at 5161.099 kb on + strand at 5161.100 kb on - strand at 5161.100 kb on - strand at 5161.100 kb on - strand at 5161.100 kb on - strand at 5161.240 kb on - strand at 5161.272 kb on + strand at 5161.272 kb on + strand at 5161.272 kb on + strand at 5161.272 kb on + strand at 5161.273 kb on - strand at 5161.273 kb on - strand at 5161.278 kb on + strand, within IAI46_24210 at 5161.279 kb on - strand, within IAI46_24210 at 5161.279 kb on - strand, within IAI46_24210 at 5161.279 kb on - strand, within IAI46_24210 at 5161.279 kb on - strand, within IAI46_24210 at 5161.279 kb on - strand, within IAI46_24210 at 5161.279 kb on - strand, within IAI46_24210 at 5161.279 kb on - strand, within IAI46_24210 at 5161.281 kb on + strand, within IAI46_24210 at 5161.281 kb on + strand, within IAI46_24210 at 5161.488 kb on + strand, within IAI46_24210 at 5161.562 kb on - strand, within IAI46_24210 at 5161.681 kb on + strand, within IAI46_24210 at 5161.681 kb on + strand, within IAI46_24210 at 5161.681 kb on + strand, within IAI46_24210 at 5161.681 kb on + strand, within IAI46_24210 at 5161.682 kb on - strand, within IAI46_24210 at 5161.682 kb on - strand, within IAI46_24210 at 5161.682 kb on - strand, within IAI46_24210 at 5161.682 kb on - strand, within IAI46_24210 at 5161.682 kb on - strand, within IAI46_24210 at 5161.682 kb on - strand, within IAI46_24210 at 5161.774 kb on + strand, within IAI46_24210 at 5161.775 kb on - strand, within IAI46_24210 at 5161.785 kb on + strand, within IAI46_24210 at 5161.785 kb on + strand, within IAI46_24210 at 5161.786 kb on - strand, within IAI46_24210 at 5161.828 kb on + strand, within IAI46_24210 at 5161.878 kb on + strand, within IAI46_24210 at 5161.878 kb on + strand, within IAI46_24210 at 5161.879 kb on - strand, within IAI46_24210 at 5161.891 kb on - strand, within IAI46_24210 at 5161.957 kb on + strand, within IAI46_24210 at 5161.970 kb on - strand, within IAI46_24210 at 5161.970 kb on - strand, within IAI46_24210 at 5161.992 kb on + strand, within IAI46_24210 at 5161.993 kb on - strand, within IAI46_24210 at 5162.024 kb on + strand, within IAI46_24210 at 5162.024 kb on + strand, within IAI46_24210 at 5162.024 kb on + strand, within IAI46_24210 at 5162.024 kb on + strand, within IAI46_24210 at 5162.025 kb on - strand, within IAI46_24210 at 5162.025 kb on - strand, within IAI46_24210 at 5162.046 kb on + strand, within IAI46_24210 at 5162.047 kb on - strand, within IAI46_24210 at 5162.047 kb on - strand, within IAI46_24210
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 5,159,495 + IAI46_24200 0.74 -0.7 5,159,496 - IAI46_24200 0.74 -1.6 5,159,508 - IAI46_24200 0.75 +0.6 5,159,508 - IAI46_24200 0.75 -0.3 5,159,545 + IAI46_24200 0.77 -0.1 5,159,557 + IAI46_24200 0.77 -1.3 5,159,558 - IAI46_24200 0.77 -0.6 5,159,583 - IAI46_24200 0.79 +0.3 5,159,680 + IAI46_24200 0.84 +1.1 5,159,680 + IAI46_24200 0.84 +1.2 5,159,680 + IAI46_24200 0.84 +0.6 5,159,681 - IAI46_24200 0.84 -0.1 5,159,681 - IAI46_24200 0.84 +0.9 5,159,885 + -0.6 5,159,919 - -0.3 5,159,948 + +0.5 5,159,988 + +0.6 5,159,988 + +0.4 5,159,989 - +0.6 5,159,989 - +0.1 5,159,995 + +0.4 5,159,995 + +0.4 5,159,996 - +0.2 5,159,996 - +0.4 5,160,000 - +1.0 5,160,001 + -0.2 5,160,001 + -0.1 5,160,001 + +0.4 5,160,002 - +0.3 5,160,052 + +0.4 5,160,053 - -1.0 5,160,097 + +0.3 5,160,097 + +1.3 5,160,097 + -0.0 5,160,097 + -0.0 5,160,105 + -0.4 5,160,105 + -0.5 5,160,117 + -0.1 5,160,117 + +0.5 5,160,117 + -0.2 5,160,118 - +0.4 5,160,118 - -1.1 5,160,124 + +0.4 5,160,128 + +1.0 5,160,128 + +0.8 5,160,175 + -0.0 5,160,176 - +0.5 5,160,176 - +0.4 5,160,183 + +0.3 5,160,183 + +0.3 5,160,183 + +0.1 5,160,183 + +1.5 5,160,184 - +0.7 5,160,184 - +0.6 5,160,278 + -0.6 5,160,296 + +1.6 5,160,296 + +1.3 5,160,296 + -0.1 5,160,296 + -0.1 5,160,296 + +0.2 5,160,297 - -0.5 5,160,308 + +0.3 5,160,308 + -0.3 5,160,308 + +0.1 5,160,308 + -0.5 5,160,309 - +0.9 5,160,309 - -0.5 5,160,309 - -0.9 5,160,326 + +0.0 5,160,326 + -0.1 5,160,326 + +0.5 5,160,326 + +0.6 5,160,326 + -0.1 5,160,326 + +0.3 5,160,326 + -0.1 5,160,326 + -0.0 5,160,326 + +1.1 5,160,326 + +0.4 5,160,326 + -0.9 5,160,326 + +0.6 5,160,327 - -0.9 5,160,327 - -0.6 5,160,327 - +0.8 5,160,327 - +1.2 5,160,327 - -0.0 5,160,327 - +0.6 5,160,327 - +2.0 5,160,327 - +0.4 5,160,327 - +0.2 5,160,327 - +0.0 5,160,327 - -1.4 5,160,327 - +0.1 5,160,327 - -0.2 5,160,327 - +1.1 5,160,327 - +0.3 5,160,327 - +0.9 5,160,327 - +0.8 5,160,327 - +0.9 5,160,328 + +0.8 5,160,328 + -0.1 5,160,328 + +0.2 5,160,328 + -0.9 5,160,328 + +0.3 5,160,328 + +1.2 5,160,328 + -0.4 5,160,328 + +0.8 5,160,328 + -0.2 5,160,328 + -0.9 5,160,328 + -2.0 5,160,328 + -0.2 5,160,328 + +0.1 5,160,328 + +0.1 5,160,328 + -1.7 5,160,328 + +0.1 5,160,328 + +0.4 5,160,328 + -0.2 5,160,328 + -0.5 5,160,328 + +0.3 5,160,328 + +0.9 5,160,328 + +0.5 5,160,328 + +0.1 5,160,328 + -0.3 5,160,328 + -0.2 5,160,329 - -0.2 5,160,329 - -0.2 5,160,329 - +0.5 5,160,329 - +1.2 5,160,329 - +0.5 5,160,329 - +0.4 5,160,329 - -0.2 5,160,329 - -0.3 5,160,329 - +0.0 5,160,329 - +0.3 5,160,329 - +0.1 5,160,329 - +0.9 5,160,329 - +0.3 5,160,329 - -1.1 5,160,329 - -0.3 5,160,329 - +0.4 5,160,329 - -0.2 5,160,329 - -0.5 5,160,329 - +0.5 5,160,329 - +2.0 5,160,329 - +1.2 5,160,329 - +0.7 5,160,330 + +0.6 5,160,330 + +1.0 5,160,330 + +1.2 5,160,330 + +1.0 5,160,330 + +1.3 5,160,330 + +0.7 5,160,330 + -0.0 5,160,330 + +0.1 5,160,330 + +0.9 5,160,331 - +0.2 5,160,331 - -0.2 5,160,331 - +0.1 5,160,331 - +0.5 5,160,331 - +0.2 5,160,331 - -0.1 5,160,331 - +1.1 5,160,331 - -0.1 5,160,331 - +0.2 5,160,331 - +0.4 5,160,331 - +0.4 5,160,331 - +0.5 5,160,331 - +1.0 5,160,331 - -1.9 5,160,331 - -1.2 5,160,332 + +0.3 5,160,333 - -0.2 5,160,380 + IAI46_24205 0.10 +0.4 5,160,411 - IAI46_24205 0.14 +0.3 5,160,542 - IAI46_24205 0.31 -0.2 5,160,545 + IAI46_24205 0.32 -0.3 5,160,545 + IAI46_24205 0.32 -0.7 5,160,546 - IAI46_24205 0.32 +0.6 5,160,546 - IAI46_24205 0.32 +1.0 5,160,546 - IAI46_24205 0.32 +1.1 5,160,546 - IAI46_24205 0.32 -1.0 5,160,546 - IAI46_24205 0.32 +0.4 5,160,546 - IAI46_24205 0.32 +0.2 5,160,546 - IAI46_24205 0.32 -0.3 5,160,546 - IAI46_24205 0.32 -0.2 5,160,557 - IAI46_24205 0.33 +0.1 5,160,557 - IAI46_24205 0.33 -0.8 5,160,557 - IAI46_24205 0.33 +0.2 5,160,557 - IAI46_24205 0.33 -0.4 5,160,777 - IAI46_24205 0.62 +0.1 5,160,872 + IAI46_24205 0.75 -0.1 5,160,895 + IAI46_24205 0.78 +0.5 5,160,896 - IAI46_24205 0.78 +0.2 5,160,926 + IAI46_24205 0.82 -0.3 5,160,927 - IAI46_24205 0.82 +0.7 5,161,010 + +0.2 5,161,010 + -0.8 5,161,011 - +0.1 5,161,044 + +1.0 5,161,045 - -0.9 5,161,045 - +0.3 5,161,047 + +0.5 5,161,048 - +1.1 5,161,071 + +1.6 5,161,078 + -1.2 5,161,099 + +0.5 5,161,099 + +0.2 5,161,099 + -1.3 5,161,100 - +0.3 5,161,100 - +0.1 5,161,100 - +0.6 5,161,100 - +0.6 5,161,240 - -0.3 5,161,272 + -0.1 5,161,272 + -1.0 5,161,272 + +0.0 5,161,272 + +0.1 5,161,273 - -0.1 5,161,273 - +1.5 5,161,278 + IAI46_24210 0.10 +1.2 5,161,279 - IAI46_24210 0.10 +1.1 5,161,279 - IAI46_24210 0.10 -0.2 5,161,279 - IAI46_24210 0.10 -0.8 5,161,279 - IAI46_24210 0.10 -0.4 5,161,279 - IAI46_24210 0.10 +0.4 5,161,279 - IAI46_24210 0.10 +0.8 5,161,279 - IAI46_24210 0.10 -0.3 5,161,281 + IAI46_24210 0.10 +0.5 5,161,281 + IAI46_24210 0.10 +0.7 5,161,488 + IAI46_24210 0.20 +0.6 5,161,562 - IAI46_24210 0.24 -0.3 5,161,681 + IAI46_24210 0.30 +0.2 5,161,681 + IAI46_24210 0.30 -0.2 5,161,681 + IAI46_24210 0.30 -0.3 5,161,681 + IAI46_24210 0.30 +0.9 5,161,682 - IAI46_24210 0.30 -0.1 5,161,682 - IAI46_24210 0.30 -2.0 5,161,682 - IAI46_24210 0.30 +0.3 5,161,682 - IAI46_24210 0.30 +1.0 5,161,682 - IAI46_24210 0.30 +1.2 5,161,682 - IAI46_24210 0.30 -1.2 5,161,774 + IAI46_24210 0.34 +1.7 5,161,775 - IAI46_24210 0.35 -1.0 5,161,785 + IAI46_24210 0.35 +0.1 5,161,785 + IAI46_24210 0.35 +0.6 5,161,786 - IAI46_24210 0.35 +0.8 5,161,828 + IAI46_24210 0.37 +0.1 5,161,878 + IAI46_24210 0.40 -0.1 5,161,878 + IAI46_24210 0.40 +0.6 5,161,879 - IAI46_24210 0.40 -0.1 5,161,891 - IAI46_24210 0.40 +1.2 5,161,957 + IAI46_24210 0.43 -0.1 5,161,970 - IAI46_24210 0.44 +0.1 5,161,970 - IAI46_24210 0.44 +0.5 5,161,992 + IAI46_24210 0.45 -1.4 5,161,993 - IAI46_24210 0.45 +0.1 5,162,024 + IAI46_24210 0.47 +0.3 5,162,024 + IAI46_24210 0.47 -2.0 5,162,024 + IAI46_24210 0.47 +0.0 5,162,024 + IAI46_24210 0.47 +0.2 5,162,025 - IAI46_24210 0.47 +1.1 5,162,025 - IAI46_24210 0.47 +0.9 5,162,046 + IAI46_24210 0.48 +0.2 5,162,047 - IAI46_24210 0.48 +0.1 5,162,047 - IAI46_24210 0.48 -0.3
Or see this region's nucleotide sequence