Strain Fitness in Serratia liquefaciens MT49 around IAI46_23725

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23715 and IAI46_23720 overlap by 4 nucleotidesIAI46_23720 and IAI46_23725 overlap by 8 nucleotidesIAI46_23725 and IAI46_23730 overlap by 8 nucleotidesIAI46_23730 and IAI46_23735 are separated by 3 nucleotides IAI46_23715: IAI46_23715 - DNA uptake porin HofQ, at 5,042,973 to 5,044,214 _23715 IAI46_23720: IAI46_23720 - DUF2531 family protein, at 5,044,211 to 5,044,567 _23720 IAI46_23725: IAI46_23725 - hypothetical protein, at 5,044,560 to 5,045,078 _23725 IAI46_23730: IAI46_23730 - PilN domain-containing protein, at 5,045,071 to 5,045,607 _23730 IAI46_23735: IAI46_23735 - pilus assembly protein PilM, at 5,045,611 to 5,046,453 _23735 Position (kb) 5044 5045 5046Strain fitness (log2 ratio) -2 -1 0 1at 5043.639 kb on - strand, within IAI46_23715at 5043.641 kb on + strand, within IAI46_23715at 5043.641 kb on + strand, within IAI46_23715at 5043.642 kb on - strand, within IAI46_23715at 5043.642 kb on - strand, within IAI46_23715at 5043.651 kb on - strand, within IAI46_23715at 5043.660 kb on + strand, within IAI46_23715at 5043.797 kb on + strand, within IAI46_23715at 5043.798 kb on - strand, within IAI46_23715at 5043.870 kb on + strand, within IAI46_23715at 5043.870 kb on + strand, within IAI46_23715at 5043.871 kb on - strand, within IAI46_23715at 5043.871 kb on - strand, within IAI46_23715at 5043.871 kb on - strand, within IAI46_23715at 5043.871 kb on - strand, within IAI46_23715at 5043.965 kb on + strand, within IAI46_23715at 5043.965 kb on + strand, within IAI46_23715at 5043.965 kb on + strand, within IAI46_23715at 5043.965 kb on + strand, within IAI46_23715at 5043.965 kb on + strand, within IAI46_23715at 5043.966 kb on - strand, within IAI46_23715at 5043.966 kb on - strand, within IAI46_23715at 5043.966 kb on - strand, within IAI46_23715at 5043.966 kb on - strand, within IAI46_23715at 5043.966 kb on - strand, within IAI46_23715at 5043.985 kb on - strand, within IAI46_23715at 5044.015 kb on - strand, within IAI46_23715at 5044.020 kb on - strand, within IAI46_23715at 5044.070 kb on + strand, within IAI46_23715at 5044.070 kb on + strand, within IAI46_23715at 5044.070 kb on + strand, within IAI46_23715at 5044.101 kb on + strandat 5044.101 kb on + strandat 5044.101 kb on + strandat 5044.158 kb on + strandat 5044.158 kb on + strandat 5044.158 kb on + strandat 5044.159 kb on - strandat 5044.159 kb on - strandat 5044.159 kb on - strandat 5044.159 kb on - strandat 5044.159 kb on - strandat 5044.225 kb on + strandat 5044.226 kb on - strandat 5044.226 kb on - strandat 5044.252 kb on + strand, within IAI46_23720at 5044.252 kb on + strand, within IAI46_23720at 5044.252 kb on + strand, within IAI46_23720at 5044.252 kb on + strand, within IAI46_23720at 5044.253 kb on - strand, within IAI46_23720at 5044.280 kb on - strand, within IAI46_23720at 5044.295 kb on + strand, within IAI46_23720at 5044.316 kb on + strand, within IAI46_23720at 5044.317 kb on - strand, within IAI46_23720at 5044.390 kb on + strand, within IAI46_23720at 5044.391 kb on - strand, within IAI46_23720at 5044.391 kb on - strand, within IAI46_23720at 5044.391 kb on - strand, within IAI46_23720at 5044.391 kb on - strand, within IAI46_23720at 5044.394 kb on + strand, within IAI46_23720at 5044.394 kb on + strand, within IAI46_23720at 5044.394 kb on + strand, within IAI46_23720at 5044.394 kb on + strand, within IAI46_23720at 5044.567 kb on + strandat 5044.567 kb on + strandat 5044.567 kb on + strandat 5044.568 kb on - strandat 5044.568 kb on - strandat 5044.568 kb on - strandat 5044.692 kb on + strand, within IAI46_23725at 5044.693 kb on - strand, within IAI46_23725at 5044.695 kb on + strand, within IAI46_23725at 5044.695 kb on + strand, within IAI46_23725at 5044.695 kb on + strand, within IAI46_23725at 5044.695 kb on + strand, within IAI46_23725at 5044.696 kb on - strand, within IAI46_23725at 5044.696 kb on - strand, within IAI46_23725at 5044.705 kb on + strand, within IAI46_23725at 5044.788 kb on + strand, within IAI46_23725at 5044.788 kb on + strand, within IAI46_23725at 5044.788 kb on + strand, within IAI46_23725at 5044.788 kb on + strand, within IAI46_23725at 5044.789 kb on - strand, within IAI46_23725at 5044.809 kb on - strand, within IAI46_23725at 5044.826 kb on + strand, within IAI46_23725at 5044.826 kb on + strand, within IAI46_23725at 5044.827 kb on - strand, within IAI46_23725at 5045.072 kb on + strandat 5045.072 kb on + strandat 5045.072 kb on + strandat 5045.072 kb on + strandat 5045.073 kb on - strandat 5045.073 kb on - strandat 5045.073 kb on - strandat 5045.073 kb on - strandat 5045.103 kb on + strandat 5045.104 kb on - strandat 5045.104 kb on - strandat 5045.104 kb on - strandat 5045.176 kb on + strand, within IAI46_23730at 5045.176 kb on + strand, within IAI46_23730at 5045.207 kb on + strand, within IAI46_23730at 5045.208 kb on - strand, within IAI46_23730at 5045.236 kb on - strand, within IAI46_23730at 5045.247 kb on + strand, within IAI46_23730at 5045.248 kb on - strand, within IAI46_23730at 5045.250 kb on + strand, within IAI46_23730at 5045.251 kb on - strand, within IAI46_23730at 5045.251 kb on - strand, within IAI46_23730at 5045.251 kb on - strand, within IAI46_23730at 5045.251 kb on - strand, within IAI46_23730at 5045.365 kb on + strand, within IAI46_23730at 5045.604 kb on - strandat 5045.667 kb on + strandat 5045.667 kb on + strandat 5045.668 kb on - strandat 5045.668 kb on - strandat 5045.694 kb on + strandat 5045.704 kb on - strand, within IAI46_23735at 5045.757 kb on + strand, within IAI46_23735at 5045.760 kb on - strand, within IAI46_23735at 5045.760 kb on - strand, within IAI46_23735at 5045.763 kb on - strand, within IAI46_23735at 5045.763 kb on - strand, within IAI46_23735at 5045.776 kb on - strand, within IAI46_23735at 5045.776 kb on - strand, within IAI46_23735at 5045.868 kb on + strand, within IAI46_23735at 5045.869 kb on - strand, within IAI46_23735at 5045.888 kb on - strand, within IAI46_23735at 5045.973 kb on + strand, within IAI46_23735at 5045.973 kb on + strand, within IAI46_23735at 5045.974 kb on - strand, within IAI46_23735at 5045.974 kb on - strand, within IAI46_23735at 5045.976 kb on + strand, within IAI46_23735at 5045.984 kb on - strand, within IAI46_23735at 5046.008 kb on + strand, within IAI46_23735at 5046.009 kb on - strand, within IAI46_23735

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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5,043,639 - IAI46_23715 0.54 -0.9
5,043,641 + IAI46_23715 0.54 +0.1
5,043,641 + IAI46_23715 0.54 -0.4
5,043,642 - IAI46_23715 0.54 +0.1
5,043,642 - IAI46_23715 0.54 -0.0
5,043,651 - IAI46_23715 0.55 +0.1
5,043,660 + IAI46_23715 0.55 -0.3
5,043,797 + IAI46_23715 0.66 +0.2
5,043,798 - IAI46_23715 0.66 +0.1
5,043,870 + IAI46_23715 0.72 +0.5
5,043,870 + IAI46_23715 0.72 -0.1
5,043,871 - IAI46_23715 0.72 +0.2
5,043,871 - IAI46_23715 0.72 -1.3
5,043,871 - IAI46_23715 0.72 -0.2
5,043,871 - IAI46_23715 0.72 -0.9
5,043,965 + IAI46_23715 0.80 +0.6
5,043,965 + IAI46_23715 0.80 +0.5
5,043,965 + IAI46_23715 0.80 +0.2
5,043,965 + IAI46_23715 0.80 +0.1
5,043,965 + IAI46_23715 0.80 +1.3
5,043,966 - IAI46_23715 0.80 -0.1
5,043,966 - IAI46_23715 0.80 -0.1
5,043,966 - IAI46_23715 0.80 -1.0
5,043,966 - IAI46_23715 0.80 +1.1
5,043,966 - IAI46_23715 0.80 -0.6
5,043,985 - IAI46_23715 0.81 +0.2
5,044,015 - IAI46_23715 0.84 +0.7
5,044,020 - IAI46_23715 0.84 +0.1
5,044,070 + IAI46_23715 0.88 -0.3
5,044,070 + IAI46_23715 0.88 -0.5
5,044,070 + IAI46_23715 0.88 +1.0
5,044,101 + -0.1
5,044,101 + -1.6
5,044,101 + +1.0
5,044,158 + -0.1
5,044,158 + +0.2
5,044,158 + +0.7
5,044,159 - +0.2
5,044,159 - -0.2
5,044,159 - -0.6
5,044,159 - -0.6
5,044,159 - -0.5
5,044,225 + +0.9
5,044,226 - +0.1
5,044,226 - -0.6
5,044,252 + IAI46_23720 0.11 +0.1
5,044,252 + IAI46_23720 0.11 -0.1
5,044,252 + IAI46_23720 0.11 -0.1
5,044,252 + IAI46_23720 0.11 -0.6
5,044,253 - IAI46_23720 0.12 +0.2
5,044,280 - IAI46_23720 0.19 -0.8
5,044,295 + IAI46_23720 0.24 -0.8
5,044,316 + IAI46_23720 0.29 -0.5
5,044,317 - IAI46_23720 0.30 -0.1
5,044,390 + IAI46_23720 0.50 +0.5
5,044,391 - IAI46_23720 0.50 +0.1
5,044,391 - IAI46_23720 0.50 -0.2
5,044,391 - IAI46_23720 0.50 +0.2
5,044,391 - IAI46_23720 0.50 +0.0
5,044,394 + IAI46_23720 0.51 -0.3
5,044,394 + IAI46_23720 0.51 +1.0
5,044,394 + IAI46_23720 0.51 -0.1
5,044,394 + IAI46_23720 0.51 +0.6
5,044,567 + +1.1
5,044,567 + +0.1
5,044,567 + +1.0
5,044,568 - +1.5
5,044,568 - +0.2
5,044,568 - -0.0
5,044,692 + IAI46_23725 0.25 -0.6
5,044,693 - IAI46_23725 0.26 -0.2
5,044,695 + IAI46_23725 0.26 -0.2
5,044,695 + IAI46_23725 0.26 +0.0
5,044,695 + IAI46_23725 0.26 -0.8
5,044,695 + IAI46_23725 0.26 +1.0
5,044,696 - IAI46_23725 0.26 +0.1
5,044,696 - IAI46_23725 0.26 +0.9
5,044,705 + IAI46_23725 0.28 +0.5
5,044,788 + IAI46_23725 0.44 +1.1
5,044,788 + IAI46_23725 0.44 -1.0
5,044,788 + IAI46_23725 0.44 -0.3
5,044,788 + IAI46_23725 0.44 +0.5
5,044,789 - IAI46_23725 0.44 -0.9
5,044,809 - IAI46_23725 0.48 +1.5
5,044,826 + IAI46_23725 0.51 +0.7
5,044,826 + IAI46_23725 0.51 -0.5
5,044,827 - IAI46_23725 0.51 +0.7
5,045,072 + +0.8
5,045,072 + +0.1
5,045,072 + -2.2
5,045,072 + +0.8
5,045,073 - -1.6
5,045,073 - +0.3
5,045,073 - +0.8
5,045,073 - -1.0
5,045,103 + +0.3
5,045,104 - +0.3
5,045,104 - +0.0
5,045,104 - +0.9
5,045,176 + IAI46_23730 0.20 +0.6
5,045,176 + IAI46_23730 0.20 +0.8
5,045,207 + IAI46_23730 0.25 -1.0
5,045,208 - IAI46_23730 0.26 -0.1
5,045,236 - IAI46_23730 0.31 -0.4
5,045,247 + IAI46_23730 0.33 -0.0
5,045,248 - IAI46_23730 0.33 -0.0
5,045,250 + IAI46_23730 0.33 +0.1
5,045,251 - IAI46_23730 0.34 +0.2
5,045,251 - IAI46_23730 0.34 +0.4
5,045,251 - IAI46_23730 0.34 -0.4
5,045,251 - IAI46_23730 0.34 +0.5
5,045,365 + IAI46_23730 0.55 -0.4
5,045,604 - +0.2
5,045,667 + +0.2
5,045,667 + +0.2
5,045,668 - -0.3
5,045,668 - +0.3
5,045,694 + +0.0
5,045,704 - IAI46_23735 0.11 +0.5
5,045,757 + IAI46_23735 0.17 +0.6
5,045,760 - IAI46_23735 0.18 +0.2
5,045,760 - IAI46_23735 0.18 -0.2
5,045,763 - IAI46_23735 0.18 +1.0
5,045,763 - IAI46_23735 0.18 -0.3
5,045,776 - IAI46_23735 0.20 +0.2
5,045,776 - IAI46_23735 0.20 -0.1
5,045,868 + IAI46_23735 0.30 +0.1
5,045,869 - IAI46_23735 0.31 -0.6
5,045,888 - IAI46_23735 0.33 -0.0
5,045,973 + IAI46_23735 0.43 +0.4
5,045,973 + IAI46_23735 0.43 -0.3
5,045,974 - IAI46_23735 0.43 +0.1
5,045,974 - IAI46_23735 0.43 +0.1
5,045,976 + IAI46_23735 0.43 +0.0
5,045,984 - IAI46_23735 0.44 +0.2
5,046,008 + IAI46_23735 0.47 +0.5
5,046,009 - IAI46_23735 0.47 +0.4

Or see this region's nucleotide sequence