Strain Fitness in Serratia liquefaciens MT49 around IAI46_23585

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23580 and IAI46_23585 are separated by 54 nucleotidesIAI46_23585 and IAI46_23590 are separated by 73 nucleotides IAI46_23580: IAI46_23580 - cAMP-activated global transcriptional regulator CRP, at 5,014,463 to 5,015,095 _23580 IAI46_23585: IAI46_23585 - FUSC family protein, at 5,015,150 to 5,017,225 _23585 IAI46_23590: IAI46_23590 - aspartate aminotransferase family protein, at 5,017,299 to 5,018,516 _23590 Position (kb) 5015 5016 5017 5018Strain fitness (log2 ratio) -2 -1 0 1 2at 5014.157 kb on - strandat 5014.157 kb on - strandat 5014.205 kb on - strandat 5014.221 kb on + strandat 5014.294 kb on + strandat 5014.318 kb on + strandat 5014.318 kb on + strandat 5014.318 kb on + strandat 5014.318 kb on + strandat 5014.318 kb on + strandat 5014.319 kb on - strandat 5014.319 kb on - strandat 5014.321 kb on + strandat 5014.321 kb on + strandat 5014.322 kb on - strandat 5014.322 kb on - strandat 5014.322 kb on - strandat 5014.326 kb on + strandat 5014.326 kb on + strandat 5014.339 kb on + strandat 5014.339 kb on + strandat 5014.339 kb on + strandat 5014.339 kb on + strandat 5014.339 kb on + strandat 5014.341 kb on + strandat 5014.341 kb on + strandat 5014.345 kb on + strandat 5014.370 kb on + strandat 5014.370 kb on + strandat 5014.380 kb on + strandat 5014.380 kb on + strandat 5015.135 kb on - strandat 5015.146 kb on + strandat 5015.146 kb on + strandat 5015.146 kb on + strandat 5015.169 kb on - strandat 5015.169 kb on - strandat 5015.186 kb on + strandat 5015.186 kb on + strandat 5015.187 kb on - strandat 5015.187 kb on - strandat 5015.187 kb on - strandat 5015.329 kb on + strandat 5015.559 kb on + strand, within IAI46_23585at 5015.559 kb on + strand, within IAI46_23585at 5015.559 kb on + strand, within IAI46_23585at 5015.560 kb on - strand, within IAI46_23585at 5015.560 kb on - strand, within IAI46_23585at 5015.560 kb on - strand, within IAI46_23585at 5015.560 kb on - strand, within IAI46_23585at 5015.560 kb on - strand, within IAI46_23585at 5015.561 kb on + strand, within IAI46_23585at 5015.561 kb on + strand, within IAI46_23585at 5015.561 kb on + strand, within IAI46_23585at 5015.561 kb on + strand, within IAI46_23585at 5015.561 kb on + strand, within IAI46_23585at 5015.561 kb on + strand, within IAI46_23585at 5015.561 kb on + strand, within IAI46_23585at 5015.561 kb on + strand, within IAI46_23585at 5015.562 kb on - strand, within IAI46_23585at 5015.562 kb on - strand, within IAI46_23585at 5015.562 kb on - strand, within IAI46_23585at 5015.562 kb on - strand, within IAI46_23585at 5015.562 kb on - strand, within IAI46_23585at 5015.562 kb on - strand, within IAI46_23585at 5015.562 kb on - strand, within IAI46_23585at 5015.562 kb on - strand, within IAI46_23585at 5015.563 kb on + strand, within IAI46_23585at 5015.563 kb on + strand, within IAI46_23585at 5015.563 kb on + strand, within IAI46_23585at 5015.563 kb on + strand, within IAI46_23585at 5015.563 kb on + strand, within IAI46_23585at 5015.563 kb on + strand, within IAI46_23585at 5015.563 kb on + strand, within IAI46_23585at 5015.564 kb on - strand, within IAI46_23585at 5015.564 kb on - strand, within IAI46_23585at 5015.564 kb on - strand, within IAI46_23585at 5015.564 kb on - strand, within IAI46_23585at 5015.564 kb on - strand, within IAI46_23585at 5015.564 kb on - strand, within IAI46_23585at 5015.564 kb on - strand, within IAI46_23585at 5015.583 kb on - strand, within IAI46_23585at 5015.655 kb on - strand, within IAI46_23585at 5015.655 kb on - strand, within IAI46_23585at 5015.655 kb on - strand, within IAI46_23585at 5015.672 kb on + strand, within IAI46_23585at 5015.673 kb on - strand, within IAI46_23585at 5015.780 kb on + strand, within IAI46_23585at 5015.780 kb on + strand, within IAI46_23585at 5015.781 kb on - strand, within IAI46_23585at 5015.781 kb on - strand, within IAI46_23585at 5015.792 kb on - strand, within IAI46_23585at 5016.003 kb on - strand, within IAI46_23585at 5016.003 kb on - strand, within IAI46_23585at 5016.003 kb on - strand, within IAI46_23585at 5016.003 kb on - strand, within IAI46_23585at 5016.096 kb on + strand, within IAI46_23585at 5016.101 kb on + strand, within IAI46_23585at 5016.212 kb on + strand, within IAI46_23585at 5016.212 kb on + strand, within IAI46_23585at 5016.212 kb on + strand, within IAI46_23585at 5016.213 kb on - strand, within IAI46_23585at 5016.213 kb on - strand, within IAI46_23585at 5016.241 kb on + strand, within IAI46_23585at 5016.241 kb on + strand, within IAI46_23585at 5016.294 kb on + strand, within IAI46_23585at 5016.295 kb on - strand, within IAI46_23585at 5016.295 kb on - strand, within IAI46_23585at 5016.295 kb on - strand, within IAI46_23585at 5016.295 kb on - strand, within IAI46_23585at 5016.315 kb on - strand, within IAI46_23585at 5016.356 kb on + strand, within IAI46_23585at 5016.430 kb on - strand, within IAI46_23585at 5016.495 kb on - strand, within IAI46_23585at 5016.495 kb on - strand, within IAI46_23585at 5016.508 kb on + strand, within IAI46_23585at 5016.539 kb on - strand, within IAI46_23585at 5016.555 kb on - strand, within IAI46_23585at 5016.555 kb on - strand, within IAI46_23585at 5016.631 kb on - strand, within IAI46_23585at 5016.776 kb on + strand, within IAI46_23585at 5016.805 kb on + strand, within IAI46_23585at 5016.806 kb on - strand, within IAI46_23585at 5016.806 kb on - strand, within IAI46_23585at 5016.874 kb on + strand, within IAI46_23585at 5016.874 kb on + strand, within IAI46_23585at 5016.874 kb on + strand, within IAI46_23585at 5016.874 kb on + strand, within IAI46_23585at 5016.875 kb on - strand, within IAI46_23585at 5016.875 kb on - strand, within IAI46_23585at 5016.875 kb on - strand, within IAI46_23585at 5016.875 kb on - strand, within IAI46_23585at 5016.875 kb on - strand, within IAI46_23585at 5016.875 kb on - strand, within IAI46_23585at 5016.889 kb on + strand, within IAI46_23585at 5016.950 kb on + strand, within IAI46_23585at 5016.950 kb on + strand, within IAI46_23585at 5016.950 kb on + strand, within IAI46_23585at 5016.950 kb on + strand, within IAI46_23585at 5016.950 kb on + strand, within IAI46_23585at 5016.950 kb on + strand, within IAI46_23585at 5016.951 kb on - strand, within IAI46_23585at 5016.951 kb on - strand, within IAI46_23585at 5016.952 kb on + strand, within IAI46_23585at 5016.952 kb on + strand, within IAI46_23585at 5016.952 kb on + strand, within IAI46_23585at 5016.952 kb on + strand, within IAI46_23585at 5016.952 kb on + strand, within IAI46_23585at 5016.952 kb on + strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.953 kb on - strand, within IAI46_23585at 5016.980 kb on + strand, within IAI46_23585at 5016.980 kb on + strand, within IAI46_23585at 5017.031 kb on + strandat 5017.060 kb on + strandat 5017.060 kb on + strandat 5017.060 kb on + strandat 5017.061 kb on - strandat 5017.192 kb on + strandat 5017.193 kb on - strandat 5017.193 kb on - strandat 5017.223 kb on + strandat 5017.223 kb on + strandat 5017.265 kb on + strandat 5017.266 kb on - strandat 5017.266 kb on - strandat 5017.269 kb on - strandat 5017.293 kb on + strandat 5017.293 kb on + strandat 5017.356 kb on - strandat 5017.369 kb on - strandat 5017.568 kb on - strand, within IAI46_23590at 5017.666 kb on + strand, within IAI46_23590at 5017.666 kb on + strand, within IAI46_23590at 5017.789 kb on + strand, within IAI46_23590at 5017.789 kb on + strand, within IAI46_23590at 5017.789 kb on + strand, within IAI46_23590at 5017.790 kb on - strand, within IAI46_23590at 5017.790 kb on - strand, within IAI46_23590at 5017.796 kb on + strand, within IAI46_23590at 5017.796 kb on + strand, within IAI46_23590at 5017.796 kb on + strand, within IAI46_23590at 5017.796 kb on + strand, within IAI46_23590at 5017.797 kb on - strand, within IAI46_23590at 5017.797 kb on - strand, within IAI46_23590at 5017.797 kb on - strand, within IAI46_23590at 5017.798 kb on + strand, within IAI46_23590at 5017.798 kb on + strand, within IAI46_23590at 5017.798 kb on + strand, within IAI46_23590at 5017.798 kb on + strand, within IAI46_23590at 5017.799 kb on - strand, within IAI46_23590at 5017.799 kb on - strand, within IAI46_23590at 5017.799 kb on - strand, within IAI46_23590at 5017.799 kb on - strand, within IAI46_23590at 5017.848 kb on + strand, within IAI46_23590at 5017.884 kb on + strand, within IAI46_23590at 5017.884 kb on + strand, within IAI46_23590at 5017.884 kb on + strand, within IAI46_23590at 5017.948 kb on - strand, within IAI46_23590at 5017.961 kb on + strand, within IAI46_23590at 5017.961 kb on + strand, within IAI46_23590at 5017.962 kb on - strand, within IAI46_23590at 5017.962 kb on - strand, within IAI46_23590at 5018.013 kb on + strand, within IAI46_23590at 5018.013 kb on + strand, within IAI46_23590at 5018.014 kb on - strand, within IAI46_23590at 5018.014 kb on - strand, within IAI46_23590at 5018.014 kb on - strand, within IAI46_23590at 5018.107 kb on + strand, within IAI46_23590at 5018.107 kb on + strand, within IAI46_23590at 5018.108 kb on - strand, within IAI46_23590at 5018.108 kb on - strand, within IAI46_23590at 5018.131 kb on + strand, within IAI46_23590

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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5,014,157 - -0.1
5,014,157 - +0.5
5,014,205 - +0.6
5,014,221 + -0.2
5,014,294 + +0.7
5,014,318 + -0.2
5,014,318 + -0.2
5,014,318 + -0.0
5,014,318 + -1.3
5,014,318 + +0.9
5,014,319 - +0.3
5,014,319 - +0.6
5,014,321 + +0.4
5,014,321 + +0.9
5,014,322 - +0.7
5,014,322 - +0.2
5,014,322 - -1.3
5,014,326 + -0.0
5,014,326 + +1.2
5,014,339 + -0.8
5,014,339 + +0.9
5,014,339 + +2.0
5,014,339 + +0.2
5,014,339 + +0.5
5,014,341 + +0.0
5,014,341 + +0.0
5,014,345 + -0.3
5,014,370 + +1.9
5,014,370 + +0.6
5,014,380 + +0.6
5,014,380 + +0.9
5,015,135 - -0.2
5,015,146 + -1.8
5,015,146 + -0.9
5,015,146 + -0.0
5,015,169 - -0.8
5,015,169 - -1.1
5,015,186 + +2.7
5,015,186 + +0.0
5,015,187 - +0.3
5,015,187 - +0.5
5,015,187 - +0.2
5,015,329 + +0.4
5,015,559 + IAI46_23585 0.20 +1.1
5,015,559 + IAI46_23585 0.20 -0.1
5,015,559 + IAI46_23585 0.20 +0.6
5,015,560 - IAI46_23585 0.20 -0.5
5,015,560 - IAI46_23585 0.20 +0.2
5,015,560 - IAI46_23585 0.20 -0.1
5,015,560 - IAI46_23585 0.20 -0.2
5,015,560 - IAI46_23585 0.20 +0.5
5,015,561 + IAI46_23585 0.20 +1.3
5,015,561 + IAI46_23585 0.20 +1.2
5,015,561 + IAI46_23585 0.20 +0.9
5,015,561 + IAI46_23585 0.20 -0.0
5,015,561 + IAI46_23585 0.20 -0.1
5,015,561 + IAI46_23585 0.20 -0.4
5,015,561 + IAI46_23585 0.20 +0.0
5,015,561 + IAI46_23585 0.20 +0.6
5,015,562 - IAI46_23585 0.20 -0.4
5,015,562 - IAI46_23585 0.20 -0.3
5,015,562 - IAI46_23585 0.20 +0.9
5,015,562 - IAI46_23585 0.20 +0.2
5,015,562 - IAI46_23585 0.20 -0.5
5,015,562 - IAI46_23585 0.20 -1.1
5,015,562 - IAI46_23585 0.20 +1.0
5,015,562 - IAI46_23585 0.20 +0.5
5,015,563 + IAI46_23585 0.20 +0.2
5,015,563 + IAI46_23585 0.20 -0.2
5,015,563 + IAI46_23585 0.20 +1.0
5,015,563 + IAI46_23585 0.20 +1.4
5,015,563 + IAI46_23585 0.20 -0.3
5,015,563 + IAI46_23585 0.20 -0.5
5,015,563 + IAI46_23585 0.20 -2.3
5,015,564 - IAI46_23585 0.20 -0.5
5,015,564 - IAI46_23585 0.20 +0.0
5,015,564 - IAI46_23585 0.20 +0.9
5,015,564 - IAI46_23585 0.20 +0.4
5,015,564 - IAI46_23585 0.20 +0.7
5,015,564 - IAI46_23585 0.20 +0.8
5,015,564 - IAI46_23585 0.20 +0.3
5,015,583 - IAI46_23585 0.21 +0.1
5,015,655 - IAI46_23585 0.24 +0.5
5,015,655 - IAI46_23585 0.24 +0.0
5,015,655 - IAI46_23585 0.24 +0.3
5,015,672 + IAI46_23585 0.25 +0.2
5,015,673 - IAI46_23585 0.25 -0.5
5,015,780 + IAI46_23585 0.30 -0.6
5,015,780 + IAI46_23585 0.30 +0.6
5,015,781 - IAI46_23585 0.30 -1.4
5,015,781 - IAI46_23585 0.30 -0.6
5,015,792 - IAI46_23585 0.31 -0.3
5,016,003 - IAI46_23585 0.41 +0.4
5,016,003 - IAI46_23585 0.41 +0.5
5,016,003 - IAI46_23585 0.41 +0.4
5,016,003 - IAI46_23585 0.41 -0.1
5,016,096 + IAI46_23585 0.46 +0.6
5,016,101 + IAI46_23585 0.46 +0.9
5,016,212 + IAI46_23585 0.51 +0.4
5,016,212 + IAI46_23585 0.51 -0.1
5,016,212 + IAI46_23585 0.51 -0.7
5,016,213 - IAI46_23585 0.51 +0.6
5,016,213 - IAI46_23585 0.51 +0.2
5,016,241 + IAI46_23585 0.53 +0.6
5,016,241 + IAI46_23585 0.53 -0.1
5,016,294 + IAI46_23585 0.55 +0.0
5,016,295 - IAI46_23585 0.55 +0.0
5,016,295 - IAI46_23585 0.55 +0.5
5,016,295 - IAI46_23585 0.55 +1.0
5,016,295 - IAI46_23585 0.55 -0.1
5,016,315 - IAI46_23585 0.56 +0.0
5,016,356 + IAI46_23585 0.58 -1.1
5,016,430 - IAI46_23585 0.62 +0.6
5,016,495 - IAI46_23585 0.65 +0.7
5,016,495 - IAI46_23585 0.65 +0.0
5,016,508 + IAI46_23585 0.65 +0.3
5,016,539 - IAI46_23585 0.67 +0.1
5,016,555 - IAI46_23585 0.68 -0.3
5,016,555 - IAI46_23585 0.68 +0.3
5,016,631 - IAI46_23585 0.71 -0.0
5,016,776 + IAI46_23585 0.78 +0.5
5,016,805 + IAI46_23585 0.80 -0.5
5,016,806 - IAI46_23585 0.80 +0.2
5,016,806 - IAI46_23585 0.80 +0.8
5,016,874 + IAI46_23585 0.83 -0.3
5,016,874 + IAI46_23585 0.83 -0.1
5,016,874 + IAI46_23585 0.83 +0.0
5,016,874 + IAI46_23585 0.83 +0.1
5,016,875 - IAI46_23585 0.83 +0.4
5,016,875 - IAI46_23585 0.83 +0.7
5,016,875 - IAI46_23585 0.83 -0.0
5,016,875 - IAI46_23585 0.83 -0.5
5,016,875 - IAI46_23585 0.83 +0.3
5,016,875 - IAI46_23585 0.83 -2.4
5,016,889 + IAI46_23585 0.84 +0.2
5,016,950 + IAI46_23585 0.87 -0.5
5,016,950 + IAI46_23585 0.87 -0.7
5,016,950 + IAI46_23585 0.87 -0.3
5,016,950 + IAI46_23585 0.87 +0.6
5,016,950 + IAI46_23585 0.87 -0.2
5,016,950 + IAI46_23585 0.87 +1.0
5,016,951 - IAI46_23585 0.87 -0.4
5,016,951 - IAI46_23585 0.87 -0.0
5,016,952 + IAI46_23585 0.87 -0.2
5,016,952 + IAI46_23585 0.87 -0.7
5,016,952 + IAI46_23585 0.87 -0.3
5,016,952 + IAI46_23585 0.87 +0.7
5,016,952 + IAI46_23585 0.87 +0.1
5,016,952 + IAI46_23585 0.87 -1.1
5,016,953 - IAI46_23585 0.87 +0.3
5,016,953 - IAI46_23585 0.87 +0.3
5,016,953 - IAI46_23585 0.87 -1.6
5,016,953 - IAI46_23585 0.87 -0.3
5,016,953 - IAI46_23585 0.87 +0.2
5,016,953 - IAI46_23585 0.87 -0.4
5,016,953 - IAI46_23585 0.87 -0.3
5,016,953 - IAI46_23585 0.87 -0.1
5,016,953 - IAI46_23585 0.87 -0.5
5,016,953 - IAI46_23585 0.87 +0.6
5,016,953 - IAI46_23585 0.87 +0.2
5,016,953 - IAI46_23585 0.87 +0.1
5,016,953 - IAI46_23585 0.87 -0.3
5,016,980 + IAI46_23585 0.88 -0.2
5,016,980 + IAI46_23585 0.88 +0.4
5,017,031 + -1.0
5,017,060 + +0.9
5,017,060 + +0.4
5,017,060 + +0.8
5,017,061 - +1.7
5,017,192 + +0.4
5,017,193 - +1.2
5,017,193 - -0.3
5,017,223 + -1.6
5,017,223 + -0.2
5,017,265 + +0.7
5,017,266 - +0.4
5,017,266 - +1.7
5,017,269 - -0.3
5,017,293 + +0.6
5,017,293 + +0.5
5,017,356 - -0.2
5,017,369 - -0.1
5,017,568 - IAI46_23590 0.22 +0.0
5,017,666 + IAI46_23590 0.30 -0.3
5,017,666 + IAI46_23590 0.30 +0.0
5,017,789 + IAI46_23590 0.40 +0.9
5,017,789 + IAI46_23590 0.40 +1.0
5,017,789 + IAI46_23590 0.40 +1.4
5,017,790 - IAI46_23590 0.40 +1.2
5,017,790 - IAI46_23590 0.40 -0.0
5,017,796 + IAI46_23590 0.41 +0.6
5,017,796 + IAI46_23590 0.41 -0.3
5,017,796 + IAI46_23590 0.41 +0.2
5,017,796 + IAI46_23590 0.41 +0.5
5,017,797 - IAI46_23590 0.41 +0.0
5,017,797 - IAI46_23590 0.41 +2.1
5,017,797 - IAI46_23590 0.41 -0.6
5,017,798 + IAI46_23590 0.41 +0.3
5,017,798 + IAI46_23590 0.41 +0.2
5,017,798 + IAI46_23590 0.41 +0.3
5,017,798 + IAI46_23590 0.41 +0.2
5,017,799 - IAI46_23590 0.41 -1.2
5,017,799 - IAI46_23590 0.41 +0.7
5,017,799 - IAI46_23590 0.41 -0.2
5,017,799 - IAI46_23590 0.41 -0.5
5,017,848 + IAI46_23590 0.45 +0.9
5,017,884 + IAI46_23590 0.48 +0.2
5,017,884 + IAI46_23590 0.48 +0.7
5,017,884 + IAI46_23590 0.48 -0.4
5,017,948 - IAI46_23590 0.53 -1.1
5,017,961 + IAI46_23590 0.54 -0.8
5,017,961 + IAI46_23590 0.54 +1.5
5,017,962 - IAI46_23590 0.54 +0.7
5,017,962 - IAI46_23590 0.54 +1.1
5,018,013 + IAI46_23590 0.59 +0.6
5,018,013 + IAI46_23590 0.59 +0.4
5,018,014 - IAI46_23590 0.59 -0.2
5,018,014 - IAI46_23590 0.59 +2.2
5,018,014 - IAI46_23590 0.59 +0.7
5,018,107 + IAI46_23590 0.66 +0.9
5,018,107 + IAI46_23590 0.66 -0.1
5,018,108 - IAI46_23590 0.66 -0.3
5,018,108 - IAI46_23590 0.66 +0.0
5,018,131 + IAI46_23590 0.68 -1.8

Or see this region's nucleotide sequence