Strain Fitness in Serratia liquefaciens MT49 around IAI46_21025

Experiment: copper (II) chloride 15 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_21020 and IAI46_21025 are separated by 79 nucleotidesIAI46_21025 and IAI46_21030 are separated by 2 nucleotides IAI46_21020: IAI46_21020 - LysR family transcriptional regulator, at 4,449,310 to 4,450,269 _21020 IAI46_21025: IAI46_21025 - tartrate dehydrogenase, at 4,450,349 to 4,451,428 _21025 IAI46_21030: IAI46_21030 - ABC transporter ATP-binding protein, at 4,451,431 to 4,452,501 _21030 Position (kb) 4450 4451 4452Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4449.354 kb on - strandat 4449.368 kb on + strandat 4449.369 kb on - strandat 4449.456 kb on - strand, within IAI46_21020at 4449.456 kb on - strand, within IAI46_21020at 4449.456 kb on - strand, within IAI46_21020at 4449.456 kb on - strand, within IAI46_21020at 4449.456 kb on - strand, within IAI46_21020at 4449.458 kb on + strand, within IAI46_21020at 4449.459 kb on - strand, within IAI46_21020at 4449.459 kb on - strand, within IAI46_21020at 4449.459 kb on - strand, within IAI46_21020at 4449.459 kb on - strand, within IAI46_21020at 4449.496 kb on - strand, within IAI46_21020at 4449.506 kb on - strand, within IAI46_21020at 4449.663 kb on + strand, within IAI46_21020at 4449.663 kb on + strand, within IAI46_21020at 4449.728 kb on + strand, within IAI46_21020at 4449.729 kb on - strand, within IAI46_21020at 4449.729 kb on - strand, within IAI46_21020at 4449.955 kb on - strand, within IAI46_21020at 4449.955 kb on - strand, within IAI46_21020at 4449.963 kb on + strand, within IAI46_21020at 4449.963 kb on + strand, within IAI46_21020at 4449.979 kb on - strand, within IAI46_21020at 4450.044 kb on - strand, within IAI46_21020at 4450.044 kb on - strand, within IAI46_21020at 4450.083 kb on + strand, within IAI46_21020at 4450.086 kb on + strand, within IAI46_21020at 4450.087 kb on - strand, within IAI46_21020at 4450.087 kb on - strand, within IAI46_21020at 4450.087 kb on - strand, within IAI46_21020at 4450.131 kb on + strand, within IAI46_21020at 4450.131 kb on + strand, within IAI46_21020at 4450.131 kb on + strand, within IAI46_21020at 4450.237 kb on + strandat 4450.243 kb on - strandat 4450.302 kb on - strandat 4450.348 kb on + strandat 4450.348 kb on + strandat 4450.348 kb on + strandat 4450.349 kb on - strandat 4450.349 kb on - strandat 4450.497 kb on - strand, within IAI46_21025at 4450.499 kb on + strand, within IAI46_21025at 4450.499 kb on + strand, within IAI46_21025at 4450.500 kb on - strand, within IAI46_21025at 4450.545 kb on + strand, within IAI46_21025at 4450.545 kb on + strand, within IAI46_21025at 4450.545 kb on + strand, within IAI46_21025at 4450.546 kb on - strand, within IAI46_21025at 4450.546 kb on - strand, within IAI46_21025at 4450.566 kb on - strand, within IAI46_21025at 4450.566 kb on - strand, within IAI46_21025at 4450.606 kb on + strand, within IAI46_21025at 4450.606 kb on + strand, within IAI46_21025at 4450.655 kb on + strand, within IAI46_21025at 4450.656 kb on - strand, within IAI46_21025at 4450.711 kb on + strand, within IAI46_21025at 4450.711 kb on + strand, within IAI46_21025at 4450.711 kb on + strand, within IAI46_21025at 4450.711 kb on + strand, within IAI46_21025at 4450.712 kb on - strand, within IAI46_21025at 4450.712 kb on - strand, within IAI46_21025at 4450.766 kb on + strand, within IAI46_21025at 4450.766 kb on + strand, within IAI46_21025at 4450.766 kb on + strand, within IAI46_21025at 4450.767 kb on - strand, within IAI46_21025at 4450.865 kb on + strand, within IAI46_21025at 4450.865 kb on + strand, within IAI46_21025at 4450.949 kb on + strand, within IAI46_21025at 4451.014 kb on + strand, within IAI46_21025at 4451.014 kb on + strand, within IAI46_21025at 4451.014 kb on + strand, within IAI46_21025at 4451.015 kb on - strand, within IAI46_21025at 4451.015 kb on - strand, within IAI46_21025at 4451.016 kb on + strand, within IAI46_21025at 4451.021 kb on - strand, within IAI46_21025at 4451.021 kb on - strand, within IAI46_21025at 4451.021 kb on - strand, within IAI46_21025at 4451.024 kb on - strand, within IAI46_21025at 4451.284 kb on + strand, within IAI46_21025at 4451.321 kb on - strandat 4451.362 kb on + strandat 4451.510 kb on + strandat 4451.510 kb on + strandat 4451.553 kb on - strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.574 kb on - strand, within IAI46_21030at 4451.574 kb on - strand, within IAI46_21030at 4451.574 kb on - strand, within IAI46_21030at 4451.574 kb on - strand, within IAI46_21030at 4451.772 kb on + strand, within IAI46_21030at 4451.772 kb on + strand, within IAI46_21030at 4451.819 kb on + strand, within IAI46_21030at 4451.819 kb on + strand, within IAI46_21030at 4451.820 kb on - strand, within IAI46_21030at 4451.820 kb on - strand, within IAI46_21030at 4451.820 kb on - strand, within IAI46_21030at 4452.002 kb on - strand, within IAI46_21030at 4452.035 kb on + strand, within IAI46_21030at 4452.035 kb on + strand, within IAI46_21030at 4452.035 kb on + strand, within IAI46_21030at 4452.036 kb on - strand, within IAI46_21030at 4452.179 kb on - strand, within IAI46_21030at 4452.233 kb on + strand, within IAI46_21030at 4452.233 kb on + strand, within IAI46_21030at 4452.234 kb on - strand, within IAI46_21030at 4452.234 kb on - strand, within IAI46_21030at 4452.234 kb on - strand, within IAI46_21030at 4452.244 kb on + strand, within IAI46_21030at 4452.245 kb on - strand, within IAI46_21030at 4452.299 kb on + strand, within IAI46_21030at 4452.299 kb on + strand, within IAI46_21030at 4452.299 kb on + strand, within IAI46_21030at 4452.299 kb on + strand, within IAI46_21030at 4452.299 kb on + strand, within IAI46_21030at 4452.300 kb on - strand, within IAI46_21030at 4452.306 kb on + strand, within IAI46_21030at 4452.307 kb on - strand, within IAI46_21030at 4452.307 kb on - strand, within IAI46_21030at 4452.321 kb on + strand, within IAI46_21030at 4452.322 kb on - strand, within IAI46_21030at 4452.424 kb on + strandat 4452.424 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
remove
4,449,354 - -0.3
4,449,368 + -0.9
4,449,369 - +1.4
4,449,456 - IAI46_21020 0.15 +0.9
4,449,456 - IAI46_21020 0.15 +0.8
4,449,456 - IAI46_21020 0.15 +0.1
4,449,456 - IAI46_21020 0.15 +0.2
4,449,456 - IAI46_21020 0.15 +0.1
4,449,458 + IAI46_21020 0.15 +0.1
4,449,459 - IAI46_21020 0.16 -0.5
4,449,459 - IAI46_21020 0.16 -0.1
4,449,459 - IAI46_21020 0.16 +0.2
4,449,459 - IAI46_21020 0.16 +0.6
4,449,496 - IAI46_21020 0.19 -0.6
4,449,506 - IAI46_21020 0.20 -1.7
4,449,663 + IAI46_21020 0.37 +1.3
4,449,663 + IAI46_21020 0.37 -0.6
4,449,728 + IAI46_21020 0.44 -0.3
4,449,729 - IAI46_21020 0.44 -0.7
4,449,729 - IAI46_21020 0.44 -0.6
4,449,955 - IAI46_21020 0.67 -0.1
4,449,955 - IAI46_21020 0.67 +0.7
4,449,963 + IAI46_21020 0.68 +3.6
4,449,963 + IAI46_21020 0.68 +1.3
4,449,979 - IAI46_21020 0.70 +0.3
4,450,044 - IAI46_21020 0.76 +0.1
4,450,044 - IAI46_21020 0.76 -0.1
4,450,083 + IAI46_21020 0.81 +0.4
4,450,086 + IAI46_21020 0.81 +1.0
4,450,087 - IAI46_21020 0.81 +1.6
4,450,087 - IAI46_21020 0.81 -0.3
4,450,087 - IAI46_21020 0.81 +0.4
4,450,131 + IAI46_21020 0.86 +0.5
4,450,131 + IAI46_21020 0.86 +0.6
4,450,131 + IAI46_21020 0.86 +0.1
4,450,237 + +0.2
4,450,243 - +1.3
4,450,302 - +0.4
4,450,348 + -0.5
4,450,348 + +0.3
4,450,348 + -0.4
4,450,349 - -0.6
4,450,349 - +1.1
4,450,497 - IAI46_21025 0.14 +0.1
4,450,499 + IAI46_21025 0.14 +0.4
4,450,499 + IAI46_21025 0.14 +0.5
4,450,500 - IAI46_21025 0.14 -0.5
4,450,545 + IAI46_21025 0.18 -0.2
4,450,545 + IAI46_21025 0.18 -0.2
4,450,545 + IAI46_21025 0.18 -0.4
4,450,546 - IAI46_21025 0.18 +0.5
4,450,546 - IAI46_21025 0.18 -0.3
4,450,566 - IAI46_21025 0.20 +0.0
4,450,566 - IAI46_21025 0.20 +1.7
4,450,606 + IAI46_21025 0.24 +0.0
4,450,606 + IAI46_21025 0.24 -0.2
4,450,655 + IAI46_21025 0.28 +0.3
4,450,656 - IAI46_21025 0.28 -0.7
4,450,711 + IAI46_21025 0.34 +0.7
4,450,711 + IAI46_21025 0.34 +0.1
4,450,711 + IAI46_21025 0.34 +0.6
4,450,711 + IAI46_21025 0.34 -0.7
4,450,712 - IAI46_21025 0.34 -0.3
4,450,712 - IAI46_21025 0.34 -0.4
4,450,766 + IAI46_21025 0.39 -1.1
4,450,766 + IAI46_21025 0.39 -0.1
4,450,766 + IAI46_21025 0.39 -1.1
4,450,767 - IAI46_21025 0.39 +1.1
4,450,865 + IAI46_21025 0.48 -0.2
4,450,865 + IAI46_21025 0.48 +0.1
4,450,949 + IAI46_21025 0.56 +0.3
4,451,014 + IAI46_21025 0.62 +2.4
4,451,014 + IAI46_21025 0.62 +0.3
4,451,014 + IAI46_21025 0.62 +0.3
4,451,015 - IAI46_21025 0.62 +0.2
4,451,015 - IAI46_21025 0.62 -0.5
4,451,016 + IAI46_21025 0.62 +1.2
4,451,021 - IAI46_21025 0.62 +0.9
4,451,021 - IAI46_21025 0.62 +0.5
4,451,021 - IAI46_21025 0.62 -0.1
4,451,024 - IAI46_21025 0.62 -0.2
4,451,284 + IAI46_21025 0.87 +0.5
4,451,321 - +0.2
4,451,362 + +0.3
4,451,510 + -0.3
4,451,510 + +0.0
4,451,553 - IAI46_21030 0.11 +0.4
4,451,573 + IAI46_21030 0.13 -1.1
4,451,573 + IAI46_21030 0.13 +0.6
4,451,573 + IAI46_21030 0.13 -0.9
4,451,573 + IAI46_21030 0.13 -0.7
4,451,573 + IAI46_21030 0.13 +0.6
4,451,573 + IAI46_21030 0.13 +0.5
4,451,574 - IAI46_21030 0.13 +0.6
4,451,574 - IAI46_21030 0.13 -0.4
4,451,574 - IAI46_21030 0.13 +0.5
4,451,574 - IAI46_21030 0.13 -0.6
4,451,772 + IAI46_21030 0.32 +0.5
4,451,772 + IAI46_21030 0.32 -1.5
4,451,819 + IAI46_21030 0.36 -0.1
4,451,819 + IAI46_21030 0.36 +0.4
4,451,820 - IAI46_21030 0.36 +2.3
4,451,820 - IAI46_21030 0.36 +0.0
4,451,820 - IAI46_21030 0.36 +0.4
4,452,002 - IAI46_21030 0.53 +0.1
4,452,035 + IAI46_21030 0.56 -1.8
4,452,035 + IAI46_21030 0.56 +1.6
4,452,035 + IAI46_21030 0.56 +1.2
4,452,036 - IAI46_21030 0.56 +0.0
4,452,179 - IAI46_21030 0.70 -0.1
4,452,233 + IAI46_21030 0.75 +0.2
4,452,233 + IAI46_21030 0.75 +1.0
4,452,234 - IAI46_21030 0.75 -0.3
4,452,234 - IAI46_21030 0.75 +0.2
4,452,234 - IAI46_21030 0.75 +0.0
4,452,244 + IAI46_21030 0.76 -1.2
4,452,245 - IAI46_21030 0.76 +0.1
4,452,299 + IAI46_21030 0.81 -0.0
4,452,299 + IAI46_21030 0.81 +0.2
4,452,299 + IAI46_21030 0.81 -0.7
4,452,299 + IAI46_21030 0.81 +0.5
4,452,299 + IAI46_21030 0.81 -0.1
4,452,300 - IAI46_21030 0.81 -0.0
4,452,306 + IAI46_21030 0.82 +0.2
4,452,307 - IAI46_21030 0.82 +0.2
4,452,307 - IAI46_21030 0.82 -0.4
4,452,321 + IAI46_21030 0.83 +2.7
4,452,322 - IAI46_21030 0.83 +0.0
4,452,424 + +0.5
4,452,424 + -0.5

Or see this region's nucleotide sequence