Strain Fitness in Serratia liquefaciens MT49 around IAI46_19955

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19950 and IAI46_19955 overlap by 8 nucleotidesIAI46_19955 and IAI46_19960 are separated by 63 nucleotides IAI46_19950: IAI46_19950 - glycine betaine/L-proline ABC transporter ATP-binding protein ProV, at 4,206,891 to 4,208,093 _19950 IAI46_19955: IAI46_19955 - glycine betaine/L-proline ABC transporter permease ProW, at 4,208,086 to 4,209,204 _19955 IAI46_19960: IAI46_19960 - glycine betaine/L-proline ABC transporter substrate-binding protein ProX, at 4,209,268 to 4,210,263 _19960 Position (kb) 4208 4209 4210Strain fitness (log2 ratio) -2 -1 0 1 2at 4207.123 kb on + strand, within IAI46_19950at 4207.123 kb on + strand, within IAI46_19950at 4207.124 kb on - strand, within IAI46_19950at 4207.163 kb on + strand, within IAI46_19950at 4207.165 kb on + strand, within IAI46_19950at 4207.165 kb on + strand, within IAI46_19950at 4207.166 kb on - strand, within IAI46_19950at 4207.166 kb on - strand, within IAI46_19950at 4207.169 kb on + strand, within IAI46_19950at 4207.258 kb on + strand, within IAI46_19950at 4207.259 kb on - strand, within IAI46_19950at 4207.265 kb on + strand, within IAI46_19950at 4207.336 kb on + strand, within IAI46_19950at 4207.336 kb on + strand, within IAI46_19950at 4207.337 kb on - strand, within IAI46_19950at 4207.359 kb on + strand, within IAI46_19950at 4207.365 kb on + strand, within IAI46_19950at 4207.366 kb on - strand, within IAI46_19950at 4207.366 kb on - strand, within IAI46_19950at 4207.414 kb on + strand, within IAI46_19950at 4207.444 kb on + strand, within IAI46_19950at 4207.448 kb on - strand, within IAI46_19950at 4207.448 kb on - strand, within IAI46_19950at 4207.484 kb on - strand, within IAI46_19950at 4207.592 kb on + strand, within IAI46_19950at 4207.620 kb on - strand, within IAI46_19950at 4207.668 kb on + strand, within IAI46_19950at 4207.669 kb on - strand, within IAI46_19950at 4207.725 kb on - strand, within IAI46_19950at 4207.789 kb on + strand, within IAI46_19950at 4207.789 kb on + strand, within IAI46_19950at 4207.789 kb on + strand, within IAI46_19950at 4207.824 kb on + strand, within IAI46_19950at 4207.825 kb on - strand, within IAI46_19950at 4207.830 kb on - strand, within IAI46_19950at 4207.867 kb on + strand, within IAI46_19950at 4208.022 kb on - strandat 4208.022 kb on - strandat 4208.022 kb on - strandat 4208.025 kb on + strandat 4208.026 kb on - strandat 4208.026 kb on - strandat 4208.026 kb on - strandat 4208.037 kb on - strandat 4208.065 kb on + strandat 4208.066 kb on - strandat 4208.069 kb on + strandat 4208.070 kb on - strandat 4208.256 kb on + strand, within IAI46_19955at 4208.257 kb on - strand, within IAI46_19955at 4208.409 kb on + strand, within IAI46_19955at 4208.505 kb on + strand, within IAI46_19955at 4208.505 kb on + strand, within IAI46_19955at 4208.506 kb on - strand, within IAI46_19955at 4208.716 kb on + strand, within IAI46_19955at 4208.716 kb on + strand, within IAI46_19955at 4208.779 kb on - strand, within IAI46_19955at 4208.925 kb on + strand, within IAI46_19955at 4209.015 kb on - strand, within IAI46_19955at 4209.015 kb on - strand, within IAI46_19955at 4209.015 kb on - strand, within IAI46_19955at 4209.151 kb on + strandat 4209.174 kb on - strandat 4209.247 kb on + strandat 4209.248 kb on - strandat 4209.267 kb on + strandat 4209.267 kb on + strandat 4209.267 kb on + strandat 4209.311 kb on + strandat 4209.312 kb on - strandat 4209.466 kb on + strand, within IAI46_19960at 4209.467 kb on - strand, within IAI46_19960at 4209.472 kb on - strand, within IAI46_19960at 4209.478 kb on + strand, within IAI46_19960at 4209.478 kb on + strand, within IAI46_19960at 4209.479 kb on - strand, within IAI46_19960at 4209.481 kb on - strand, within IAI46_19960at 4209.481 kb on - strand, within IAI46_19960at 4209.481 kb on - strand, within IAI46_19960at 4209.481 kb on - strand, within IAI46_19960at 4209.481 kb on - strand, within IAI46_19960at 4209.508 kb on + strand, within IAI46_19960at 4209.508 kb on + strand, within IAI46_19960at 4209.508 kb on + strand, within IAI46_19960at 4209.509 kb on - strand, within IAI46_19960at 4209.509 kb on - strand, within IAI46_19960at 4209.509 kb on - strand, within IAI46_19960at 4209.509 kb on - strand, within IAI46_19960at 4209.547 kb on + strand, within IAI46_19960at 4209.547 kb on + strand, within IAI46_19960at 4209.548 kb on - strand, within IAI46_19960at 4209.578 kb on - strand, within IAI46_19960at 4209.578 kb on - strand, within IAI46_19960at 4209.592 kb on + strand, within IAI46_19960at 4209.592 kb on + strand, within IAI46_19960at 4209.592 kb on + strand, within IAI46_19960at 4209.592 kb on + strand, within IAI46_19960at 4209.592 kb on + strand, within IAI46_19960at 4209.592 kb on + strand, within IAI46_19960at 4209.592 kb on + strand, within IAI46_19960at 4209.592 kb on + strand, within IAI46_19960at 4209.593 kb on - strand, within IAI46_19960at 4209.593 kb on - strand, within IAI46_19960at 4209.593 kb on - strand, within IAI46_19960at 4209.594 kb on + strand, within IAI46_19960at 4209.616 kb on + strand, within IAI46_19960at 4209.616 kb on + strand, within IAI46_19960at 4209.646 kb on + strand, within IAI46_19960at 4209.647 kb on - strand, within IAI46_19960at 4209.660 kb on + strand, within IAI46_19960at 4209.661 kb on - strand, within IAI46_19960at 4209.671 kb on + strand, within IAI46_19960at 4209.769 kb on - strand, within IAI46_19960at 4209.883 kb on + strand, within IAI46_19960at 4209.883 kb on + strand, within IAI46_19960at 4209.884 kb on - strand, within IAI46_19960at 4209.902 kb on - strand, within IAI46_19960at 4210.044 kb on + strand, within IAI46_19960at 4210.044 kb on + strand, within IAI46_19960at 4210.045 kb on - strand, within IAI46_19960at 4210.045 kb on - strand, within IAI46_19960at 4210.178 kb on + strandat 4210.178 kb on + strandat 4210.178 kb on + strandat 4210.178 kb on + strandat 4210.179 kb on - strandat 4210.179 kb on - strandat 4210.179 kb on - strandat 4210.179 kb on - strandat 4210.190 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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4,207,123 + IAI46_19950 0.19 +0.6
4,207,123 + IAI46_19950 0.19 +0.2
4,207,124 - IAI46_19950 0.19 -0.1
4,207,163 + IAI46_19950 0.23 -0.2
4,207,165 + IAI46_19950 0.23 +0.5
4,207,165 + IAI46_19950 0.23 -0.2
4,207,166 - IAI46_19950 0.23 +0.5
4,207,166 - IAI46_19950 0.23 -0.7
4,207,169 + IAI46_19950 0.23 +0.1
4,207,258 + IAI46_19950 0.31 -0.1
4,207,259 - IAI46_19950 0.31 +0.3
4,207,265 + IAI46_19950 0.31 -0.1
4,207,336 + IAI46_19950 0.37 +0.4
4,207,336 + IAI46_19950 0.37 -0.9
4,207,337 - IAI46_19950 0.37 +0.5
4,207,359 + IAI46_19950 0.39 -0.7
4,207,365 + IAI46_19950 0.39 +0.4
4,207,366 - IAI46_19950 0.39 +0.4
4,207,366 - IAI46_19950 0.39 +0.0
4,207,414 + IAI46_19950 0.43 +0.8
4,207,444 + IAI46_19950 0.46 +0.0
4,207,448 - IAI46_19950 0.46 -0.2
4,207,448 - IAI46_19950 0.46 +0.5
4,207,484 - IAI46_19950 0.49 +2.0
4,207,592 + IAI46_19950 0.58 +0.9
4,207,620 - IAI46_19950 0.61 -0.3
4,207,668 + IAI46_19950 0.65 +0.1
4,207,669 - IAI46_19950 0.65 +0.7
4,207,725 - IAI46_19950 0.69 -0.8
4,207,789 + IAI46_19950 0.75 -0.7
4,207,789 + IAI46_19950 0.75 +0.2
4,207,789 + IAI46_19950 0.75 -0.5
4,207,824 + IAI46_19950 0.78 +0.1
4,207,825 - IAI46_19950 0.78 +0.4
4,207,830 - IAI46_19950 0.78 +0.8
4,207,867 + IAI46_19950 0.81 +0.4
4,208,022 - +0.4
4,208,022 - -0.6
4,208,022 - +0.6
4,208,025 + +1.3
4,208,026 - -0.2
4,208,026 - -0.1
4,208,026 - +0.6
4,208,037 - -1.8
4,208,065 + +0.2
4,208,066 - -0.1
4,208,069 + +1.3
4,208,070 - -0.8
4,208,256 + IAI46_19955 0.15 -1.3
4,208,257 - IAI46_19955 0.15 -0.2
4,208,409 + IAI46_19955 0.29 -1.6
4,208,505 + IAI46_19955 0.37 +0.3
4,208,505 + IAI46_19955 0.37 +0.0
4,208,506 - IAI46_19955 0.38 -0.2
4,208,716 + IAI46_19955 0.56 +0.3
4,208,716 + IAI46_19955 0.56 -0.4
4,208,779 - IAI46_19955 0.62 -1.0
4,208,925 + IAI46_19955 0.75 +1.0
4,209,015 - IAI46_19955 0.83 +0.4
4,209,015 - IAI46_19955 0.83 +1.2
4,209,015 - IAI46_19955 0.83 -0.0
4,209,151 + -0.2
4,209,174 - +0.4
4,209,247 + -1.2
4,209,248 - +0.5
4,209,267 + +0.8
4,209,267 + -0.4
4,209,267 + +0.5
4,209,311 + +1.0
4,209,312 - -0.7
4,209,466 + IAI46_19960 0.20 -1.1
4,209,467 - IAI46_19960 0.20 -0.6
4,209,472 - IAI46_19960 0.20 -0.3
4,209,478 + IAI46_19960 0.21 +0.8
4,209,478 + IAI46_19960 0.21 -0.4
4,209,479 - IAI46_19960 0.21 -0.1
4,209,481 - IAI46_19960 0.21 +0.3
4,209,481 - IAI46_19960 0.21 +1.0
4,209,481 - IAI46_19960 0.21 +0.7
4,209,481 - IAI46_19960 0.21 +0.5
4,209,481 - IAI46_19960 0.21 -0.7
4,209,508 + IAI46_19960 0.24 +0.2
4,209,508 + IAI46_19960 0.24 -0.4
4,209,508 + IAI46_19960 0.24 +0.6
4,209,509 - IAI46_19960 0.24 +1.1
4,209,509 - IAI46_19960 0.24 -1.6
4,209,509 - IAI46_19960 0.24 +1.2
4,209,509 - IAI46_19960 0.24 +0.7
4,209,547 + IAI46_19960 0.28 +0.4
4,209,547 + IAI46_19960 0.28 +0.4
4,209,548 - IAI46_19960 0.28 +0.2
4,209,578 - IAI46_19960 0.31 +0.3
4,209,578 - IAI46_19960 0.31 -2.1
4,209,592 + IAI46_19960 0.33 -1.2
4,209,592 + IAI46_19960 0.33 +0.3
4,209,592 + IAI46_19960 0.33 +0.8
4,209,592 + IAI46_19960 0.33 -0.5
4,209,592 + IAI46_19960 0.33 +0.6
4,209,592 + IAI46_19960 0.33 -0.2
4,209,592 + IAI46_19960 0.33 -0.3
4,209,592 + IAI46_19960 0.33 +1.1
4,209,593 - IAI46_19960 0.33 +0.4
4,209,593 - IAI46_19960 0.33 +0.2
4,209,593 - IAI46_19960 0.33 -1.1
4,209,594 + IAI46_19960 0.33 +0.5
4,209,616 + IAI46_19960 0.35 -0.4
4,209,616 + IAI46_19960 0.35 -1.0
4,209,646 + IAI46_19960 0.38 -0.2
4,209,647 - IAI46_19960 0.38 +0.2
4,209,660 + IAI46_19960 0.39 +0.4
4,209,661 - IAI46_19960 0.39 -0.5
4,209,671 + IAI46_19960 0.40 +0.2
4,209,769 - IAI46_19960 0.50 +0.2
4,209,883 + IAI46_19960 0.62 -0.4
4,209,883 + IAI46_19960 0.62 +0.6
4,209,884 - IAI46_19960 0.62 -0.2
4,209,902 - IAI46_19960 0.64 +0.9
4,210,044 + IAI46_19960 0.78 +0.3
4,210,044 + IAI46_19960 0.78 +0.6
4,210,045 - IAI46_19960 0.78 -0.4
4,210,045 - IAI46_19960 0.78 -0.6
4,210,178 + +0.6
4,210,178 + +1.0
4,210,178 + +0.3
4,210,178 + -0.3
4,210,179 - +0.4
4,210,179 - -0.4
4,210,179 - +1.0
4,210,179 - -0.0
4,210,190 + +0.5

Or see this region's nucleotide sequence