Strain Fitness in Serratia liquefaciens MT49 around IAI46_19745

Experiment: copper (II) chloride 15 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_19740 and IAI46_19745 overlap by 8 nucleotidesIAI46_19745 and IAI46_19750 overlap by 14 nucleotides IAI46_19740: IAI46_19740 - DEAD/DEAH box helicase family protein, at 4,168,593 to 4,169,759 _19740 IAI46_19745: IAI46_19745 - hypothetical protein, at 4,169,752 to 4,171,221 _19745 IAI46_19750: IAI46_19750 - MBL fold metallo-hydrolase, at 4,171,208 to 4,172,194 _19750 Position (kb) 4169 4170 4171 4172Strain fitness (log2 ratio) -1 0 1 2at 4168.763 kb on + strand, within IAI46_19740at 4169.021 kb on + strand, within IAI46_19740at 4169.283 kb on - strand, within IAI46_19740at 4169.331 kb on - strand, within IAI46_19740at 4169.452 kb on - strand, within IAI46_19740at 4169.586 kb on - strand, within IAI46_19740at 4169.593 kb on + strand, within IAI46_19740at 4169.765 kb on + strandat 4169.765 kb on + strandat 4169.898 kb on + strandat 4169.943 kb on - strand, within IAI46_19745at 4169.943 kb on - strand, within IAI46_19745at 4169.943 kb on - strand, within IAI46_19745at 4170.210 kb on - strand, within IAI46_19745at 4170.268 kb on - strand, within IAI46_19745at 4170.273 kb on - strand, within IAI46_19745at 4170.784 kb on - strand, within IAI46_19745at 4170.882 kb on + strand, within IAI46_19745at 4170.882 kb on + strand, within IAI46_19745at 4170.892 kb on - strand, within IAI46_19745at 4170.946 kb on - strand, within IAI46_19745at 4171.163 kb on - strandat 4171.167 kb on - strandat 4171.167 kb on - strandat 4171.167 kb on - strandat 4171.224 kb on + strandat 4171.229 kb on + strandat 4171.229 kb on + strandat 4171.252 kb on - strandat 4171.370 kb on - strand, within IAI46_19750at 4171.453 kb on + strand, within IAI46_19750at 4171.588 kb on - strand, within IAI46_19750at 4171.622 kb on - strand, within IAI46_19750at 4171.673 kb on - strand, within IAI46_19750at 4171.868 kb on - strand, within IAI46_19750at 4172.048 kb on - strand, within IAI46_19750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
remove
4,168,763 + IAI46_19740 0.15 -1.6
4,169,021 + IAI46_19740 0.37 -0.0
4,169,283 - IAI46_19740 0.59 +0.3
4,169,331 - IAI46_19740 0.63 +0.8
4,169,452 - IAI46_19740 0.74 -0.2
4,169,586 - IAI46_19740 0.85 +0.0
4,169,593 + IAI46_19740 0.86 -0.6
4,169,765 + -0.0
4,169,765 + +1.1
4,169,898 + -0.1
4,169,943 - IAI46_19745 0.13 -0.5
4,169,943 - IAI46_19745 0.13 -0.0
4,169,943 - IAI46_19745 0.13 -0.0
4,170,210 - IAI46_19745 0.31 +0.1
4,170,268 - IAI46_19745 0.35 +0.3
4,170,273 - IAI46_19745 0.35 +0.2
4,170,784 - IAI46_19745 0.70 -0.0
4,170,882 + IAI46_19745 0.77 +0.1
4,170,882 + IAI46_19745 0.77 -1.2
4,170,892 - IAI46_19745 0.78 -0.0
4,170,946 - IAI46_19745 0.81 -0.5
4,171,163 - +1.0
4,171,167 - +0.5
4,171,167 - +0.2
4,171,167 - -0.2
4,171,224 + +1.3
4,171,229 + +2.0
4,171,229 + +2.2
4,171,252 - -0.8
4,171,370 - IAI46_19750 0.16 +0.2
4,171,453 + IAI46_19750 0.25 +0.3
4,171,588 - IAI46_19750 0.39 +0.0
4,171,622 - IAI46_19750 0.42 +0.9
4,171,673 - IAI46_19750 0.47 -0.6
4,171,868 - IAI46_19750 0.67 +0.2
4,172,048 - IAI46_19750 0.85 -0.6

Or see this region's nucleotide sequence