Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_19740 and IAI46_19745 overlap by 8 nucleotides IAI46_19745 and IAI46_19750 overlap by 14 nucleotides
IAI46_19740: IAI46_19740 - DEAD/DEAH box helicase family protein, at 4,168,593 to 4,169,759
_19740
IAI46_19745: IAI46_19745 - hypothetical protein, at 4,169,752 to 4,171,221
_19745
IAI46_19750: IAI46_19750 - MBL fold metallo-hydrolase, at 4,171,208 to 4,172,194
_19750
Position (kb)
4169
4170
4171
4172 Strain fitness (log2 ratio)
-1
0
1
2 at 4168.763 kb on + strand, within IAI46_19740 at 4169.021 kb on + strand, within IAI46_19740 at 4169.283 kb on - strand, within IAI46_19740 at 4169.331 kb on - strand, within IAI46_19740 at 4169.452 kb on - strand, within IAI46_19740 at 4169.586 kb on - strand, within IAI46_19740 at 4169.593 kb on + strand, within IAI46_19740 at 4169.765 kb on + strand at 4169.765 kb on + strand at 4169.898 kb on + strand at 4169.943 kb on - strand, within IAI46_19745 at 4169.943 kb on - strand, within IAI46_19745 at 4169.943 kb on - strand, within IAI46_19745 at 4170.210 kb on - strand, within IAI46_19745 at 4170.268 kb on - strand, within IAI46_19745 at 4170.273 kb on - strand, within IAI46_19745 at 4170.784 kb on - strand, within IAI46_19745 at 4170.882 kb on + strand, within IAI46_19745 at 4170.882 kb on + strand, within IAI46_19745 at 4170.892 kb on - strand, within IAI46_19745 at 4170.946 kb on - strand, within IAI46_19745 at 4171.163 kb on - strand at 4171.167 kb on - strand at 4171.167 kb on - strand at 4171.167 kb on - strand at 4171.224 kb on + strand at 4171.229 kb on + strand at 4171.229 kb on + strand at 4171.252 kb on - strand at 4171.370 kb on - strand, within IAI46_19750 at 4171.453 kb on + strand, within IAI46_19750 at 4171.588 kb on - strand, within IAI46_19750 at 4171.622 kb on - strand, within IAI46_19750 at 4171.673 kb on - strand, within IAI46_19750 at 4171.868 kb on - strand, within IAI46_19750 at 4172.048 kb on - strand, within IAI46_19750
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 4,168,763 + IAI46_19740 0.15 -1.6 4,169,021 + IAI46_19740 0.37 -0.0 4,169,283 - IAI46_19740 0.59 +0.3 4,169,331 - IAI46_19740 0.63 +0.8 4,169,452 - IAI46_19740 0.74 -0.2 4,169,586 - IAI46_19740 0.85 +0.0 4,169,593 + IAI46_19740 0.86 -0.6 4,169,765 + -0.0 4,169,765 + +1.1 4,169,898 + -0.1 4,169,943 - IAI46_19745 0.13 -0.5 4,169,943 - IAI46_19745 0.13 -0.0 4,169,943 - IAI46_19745 0.13 -0.0 4,170,210 - IAI46_19745 0.31 +0.1 4,170,268 - IAI46_19745 0.35 +0.3 4,170,273 - IAI46_19745 0.35 +0.2 4,170,784 - IAI46_19745 0.70 -0.0 4,170,882 + IAI46_19745 0.77 +0.1 4,170,882 + IAI46_19745 0.77 -1.2 4,170,892 - IAI46_19745 0.78 -0.0 4,170,946 - IAI46_19745 0.81 -0.5 4,171,163 - +1.0 4,171,167 - +0.5 4,171,167 - +0.2 4,171,167 - -0.2 4,171,224 + +1.3 4,171,229 + +2.0 4,171,229 + +2.2 4,171,252 - -0.8 4,171,370 - IAI46_19750 0.16 +0.2 4,171,453 + IAI46_19750 0.25 +0.3 4,171,588 - IAI46_19750 0.39 +0.0 4,171,622 - IAI46_19750 0.42 +0.9 4,171,673 - IAI46_19750 0.47 -0.6 4,171,868 - IAI46_19750 0.67 +0.2 4,172,048 - IAI46_19750 0.85 -0.6
Or see this region's nucleotide sequence