Strain Fitness in Serratia liquefaciens MT49 around IAI46_16910

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16905 and IAI46_16910 are separated by 303 nucleotidesIAI46_16910 and IAI46_16915 are separated by 39 nucleotides IAI46_16905: IAI46_16905 - MFS transporter, at 3,544,033 to 3,545,328 _16905 IAI46_16910: IAI46_16910 - FadR family transcriptional regulator, at 3,545,632 to 3,546,348 _16910 IAI46_16915: IAI46_16915 - starvation-sensing protein RspA, at 3,546,388 to 3,547,641 _16915 Position (kb) 3545 3546 3547Strain fitness (log2 ratio) -2 -1 0 1at 3544.783 kb on - strand, within IAI46_16905at 3544.785 kb on + strand, within IAI46_16905at 3544.786 kb on - strand, within IAI46_16905at 3544.801 kb on + strand, within IAI46_16905at 3544.801 kb on + strand, within IAI46_16905at 3544.802 kb on - strand, within IAI46_16905at 3544.807 kb on - strand, within IAI46_16905at 3544.946 kb on - strand, within IAI46_16905at 3545.105 kb on + strand, within IAI46_16905at 3545.185 kb on - strand, within IAI46_16905at 3545.225 kb on + strandat 3545.226 kb on - strandat 3545.243 kb on + strandat 3545.243 kb on + strandat 3545.243 kb on + strandat 3545.244 kb on - strandat 3545.244 kb on - strandat 3545.255 kb on + strandat 3545.262 kb on + strandat 3545.262 kb on + strandat 3545.351 kb on + strandat 3545.391 kb on + strandat 3545.529 kb on + strandat 3545.529 kb on + strandat 3545.529 kb on + strandat 3545.529 kb on + strandat 3545.529 kb on + strandat 3545.530 kb on - strandat 3545.530 kb on - strandat 3545.589 kb on + strandat 3545.589 kb on + strandat 3545.688 kb on - strandat 3545.727 kb on + strand, within IAI46_16910at 3545.727 kb on + strand, within IAI46_16910at 3545.782 kb on - strand, within IAI46_16910at 3545.880 kb on - strand, within IAI46_16910at 3545.985 kb on - strand, within IAI46_16910at 3545.985 kb on - strand, within IAI46_16910at 3546.148 kb on - strand, within IAI46_16910at 3546.157 kb on + strand, within IAI46_16910at 3546.157 kb on + strand, within IAI46_16910at 3546.157 kb on + strand, within IAI46_16910at 3546.158 kb on - strand, within IAI46_16910at 3546.158 kb on - strand, within IAI46_16910at 3546.161 kb on - strand, within IAI46_16910at 3546.161 kb on - strand, within IAI46_16910at 3546.161 kb on - strand, within IAI46_16910at 3546.163 kb on + strand, within IAI46_16910at 3546.163 kb on + strand, within IAI46_16910at 3546.163 kb on + strand, within IAI46_16910at 3546.163 kb on + strand, within IAI46_16910at 3546.196 kb on - strand, within IAI46_16910at 3546.234 kb on + strand, within IAI46_16910at 3546.369 kb on + strandat 3546.370 kb on - strandat 3546.484 kb on - strandat 3546.488 kb on - strandat 3546.594 kb on + strand, within IAI46_16915at 3546.701 kb on - strand, within IAI46_16915at 3546.760 kb on - strand, within IAI46_16915at 3546.760 kb on - strand, within IAI46_16915at 3546.814 kb on + strand, within IAI46_16915at 3546.814 kb on + strand, within IAI46_16915at 3546.815 kb on - strand, within IAI46_16915at 3546.815 kb on - strand, within IAI46_16915at 3546.902 kb on + strand, within IAI46_16915at 3546.981 kb on + strand, within IAI46_16915at 3547.046 kb on + strand, within IAI46_16915at 3547.065 kb on - strand, within IAI46_16915at 3547.065 kb on - strand, within IAI46_16915at 3547.077 kb on + strand, within IAI46_16915at 3547.169 kb on + strand, within IAI46_16915at 3547.170 kb on - strand, within IAI46_16915at 3547.189 kb on + strand, within IAI46_16915at 3547.189 kb on + strand, within IAI46_16915at 3547.190 kb on - strand, within IAI46_16915at 3547.194 kb on - strand, within IAI46_16915at 3547.194 kb on - strand, within IAI46_16915at 3547.194 kb on - strand, within IAI46_16915at 3547.234 kb on + strand, within IAI46_16915at 3547.234 kb on + strand, within IAI46_16915at 3547.268 kb on + strand, within IAI46_16915at 3547.311 kb on - strand, within IAI46_16915at 3547.312 kb on + strand, within IAI46_16915at 3547.313 kb on - strand, within IAI46_16915at 3547.333 kb on - strand, within IAI46_16915

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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3,544,783 - IAI46_16905 0.58 +0.0
3,544,785 + IAI46_16905 0.58 +0.5
3,544,786 - IAI46_16905 0.58 -2.0
3,544,801 + IAI46_16905 0.59 +0.0
3,544,801 + IAI46_16905 0.59 -0.1
3,544,802 - IAI46_16905 0.59 +0.6
3,544,807 - IAI46_16905 0.60 +1.3
3,544,946 - IAI46_16905 0.70 -0.2
3,545,105 + IAI46_16905 0.83 +0.2
3,545,185 - IAI46_16905 0.89 +0.3
3,545,225 + +0.9
3,545,226 - +1.5
3,545,243 + -0.2
3,545,243 + +0.2
3,545,243 + -0.2
3,545,244 - +1.0
3,545,244 - +0.1
3,545,255 + -0.5
3,545,262 + -0.0
3,545,262 + +0.5
3,545,351 + -0.9
3,545,391 + +0.3
3,545,529 + -1.2
3,545,529 + +0.4
3,545,529 + +0.0
3,545,529 + +0.6
3,545,529 + +0.0
3,545,530 - +0.5
3,545,530 - -0.4
3,545,589 + +1.2
3,545,589 + +0.4
3,545,688 - -0.7
3,545,727 + IAI46_16910 0.13 -0.7
3,545,727 + IAI46_16910 0.13 +1.0
3,545,782 - IAI46_16910 0.21 -0.2
3,545,880 - IAI46_16910 0.35 -0.6
3,545,985 - IAI46_16910 0.49 +0.9
3,545,985 - IAI46_16910 0.49 -0.7
3,546,148 - IAI46_16910 0.72 +0.4
3,546,157 + IAI46_16910 0.73 -0.4
3,546,157 + IAI46_16910 0.73 +1.0
3,546,157 + IAI46_16910 0.73 -0.2
3,546,158 - IAI46_16910 0.73 +1.2
3,546,158 - IAI46_16910 0.73 -1.9
3,546,161 - IAI46_16910 0.74 +0.4
3,546,161 - IAI46_16910 0.74 +0.7
3,546,161 - IAI46_16910 0.74 +0.1
3,546,163 + IAI46_16910 0.74 -0.6
3,546,163 + IAI46_16910 0.74 -0.7
3,546,163 + IAI46_16910 0.74 +0.1
3,546,163 + IAI46_16910 0.74 -0.2
3,546,196 - IAI46_16910 0.79 -1.7
3,546,234 + IAI46_16910 0.84 +0.9
3,546,369 + -0.7
3,546,370 - +0.7
3,546,484 - +0.7
3,546,488 - +0.5
3,546,594 + IAI46_16915 0.16 +0.5
3,546,701 - IAI46_16915 0.25 -0.3
3,546,760 - IAI46_16915 0.30 +1.3
3,546,760 - IAI46_16915 0.30 +0.3
3,546,814 + IAI46_16915 0.34 +0.8
3,546,814 + IAI46_16915 0.34 +0.6
3,546,815 - IAI46_16915 0.34 +0.1
3,546,815 - IAI46_16915 0.34 +1.0
3,546,902 + IAI46_16915 0.41 +0.4
3,546,981 + IAI46_16915 0.47 +0.6
3,547,046 + IAI46_16915 0.52 +0.5
3,547,065 - IAI46_16915 0.54 -2.1
3,547,065 - IAI46_16915 0.54 +0.8
3,547,077 + IAI46_16915 0.55 -0.5
3,547,169 + IAI46_16915 0.62 -0.6
3,547,170 - IAI46_16915 0.62 +0.7
3,547,189 + IAI46_16915 0.64 +1.3
3,547,189 + IAI46_16915 0.64 -0.2
3,547,190 - IAI46_16915 0.64 -1.9
3,547,194 - IAI46_16915 0.64 -0.2
3,547,194 - IAI46_16915 0.64 +0.9
3,547,194 - IAI46_16915 0.64 +0.7
3,547,234 + IAI46_16915 0.67 +0.3
3,547,234 + IAI46_16915 0.67 +0.4
3,547,268 + IAI46_16915 0.70 -0.5
3,547,311 - IAI46_16915 0.74 -0.6
3,547,312 + IAI46_16915 0.74 -0.6
3,547,313 - IAI46_16915 0.74 +0.5
3,547,333 - IAI46_16915 0.75 -1.3

Or see this region's nucleotide sequence