Strain Fitness in Serratia liquefaciens MT49 around IAI46_13795

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13785 and IAI46_13790 overlap by 1 nucleotidesIAI46_13790 and IAI46_13795 overlap by 8 nucleotidesIAI46_13795 and IAI46_13800 are separated by 32 nucleotidesIAI46_13800 and IAI46_13805 overlap by 8 nucleotides IAI46_13785: IAI46_13785 - phosphoadenosine phosphosulfate reductase family protein, at 2,932,479 to 2,933,396 _13785 IAI46_13790: IAI46_13790 - Lar family restriction alleviation protein, at 2,933,396 to 2,933,593 _13790 IAI46_13795: IAI46_13795 - stationary-phase-induced ribosome-associated protein, at 2,933,586 to 2,933,804 _13795 IAI46_13800: IAI46_13800 - hypothetical protein, at 2,933,837 to 2,934,115 _13800 IAI46_13805: IAI46_13805 - hypothetical protein, at 2,934,108 to 2,934,554 _13805 Position (kb) 2933 2934Strain fitness (log2 ratio) -1 0 1at 2932.718 kb on + strand, within IAI46_13785at 2932.718 kb on + strand, within IAI46_13785at 2932.718 kb on + strand, within IAI46_13785at 2932.718 kb on + strand, within IAI46_13785at 2932.718 kb on + strand, within IAI46_13785at 2932.718 kb on + strand, within IAI46_13785at 2932.854 kb on + strand, within IAI46_13785at 2933.305 kb on - strandat 2933.471 kb on + strand, within IAI46_13790at 2933.471 kb on + strand, within IAI46_13790at 2933.471 kb on + strand, within IAI46_13790at 2933.471 kb on + strand, within IAI46_13790at 2933.472 kb on - strand, within IAI46_13790at 2933.492 kb on - strand, within IAI46_13790at 2933.515 kb on + strand, within IAI46_13790at 2933.516 kb on - strand, within IAI46_13790at 2933.516 kb on - strand, within IAI46_13790at 2933.521 kb on + strand, within IAI46_13790at 2933.521 kb on + strand, within IAI46_13790at 2933.523 kb on + strand, within IAI46_13790at 2933.524 kb on - strand, within IAI46_13790at 2933.597 kb on + strandat 2933.695 kb on + strand, within IAI46_13795at 2933.752 kb on + strand, within IAI46_13795at 2933.768 kb on - strand, within IAI46_13795at 2933.768 kb on - strand, within IAI46_13795at 2933.770 kb on + strand, within IAI46_13795at 2933.801 kb on - strandat 2933.801 kb on - strandat 2933.833 kb on + strandat 2933.833 kb on + strandat 2933.834 kb on - strandat 2933.849 kb on - strandat 2933.900 kb on + strand, within IAI46_13800at 2933.900 kb on + strand, within IAI46_13800at 2933.900 kb on + strand, within IAI46_13800at 2933.901 kb on - strand, within IAI46_13800at 2933.901 kb on - strand, within IAI46_13800at 2933.901 kb on - strand, within IAI46_13800at 2934.113 kb on + strandat 2934.244 kb on - strand, within IAI46_13805

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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2,932,718 + IAI46_13785 0.26 -1.6
2,932,718 + IAI46_13785 0.26 +0.4
2,932,718 + IAI46_13785 0.26 -0.1
2,932,718 + IAI46_13785 0.26 -1.3
2,932,718 + IAI46_13785 0.26 +0.7
2,932,718 + IAI46_13785 0.26 +0.6
2,932,854 + IAI46_13785 0.41 -0.8
2,933,305 - +0.9
2,933,471 + IAI46_13790 0.38 -0.0
2,933,471 + IAI46_13790 0.38 -1.4
2,933,471 + IAI46_13790 0.38 +0.0
2,933,471 + IAI46_13790 0.38 -1.0
2,933,472 - IAI46_13790 0.38 +0.6
2,933,492 - IAI46_13790 0.48 -0.9
2,933,515 + IAI46_13790 0.60 -0.4
2,933,516 - IAI46_13790 0.61 +0.2
2,933,516 - IAI46_13790 0.61 -0.0
2,933,521 + IAI46_13790 0.63 +0.3
2,933,521 + IAI46_13790 0.63 -1.0
2,933,523 + IAI46_13790 0.64 +0.1
2,933,524 - IAI46_13790 0.65 +0.5
2,933,597 + -0.2
2,933,695 + IAI46_13795 0.50 -1.0
2,933,752 + IAI46_13795 0.76 -1.1
2,933,768 - IAI46_13795 0.83 +0.9
2,933,768 - IAI46_13795 0.83 -1.3
2,933,770 + IAI46_13795 0.84 +0.4
2,933,801 - +0.4
2,933,801 - +0.6
2,933,833 + -0.1
2,933,833 + +0.3
2,933,834 - +0.7
2,933,849 - -0.7
2,933,900 + IAI46_13800 0.23 +0.3
2,933,900 + IAI46_13800 0.23 +0.3
2,933,900 + IAI46_13800 0.23 +1.3
2,933,901 - IAI46_13800 0.23 +1.2
2,933,901 - IAI46_13800 0.23 +0.1
2,933,901 - IAI46_13800 0.23 +0.9
2,934,113 + -0.6
2,934,244 - IAI46_13805 0.30 +0.3

Or see this region's nucleotide sequence