Strain Fitness in Serratia liquefaciens MT49 around IAI46_13095

Experiment: copper (II) chloride 15 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_13090 and IAI46_13095 overlap by 4 nucleotidesIAI46_13095 and IAI46_13100 overlap by 8 nucleotidesIAI46_13100 and IAI46_13105 are separated by 34 nucleotides IAI46_13090: IAI46_13090 - ABC transporter ATP-binding protein, at 2,793,891 to 2,795,003 _13090 IAI46_13095: IAI46_13095 - ABC transporter ATP-binding protein, at 2,795,000 to 2,795,770 _13095 IAI46_13100: IAI46_13100 - ABC transporter ATP-binding protein, at 2,795,763 to 2,796,476 _13100 IAI46_13105: IAI46_13105 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,796,511 to 2,797,671 _13105 Position (kb) 2794 2795 2796Strain fitness (log2 ratio) -3 -2 -1 0 1at 2794.007 kb on + strand, within IAI46_13090at 2794.008 kb on - strand, within IAI46_13090at 2794.012 kb on - strand, within IAI46_13090at 2794.044 kb on + strand, within IAI46_13090at 2794.134 kb on + strand, within IAI46_13090at 2794.220 kb on + strand, within IAI46_13090at 2794.309 kb on - strand, within IAI46_13090at 2794.309 kb on - strand, within IAI46_13090at 2794.488 kb on + strand, within IAI46_13090at 2794.497 kb on + strand, within IAI46_13090at 2794.500 kb on + strand, within IAI46_13090at 2794.500 kb on + strand, within IAI46_13090at 2794.501 kb on - strand, within IAI46_13090at 2794.535 kb on + strand, within IAI46_13090at 2794.536 kb on - strand, within IAI46_13090at 2794.999 kb on + strandat 2795.097 kb on - strand, within IAI46_13095at 2795.414 kb on + strand, within IAI46_13095at 2795.463 kb on - strand, within IAI46_13095at 2795.715 kb on + strandat 2796.258 kb on - strand, within IAI46_13100at 2796.385 kb on - strand, within IAI46_13100at 2796.385 kb on - strand, within IAI46_13100at 2796.521 kb on + strandat 2796.521 kb on + strandat 2796.522 kb on - strandat 2796.522 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
remove
2,794,007 + IAI46_13090 0.10 +0.3
2,794,008 - IAI46_13090 0.11 +0.9
2,794,012 - IAI46_13090 0.11 -0.5
2,794,044 + IAI46_13090 0.14 -0.3
2,794,134 + IAI46_13090 0.22 -0.3
2,794,220 + IAI46_13090 0.30 -3.5
2,794,309 - IAI46_13090 0.38 +1.5
2,794,309 - IAI46_13090 0.38 +0.6
2,794,488 + IAI46_13090 0.54 +0.2
2,794,497 + IAI46_13090 0.54 +0.2
2,794,500 + IAI46_13090 0.55 +1.2
2,794,500 + IAI46_13090 0.55 -0.2
2,794,501 - IAI46_13090 0.55 +0.8
2,794,535 + IAI46_13090 0.58 +0.2
2,794,536 - IAI46_13090 0.58 +0.7
2,794,999 + -0.1
2,795,097 - IAI46_13095 0.13 +0.8
2,795,414 + IAI46_13095 0.54 -1.9
2,795,463 - IAI46_13095 0.60 -0.4
2,795,715 + -1.3
2,796,258 - IAI46_13100 0.69 +0.5
2,796,385 - IAI46_13100 0.87 -0.3
2,796,385 - IAI46_13100 0.87 -0.5
2,796,521 + +0.1
2,796,521 + +0.4
2,796,522 - -0.2
2,796,522 - +1.0

Or see this region's nucleotide sequence