Strain Fitness in Serratia liquefaciens MT49 around IAI46_11920

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11915 and IAI46_11920 are separated by 99 nucleotidesIAI46_11920 and IAI46_11925 overlap by 4 nucleotidesIAI46_11925 and IAI46_11930 are separated by 38 nucleotides IAI46_11915: IAI46_11915 - LysR family transcriptional regulator, at 2,523,679 to 2,524,599 _11915 IAI46_11920: IAI46_11920 - chromate transporter, at 2,524,699 to 2,525,271 _11920 IAI46_11925: IAI46_11925 - chromate transporter, at 2,525,268 to 2,525,789 _11925 IAI46_11930: IAI46_11930 - AprI/Inh family metalloprotease inhibitor, at 2,525,828 to 2,526,187 _11930 Position (kb) 2524 2525 2526Strain fitness (log2 ratio) -2 -1 0 1at 2523.770 kb on + strandat 2523.971 kb on + strand, within IAI46_11915at 2523.971 kb on + strand, within IAI46_11915at 2523.971 kb on + strand, within IAI46_11915at 2523.972 kb on - strand, within IAI46_11915at 2523.972 kb on - strand, within IAI46_11915at 2523.972 kb on - strand, within IAI46_11915at 2523.972 kb on - strand, within IAI46_11915at 2524.006 kb on - strand, within IAI46_11915at 2524.345 kb on + strand, within IAI46_11915at 2524.510 kb on + strandat 2524.824 kb on + strand, within IAI46_11920at 2524.824 kb on + strand, within IAI46_11920at 2524.824 kb on + strand, within IAI46_11920at 2524.867 kb on - strand, within IAI46_11920at 2525.006 kb on + strand, within IAI46_11920at 2525.054 kb on + strand, within IAI46_11920at 2525.055 kb on - strand, within IAI46_11920at 2525.916 kb on - strand, within IAI46_11930at 2526.174 kb on - strandat 2526.179 kb on - strandat 2526.187 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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2,523,770 + -0.6
2,523,971 + IAI46_11915 0.32 +0.7
2,523,971 + IAI46_11915 0.32 -0.1
2,523,971 + IAI46_11915 0.32 +1.0
2,523,972 - IAI46_11915 0.32 +0.1
2,523,972 - IAI46_11915 0.32 +0.5
2,523,972 - IAI46_11915 0.32 -0.5
2,523,972 - IAI46_11915 0.32 +0.9
2,524,006 - IAI46_11915 0.36 +0.7
2,524,345 + IAI46_11915 0.72 +0.3
2,524,510 + -0.1
2,524,824 + IAI46_11920 0.22 +0.5
2,524,824 + IAI46_11920 0.22 +0.4
2,524,824 + IAI46_11920 0.22 -0.1
2,524,867 - IAI46_11920 0.29 +0.6
2,525,006 + IAI46_11920 0.54 +0.5
2,525,054 + IAI46_11920 0.62 +1.1
2,525,055 - IAI46_11920 0.62 -1.0
2,525,916 - IAI46_11930 0.24 -1.8
2,526,174 - +0.4
2,526,179 - -0.3
2,526,187 + -0.5

Or see this region's nucleotide sequence