Strain Fitness in Serratia liquefaciens MT49 around IAI46_11795

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11790 and IAI46_11795 overlap by 17 nucleotidesIAI46_11795 and IAI46_11800 are separated by 167 nucleotides IAI46_11790: IAI46_11790 - xanthine dehydrogenase molybdopterin binding subunit, at 2,489,048 to 2,491,450 _11790 IAI46_11795: IAI46_11795 - xanthine dehydrogenase accessory protein XdhC, at 2,491,434 to 2,492,207 _11795 IAI46_11800: IAI46_11800 - peptidyl-dipeptidase Dcp, at 2,492,375 to 2,494,576 _11800 Position (kb) 2491 2492 2493Strain fitness (log2 ratio) -1 0 1at 2490.537 kb on + strand, within IAI46_11790at 2490.631 kb on + strand, within IAI46_11790at 2490.631 kb on + strand, within IAI46_11790at 2490.632 kb on - strand, within IAI46_11790at 2490.798 kb on - strand, within IAI46_11790at 2490.863 kb on + strand, within IAI46_11790at 2490.864 kb on - strand, within IAI46_11790at 2490.980 kb on + strand, within IAI46_11790at 2491.230 kb on + strandat 2491.264 kb on + strandat 2491.265 kb on - strandat 2491.489 kb on + strandat 2491.652 kb on - strand, within IAI46_11795at 2492.010 kb on + strand, within IAI46_11795at 2492.055 kb on + strand, within IAI46_11795at 2492.188 kb on - strandat 2492.188 kb on - strandat 2492.249 kb on - strandat 2492.308 kb on - strandat 2492.382 kb on + strandat 2492.387 kb on - strandat 2492.387 kb on - strandat 2492.527 kb on + strandat 2492.609 kb on + strand, within IAI46_11800at 2492.886 kb on - strand, within IAI46_11800at 2493.100 kb on + strand, within IAI46_11800at 2493.161 kb on - strand, within IAI46_11800

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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2,490,537 + IAI46_11790 0.62 -1.0
2,490,631 + IAI46_11790 0.66 -0.2
2,490,631 + IAI46_11790 0.66 +1.3
2,490,632 - IAI46_11790 0.66 -0.2
2,490,798 - IAI46_11790 0.73 -0.5
2,490,863 + IAI46_11790 0.76 +0.9
2,490,864 - IAI46_11790 0.76 +0.6
2,490,980 + IAI46_11790 0.80 +0.1
2,491,230 + -0.5
2,491,264 + +1.7
2,491,265 - -1.1
2,491,489 + +0.3
2,491,652 - IAI46_11795 0.28 -1.3
2,492,010 + IAI46_11795 0.74 +0.5
2,492,055 + IAI46_11795 0.80 +1.4
2,492,188 - +0.9
2,492,188 - +0.3
2,492,249 - -0.3
2,492,308 - -0.6
2,492,382 + +0.5
2,492,387 - -0.8
2,492,387 - +0.9
2,492,527 + +1.1
2,492,609 + IAI46_11800 0.11 -0.3
2,492,886 - IAI46_11800 0.23 -1.0
2,493,100 + IAI46_11800 0.33 +0.9
2,493,161 - IAI46_11800 0.36 -1.7

Or see this region's nucleotide sequence