Strain Fitness in Serratia liquefaciens MT49 around IAI46_11635

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11630 and IAI46_11635 are separated by 101 nucleotidesIAI46_11635 and IAI46_11640 are separated by 194 nucleotides IAI46_11630: IAI46_11630 - LysR family transcriptional regulator, at 2,453,628 to 2,454,557 _11630 IAI46_11635: IAI46_11635 - beta-lactamase family protein, at 2,454,659 to 2,455,825 _11635 IAI46_11640: IAI46_11640 - YdgA family protein, at 2,456,020 to 2,457,543 _11640 Position (kb) 2454 2455 2456Strain fitness (log2 ratio) -1 0 1at 2453.815 kb on - strand, within IAI46_11630at 2453.867 kb on + strand, within IAI46_11630at 2454.273 kb on + strand, within IAI46_11630at 2454.667 kb on - strandat 2454.731 kb on - strandat 2454.866 kb on + strand, within IAI46_11635at 2454.866 kb on + strand, within IAI46_11635at 2454.872 kb on - strand, within IAI46_11635at 2455.072 kb on + strand, within IAI46_11635at 2455.081 kb on + strand, within IAI46_11635at 2455.273 kb on + strand, within IAI46_11635at 2455.348 kb on + strand, within IAI46_11635at 2455.349 kb on - strand, within IAI46_11635at 2455.350 kb on + strand, within IAI46_11635at 2455.620 kb on + strand, within IAI46_11635at 2455.839 kb on - strandat 2455.844 kb on + strandat 2456.022 kb on - strandat 2456.153 kb on + strandat 2456.164 kb on - strandat 2456.271 kb on - strand, within IAI46_11640at 2456.282 kb on - strand, within IAI46_11640at 2456.326 kb on - strand, within IAI46_11640at 2456.563 kb on - strand, within IAI46_11640at 2456.811 kb on + strand, within IAI46_11640

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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2,453,815 - IAI46_11630 0.20 -0.7
2,453,867 + IAI46_11630 0.26 +0.0
2,454,273 + IAI46_11630 0.69 +0.2
2,454,667 - +0.3
2,454,731 - -1.7
2,454,866 + IAI46_11635 0.18 +0.5
2,454,866 + IAI46_11635 0.18 +1.1
2,454,872 - IAI46_11635 0.18 -0.4
2,455,072 + IAI46_11635 0.35 +0.4
2,455,081 + IAI46_11635 0.36 +0.0
2,455,273 + IAI46_11635 0.53 +0.8
2,455,348 + IAI46_11635 0.59 -1.0
2,455,349 - IAI46_11635 0.59 +0.9
2,455,350 + IAI46_11635 0.59 +0.6
2,455,620 + IAI46_11635 0.82 -0.8
2,455,839 - +0.4
2,455,844 + -1.4
2,456,022 - +0.3
2,456,153 + +0.7
2,456,164 - +0.4
2,456,271 - IAI46_11640 0.16 +1.2
2,456,282 - IAI46_11640 0.17 -0.1
2,456,326 - IAI46_11640 0.20 +0.7
2,456,563 - IAI46_11640 0.36 +0.6
2,456,811 + IAI46_11640 0.52 +0.4

Or see this region's nucleotide sequence