Strain Fitness in Serratia liquefaciens MT49 around IAI46_09755

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09750 and IAI46_09755 are separated by 552 nucleotidesIAI46_09755 and IAI46_09760 are separated by 11 nucleotidesIAI46_09760 and IAI46_09765 are separated by 141 nucleotides IAI46_09750: IAI46_09750 - ribonuclease E, at 2,064,376 to 2,067,795 _09750 IAI46_09755: IAI46_09755 - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 2,068,348 to 2,069,310 _09755 IAI46_09760: IAI46_09760 - septum formation inhibitor Maf, at 2,069,322 to 2,069,903 _09760 IAI46_09765: IAI46_09765 - 23S rRNA accumulation protein YceD, at 2,070,045 to 2,070,566 _09765 Position (kb) 2068 2069 2070Strain fitness (log2 ratio) -1 0 1at 2067.921 kb on - strandat 2067.932 kb on - strandat 2067.974 kb on - strandat 2068.114 kb on - strandat 2068.183 kb on - strandat 2068.183 kb on - strandat 2068.191 kb on - strandat 2068.191 kb on - strandat 2068.191 kb on - strandat 2068.253 kb on + strandat 2068.294 kb on - strandat 2068.335 kb on - strandat 2068.497 kb on + strand, within IAI46_09755at 2068.498 kb on - strand, within IAI46_09755at 2068.498 kb on - strand, within IAI46_09755at 2068.519 kb on + strand, within IAI46_09755at 2068.786 kb on - strand, within IAI46_09755at 2068.873 kb on + strand, within IAI46_09755at 2068.919 kb on + strand, within IAI46_09755at 2068.919 kb on + strand, within IAI46_09755at 2069.238 kb on + strandat 2069.313 kb on - strandat 2069.492 kb on - strand, within IAI46_09760at 2069.579 kb on - strand, within IAI46_09760at 2069.726 kb on - strand, within IAI46_09760at 2069.831 kb on + strand, within IAI46_09760at 2069.893 kb on - strandat 2069.928 kb on - strandat 2069.972 kb on + strandat 2069.973 kb on - strandat 2070.014 kb on + strandat 2070.030 kb on + strandat 2070.030 kb on + strandat 2070.082 kb on + strandat 2070.306 kb on + strand, within IAI46_09765

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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2,067,921 - -0.1
2,067,932 - -1.2
2,067,974 - +0.7
2,068,114 - -0.8
2,068,183 - -1.4
2,068,183 - -0.2
2,068,191 - +0.2
2,068,191 - +0.1
2,068,191 - -0.3
2,068,253 + +0.2
2,068,294 - -0.6
2,068,335 - -0.1
2,068,497 + IAI46_09755 0.15 +0.8
2,068,498 - IAI46_09755 0.16 +0.4
2,068,498 - IAI46_09755 0.16 +0.0
2,068,519 + IAI46_09755 0.18 +0.7
2,068,786 - IAI46_09755 0.45 -0.1
2,068,873 + IAI46_09755 0.55 -0.6
2,068,919 + IAI46_09755 0.59 +0.4
2,068,919 + IAI46_09755 0.59 -0.3
2,069,238 + +0.7
2,069,313 - -0.3
2,069,492 - IAI46_09760 0.29 -0.4
2,069,579 - IAI46_09760 0.44 -0.1
2,069,726 - IAI46_09760 0.69 -0.3
2,069,831 + IAI46_09760 0.87 -0.1
2,069,893 - -0.3
2,069,928 - -0.6
2,069,972 + -0.4
2,069,973 - +0.6
2,070,014 + +0.7
2,070,030 + +0.4
2,070,030 + -0.6
2,070,082 + -0.6
2,070,306 + IAI46_09765 0.50 -1.2

Or see this region's nucleotide sequence