Strain Fitness in Serratia liquefaciens MT49 around IAI46_05935

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05930 and IAI46_05935 are separated by 38 nucleotidesIAI46_05935 and IAI46_05940 are separated by 3 nucleotidesIAI46_05940 and IAI46_05945 are separated by 189 nucleotides IAI46_05930: IAI46_05930 - peptidoglycan DD-transpeptidase MrdA, at 1,270,579 to 1,272,474 _05930 IAI46_05935: IAI46_05935 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,272,513 to 1,272,983 _05935 IAI46_05940: IAI46_05940 - ribosome silencing factor, at 1,272,987 to 1,273,304 _05940 IAI46_05945: IAI46_05945 - nicotinate-nucleotide adenylyltransferase, at 1,273,494 to 1,274,156 _05945 Position (kb) 1272 1273Strain fitness (log2 ratio) -2 -1 0 1at 1272.502 kb on - strandat 1272.502 kb on - strandat 1272.527 kb on - strandat 1272.589 kb on - strand, within IAI46_05935at 1272.601 kb on - strand, within IAI46_05935at 1272.989 kb on - strandat 1272.989 kb on - strandat 1272.989 kb on - strandat 1273.296 kb on - strandat 1273.381 kb on - strandat 1273.381 kb on - strandat 1273.429 kb on + strandat 1273.430 kb on - strandat 1273.477 kb on - strandat 1273.477 kb on - strandat 1273.479 kb on - strandat 1273.501 kb on + strandat 1273.504 kb on - strandat 1273.504 kb on - strandat 1273.513 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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1,272,502 - +0.3
1,272,502 - +0.3
1,272,527 - -0.7
1,272,589 - IAI46_05935 0.16 +0.3
1,272,601 - IAI46_05935 0.19 -1.2
1,272,989 - +0.2
1,272,989 - -2.3
1,272,989 - -1.1
1,273,296 - +1.0
1,273,381 - -0.4
1,273,381 - +0.7
1,273,429 + +0.3
1,273,430 - +0.5
1,273,477 - +0.8
1,273,477 - -0.2
1,273,479 - -0.8
1,273,501 + -0.2
1,273,504 - -0.1
1,273,504 - -0.3
1,273,513 - +0.2

Or see this region's nucleotide sequence