Strain Fitness in Serratia liquefaciens MT49 around IAI46_04405

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04400 and IAI46_04405 are separated by 205 nucleotidesIAI46_04405 and IAI46_04410 are separated by 78 nucleotides IAI46_04400: IAI46_04400 - glycerophosphodiester phosphodiesterase, at 941,324 to 942,208 _04400 IAI46_04405: IAI46_04405 - DNA polymerase IV, at 942,414 to 943,475 _04405 IAI46_04410: IAI46_04410 - beta-Ala-His dipeptidase, at 943,554 to 945,014 _04410 Position (kb) 942 943 944Strain fitness (log2 ratio) -1 0 1at 941.423 kb on - strand, within IAI46_04400at 941.426 kb on - strand, within IAI46_04400at 941.525 kb on - strand, within IAI46_04400at 941.841 kb on - strand, within IAI46_04400at 941.946 kb on + strand, within IAI46_04400at 941.946 kb on + strand, within IAI46_04400at 941.946 kb on + strand, within IAI46_04400at 941.946 kb on + strand, within IAI46_04400at 941.947 kb on - strand, within IAI46_04400at 941.947 kb on - strand, within IAI46_04400at 941.947 kb on - strand, within IAI46_04400at 941.947 kb on - strand, within IAI46_04400at 942.000 kb on + strand, within IAI46_04400at 942.002 kb on + strand, within IAI46_04400at 942.002 kb on + strand, within IAI46_04400at 942.131 kb on - strandat 942.162 kb on - strandat 942.186 kb on - strandat 942.210 kb on + strandat 942.210 kb on + strandat 942.235 kb on - strandat 942.240 kb on + strandat 942.246 kb on + strandat 942.247 kb on - strandat 942.275 kb on - strandat 942.275 kb on - strandat 942.275 kb on - strandat 942.275 kb on - strandat 942.275 kb on - strandat 942.277 kb on + strandat 942.278 kb on - strandat 942.312 kb on + strandat 942.334 kb on - strandat 942.391 kb on + strandat 942.549 kb on + strand, within IAI46_04405at 942.550 kb on - strand, within IAI46_04405at 942.550 kb on - strand, within IAI46_04405at 942.621 kb on - strand, within IAI46_04405at 942.648 kb on + strand, within IAI46_04405at 942.669 kb on - strand, within IAI46_04405at 942.730 kb on - strand, within IAI46_04405at 942.882 kb on - strand, within IAI46_04405at 942.897 kb on + strand, within IAI46_04405at 942.897 kb on + strand, within IAI46_04405at 942.897 kb on + strand, within IAI46_04405at 942.898 kb on - strand, within IAI46_04405at 942.902 kb on + strand, within IAI46_04405at 942.902 kb on + strand, within IAI46_04405at 942.905 kb on + strand, within IAI46_04405at 942.905 kb on + strand, within IAI46_04405at 942.906 kb on - strand, within IAI46_04405at 943.049 kb on - strand, within IAI46_04405at 943.049 kb on - strand, within IAI46_04405at 943.075 kb on + strand, within IAI46_04405at 943.075 kb on + strand, within IAI46_04405at 943.148 kb on - strand, within IAI46_04405at 943.148 kb on - strand, within IAI46_04405at 943.148 kb on - strand, within IAI46_04405at 943.216 kb on - strand, within IAI46_04405at 943.246 kb on + strand, within IAI46_04405at 943.280 kb on - strand, within IAI46_04405at 943.340 kb on + strand, within IAI46_04405at 943.360 kb on + strand, within IAI46_04405at 943.361 kb on - strand, within IAI46_04405at 943.361 kb on - strand, within IAI46_04405at 943.361 kb on - strand, within IAI46_04405at 943.412 kb on - strandat 943.445 kb on - strandat 943.462 kb on + strandat 943.462 kb on + strandat 943.463 kb on - strandat 943.474 kb on - strandat 943.493 kb on - strandat 943.536 kb on + strandat 943.536 kb on + strandat 943.537 kb on - strandat 943.555 kb on + strandat 943.604 kb on - strandat 943.679 kb on + strandat 943.680 kb on - strandat 943.771 kb on + strand, within IAI46_04410at 943.894 kb on + strand, within IAI46_04410at 943.965 kb on + strand, within IAI46_04410at 943.966 kb on - strand, within IAI46_04410

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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941,423 - IAI46_04400 0.11 +0.5
941,426 - IAI46_04400 0.12 +0.4
941,525 - IAI46_04400 0.23 +0.4
941,841 - IAI46_04400 0.58 +0.0
941,946 + IAI46_04400 0.70 +0.4
941,946 + IAI46_04400 0.70 -0.2
941,946 + IAI46_04400 0.70 +0.2
941,946 + IAI46_04400 0.70 +0.7
941,947 - IAI46_04400 0.70 +1.3
941,947 - IAI46_04400 0.70 +0.2
941,947 - IAI46_04400 0.70 +1.0
941,947 - IAI46_04400 0.70 -0.6
942,000 + IAI46_04400 0.76 -0.0
942,002 + IAI46_04400 0.77 -0.5
942,002 + IAI46_04400 0.77 -0.9
942,131 - +0.2
942,162 - +0.8
942,186 - -0.1
942,210 + +0.6
942,210 + +0.3
942,235 - +0.2
942,240 + +0.1
942,246 + -0.3
942,247 - +0.4
942,275 - +0.3
942,275 - -1.3
942,275 - +0.2
942,275 - +0.2
942,275 - +0.0
942,277 + +0.7
942,278 - -1.1
942,312 + +0.2
942,334 - +0.5
942,391 + +0.1
942,549 + IAI46_04405 0.13 -0.6
942,550 - IAI46_04405 0.13 +0.1
942,550 - IAI46_04405 0.13 +0.6
942,621 - IAI46_04405 0.19 +0.2
942,648 + IAI46_04405 0.22 +0.0
942,669 - IAI46_04405 0.24 +0.7
942,730 - IAI46_04405 0.30 -0.2
942,882 - IAI46_04405 0.44 +1.7
942,897 + IAI46_04405 0.45 +0.5
942,897 + IAI46_04405 0.45 +0.4
942,897 + IAI46_04405 0.45 +0.1
942,898 - IAI46_04405 0.46 -1.6
942,902 + IAI46_04405 0.46 -0.7
942,902 + IAI46_04405 0.46 +1.2
942,905 + IAI46_04405 0.46 +0.9
942,905 + IAI46_04405 0.46 +0.4
942,906 - IAI46_04405 0.46 -0.5
943,049 - IAI46_04405 0.60 +0.8
943,049 - IAI46_04405 0.60 +0.1
943,075 + IAI46_04405 0.62 -0.1
943,075 + IAI46_04405 0.62 +1.3
943,148 - IAI46_04405 0.69 -0.3
943,148 - IAI46_04405 0.69 -0.6
943,148 - IAI46_04405 0.69 +1.0
943,216 - IAI46_04405 0.76 -0.6
943,246 + IAI46_04405 0.78 -0.3
943,280 - IAI46_04405 0.82 +0.5
943,340 + IAI46_04405 0.87 +0.9
943,360 + IAI46_04405 0.89 -0.8
943,361 - IAI46_04405 0.89 -0.4
943,361 - IAI46_04405 0.89 -0.9
943,361 - IAI46_04405 0.89 -0.5
943,412 - +0.9
943,445 - -0.3
943,462 + +0.4
943,462 + +0.3
943,463 - +0.4
943,474 - +0.0
943,493 - +0.7
943,536 + -0.6
943,536 + +0.7
943,537 - -0.8
943,555 + +0.0
943,604 - +0.3
943,679 + -0.3
943,680 - +0.4
943,771 + IAI46_04410 0.15 -0.0
943,894 + IAI46_04410 0.23 -1.1
943,965 + IAI46_04410 0.28 +0.0
943,966 - IAI46_04410 0.28 +0.1

Or see this region's nucleotide sequence