Strain Fitness in Serratia liquefaciens MT49 around IAI46_04380

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04370 and IAI46_04375 overlap by 8 nucleotidesIAI46_04375 and IAI46_04380 are separated by 6 nucleotidesIAI46_04380 and IAI46_04385 are separated by 15 nucleotides IAI46_04370: IAI46_04370 - Na(+)-translocating NADH-quinone reductase subunit C, at 936,761 to 937,555 _04370 IAI46_04375: IAI46_04375 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 937,548 to 938,177 _04375 IAI46_04380: IAI46_04380 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 938,184 to 938,780 _04380 IAI46_04385: IAI46_04385 - NADH:ubiquinone reductase (Na(+)-transporting) subunit F, at 938,796 to 940,019 _04385 Position (kb) 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 937.224 kb on - strand, within IAI46_04370at 937.224 kb on - strand, within IAI46_04370at 937.252 kb on + strand, within IAI46_04370at 937.253 kb on - strand, within IAI46_04370at 937.270 kb on + strand, within IAI46_04370at 937.271 kb on - strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.275 kb on - strand, within IAI46_04370at 937.275 kb on - strand, within IAI46_04370at 937.275 kb on - strand, within IAI46_04370at 937.278 kb on - strand, within IAI46_04370at 937.278 kb on - strand, within IAI46_04370at 937.474 kb on + strand, within IAI46_04370at 937.474 kb on + strand, within IAI46_04370at 937.475 kb on - strand, within IAI46_04370at 937.742 kb on + strand, within IAI46_04375at 937.743 kb on - strand, within IAI46_04375at 937.743 kb on - strand, within IAI46_04375at 937.743 kb on - strand, within IAI46_04375at 937.824 kb on + strand, within IAI46_04375at 937.825 kb on - strand, within IAI46_04375at 937.883 kb on + strand, within IAI46_04375at 937.908 kb on + strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 938.071 kb on - strand, within IAI46_04375at 938.114 kb on + strand, within IAI46_04375at 938.193 kb on + strandat 938.193 kb on + strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.195 kb on + strandat 938.196 kb on - strandat 938.196 kb on - strandat 938.261 kb on + strand, within IAI46_04380at 938.261 kb on + strand, within IAI46_04380at 938.261 kb on + strand, within IAI46_04380at 938.261 kb on + strand, within IAI46_04380at 938.362 kb on - strand, within IAI46_04380at 938.362 kb on - strand, within IAI46_04380at 938.583 kb on + strand, within IAI46_04380at 938.679 kb on + strand, within IAI46_04380at 938.680 kb on - strand, within IAI46_04380at 938.680 kb on - strand, within IAI46_04380at 938.717 kb on + strand, within IAI46_04380at 938.718 kb on - strand, within IAI46_04380at 938.724 kb on - strandat 938.753 kb on + strandat 938.753 kb on + strandat 938.753 kb on + strandat 938.754 kb on - strandat 938.754 kb on - strandat 938.779 kb on - strandat 938.805 kb on - strandat 938.848 kb on + strandat 938.963 kb on + strand, within IAI46_04385at 938.963 kb on + strand, within IAI46_04385at 938.963 kb on + strand, within IAI46_04385at 938.964 kb on - strand, within IAI46_04385at 939.083 kb on + strand, within IAI46_04385at 939.083 kb on + strand, within IAI46_04385at 939.083 kb on + strand, within IAI46_04385at 939.084 kb on - strand, within IAI46_04385at 939.230 kb on + strand, within IAI46_04385at 939.327 kb on + strand, within IAI46_04385at 939.327 kb on + strand, within IAI46_04385at 939.327 kb on + strand, within IAI46_04385at 939.328 kb on - strand, within IAI46_04385at 939.328 kb on - strand, within IAI46_04385at 939.355 kb on - strand, within IAI46_04385at 939.355 kb on - strand, within IAI46_04385at 939.461 kb on + strand, within IAI46_04385at 939.461 kb on + strand, within IAI46_04385at 939.461 kb on + strand, within IAI46_04385at 939.461 kb on + strand, within IAI46_04385at 939.462 kb on - strand, within IAI46_04385at 939.462 kb on - strand, within IAI46_04385at 939.462 kb on - strand, within IAI46_04385at 939.524 kb on + strand, within IAI46_04385at 939.525 kb on - strand, within IAI46_04385at 939.534 kb on + strand, within IAI46_04385at 939.534 kb on + strand, within IAI46_04385at 939.534 kb on + strand, within IAI46_04385at 939.534 kb on + strand, within IAI46_04385at 939.535 kb on - strand, within IAI46_04385at 939.536 kb on + strand, within IAI46_04385at 939.748 kb on - strand, within IAI46_04385at 939.748 kb on - strand, within IAI46_04385

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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937,224 - IAI46_04370 0.58 +0.2
937,224 - IAI46_04370 0.58 +0.5
937,252 + IAI46_04370 0.62 +1.7
937,253 - IAI46_04370 0.62 +0.6
937,270 + IAI46_04370 0.64 -0.1
937,271 - IAI46_04370 0.64 +0.5
937,274 + IAI46_04370 0.65 -0.5
937,274 + IAI46_04370 0.65 +0.2
937,274 + IAI46_04370 0.65 +0.9
937,274 + IAI46_04370 0.65 -0.0
937,274 + IAI46_04370 0.65 -0.9
937,274 + IAI46_04370 0.65 -0.7
937,275 - IAI46_04370 0.65 +0.5
937,275 - IAI46_04370 0.65 -1.3
937,275 - IAI46_04370 0.65 -0.6
937,278 - IAI46_04370 0.65 -1.6
937,278 - IAI46_04370 0.65 +1.2
937,474 + IAI46_04370 0.90 +1.2
937,474 + IAI46_04370 0.90 +0.0
937,475 - IAI46_04370 0.90 +1.5
937,742 + IAI46_04375 0.31 +0.5
937,743 - IAI46_04375 0.31 +0.8
937,743 - IAI46_04375 0.31 +0.5
937,743 - IAI46_04375 0.31 +1.0
937,824 + IAI46_04375 0.44 +0.5
937,825 - IAI46_04375 0.44 +0.4
937,883 + IAI46_04375 0.53 +0.4
937,908 + IAI46_04375 0.57 -0.3
937,909 - IAI46_04375 0.57 +0.2
937,909 - IAI46_04375 0.57 +1.3
937,909 - IAI46_04375 0.57 +0.3
937,909 - IAI46_04375 0.57 +1.1
938,071 - IAI46_04375 0.83 -0.8
938,114 + IAI46_04375 0.90 +0.4
938,193 + +1.2
938,193 + +0.1
938,194 - -0.0
938,194 - -0.2
938,194 - -0.0
938,194 - -2.9
938,194 - -0.4
938,195 + +1.7
938,196 - -0.1
938,196 - -0.6
938,261 + IAI46_04380 0.13 +0.7
938,261 + IAI46_04380 0.13 +0.8
938,261 + IAI46_04380 0.13 +1.5
938,261 + IAI46_04380 0.13 +0.5
938,362 - IAI46_04380 0.30 +0.1
938,362 - IAI46_04380 0.30 +1.0
938,583 + IAI46_04380 0.67 +1.3
938,679 + IAI46_04380 0.83 +0.0
938,680 - IAI46_04380 0.83 +0.2
938,680 - IAI46_04380 0.83 +0.0
938,717 + IAI46_04380 0.89 -0.1
938,718 - IAI46_04380 0.89 -0.1
938,724 - -0.8
938,753 + +1.0
938,753 + -0.1
938,753 + +0.3
938,754 - -0.4
938,754 - +0.4
938,779 - -0.1
938,805 - +0.1
938,848 + +0.3
938,963 + IAI46_04385 0.14 -0.2
938,963 + IAI46_04385 0.14 +0.2
938,963 + IAI46_04385 0.14 -0.3
938,964 - IAI46_04385 0.14 -1.0
939,083 + IAI46_04385 0.23 +0.0
939,083 + IAI46_04385 0.23 -0.1
939,083 + IAI46_04385 0.23 -0.4
939,084 - IAI46_04385 0.24 +0.6
939,230 + IAI46_04385 0.35 +0.3
939,327 + IAI46_04385 0.43 -0.9
939,327 + IAI46_04385 0.43 +0.3
939,327 + IAI46_04385 0.43 +0.3
939,328 - IAI46_04385 0.43 +1.6
939,328 - IAI46_04385 0.43 +0.4
939,355 - IAI46_04385 0.46 +0.3
939,355 - IAI46_04385 0.46 -0.0
939,461 + IAI46_04385 0.54 +1.4
939,461 + IAI46_04385 0.54 +0.7
939,461 + IAI46_04385 0.54 +0.7
939,461 + IAI46_04385 0.54 +0.3
939,462 - IAI46_04385 0.54 +0.7
939,462 - IAI46_04385 0.54 -0.7
939,462 - IAI46_04385 0.54 +0.9
939,524 + IAI46_04385 0.59 +0.5
939,525 - IAI46_04385 0.60 -0.5
939,534 + IAI46_04385 0.60 -0.8
939,534 + IAI46_04385 0.60 +2.6
939,534 + IAI46_04385 0.60 +0.1
939,534 + IAI46_04385 0.60 +0.4
939,535 - IAI46_04385 0.60 -1.3
939,536 + IAI46_04385 0.60 +0.9
939,748 - IAI46_04385 0.78 +0.5
939,748 - IAI46_04385 0.78 -0.1

Or see this region's nucleotide sequence