Strain Fitness in Serratia liquefaciens MT49 around IAI46_04370

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04365 and IAI46_04370 overlap by 11 nucleotidesIAI46_04370 and IAI46_04375 overlap by 8 nucleotidesIAI46_04375 and IAI46_04380 are separated by 6 nucleotides IAI46_04365: IAI46_04365 - NADH:ubiquinone reductase (Na(+)-transporting) subunit B, at 935,530 to 936,771 _04365 IAI46_04370: IAI46_04370 - Na(+)-translocating NADH-quinone reductase subunit C, at 936,761 to 937,555 _04370 IAI46_04375: IAI46_04375 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 937,548 to 938,177 _04375 IAI46_04380: IAI46_04380 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 938,184 to 938,780 _04380 Position (kb) 936 937 938Strain fitness (log2 ratio) -3 -2 -1 0 1at 935.911 kb on + strand, within IAI46_04365at 935.926 kb on + strand, within IAI46_04365at 935.926 kb on + strand, within IAI46_04365at 935.926 kb on + strand, within IAI46_04365at 935.927 kb on - strand, within IAI46_04365at 935.994 kb on + strand, within IAI46_04365at 936.013 kb on - strand, within IAI46_04365at 936.078 kb on + strand, within IAI46_04365at 936.079 kb on - strand, within IAI46_04365at 936.465 kb on + strand, within IAI46_04365at 936.480 kb on + strand, within IAI46_04365at 936.480 kb on + strand, within IAI46_04365at 936.481 kb on - strand, within IAI46_04365at 936.483 kb on + strand, within IAI46_04365at 936.483 kb on + strand, within IAI46_04365at 936.484 kb on - strand, within IAI46_04365at 936.486 kb on + strand, within IAI46_04365at 936.486 kb on + strand, within IAI46_04365at 936.511 kb on + strand, within IAI46_04365at 936.512 kb on - strand, within IAI46_04365at 936.527 kb on + strand, within IAI46_04365at 936.527 kb on + strand, within IAI46_04365at 936.527 kb on + strand, within IAI46_04365at 936.527 kb on + strand, within IAI46_04365at 936.592 kb on - strand, within IAI46_04365at 936.608 kb on - strand, within IAI46_04365at 936.661 kb on + strandat 936.721 kb on + strandat 936.722 kb on - strandat 936.775 kb on + strandat 936.776 kb on - strandat 936.810 kb on + strandat 937.005 kb on + strand, within IAI46_04370at 937.024 kb on + strand, within IAI46_04370at 937.224 kb on - strand, within IAI46_04370at 937.224 kb on - strand, within IAI46_04370at 937.252 kb on + strand, within IAI46_04370at 937.253 kb on - strand, within IAI46_04370at 937.270 kb on + strand, within IAI46_04370at 937.271 kb on - strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.274 kb on + strand, within IAI46_04370at 937.275 kb on - strand, within IAI46_04370at 937.275 kb on - strand, within IAI46_04370at 937.275 kb on - strand, within IAI46_04370at 937.278 kb on - strand, within IAI46_04370at 937.278 kb on - strand, within IAI46_04370at 937.474 kb on + strand, within IAI46_04370at 937.474 kb on + strand, within IAI46_04370at 937.475 kb on - strand, within IAI46_04370at 937.742 kb on + strand, within IAI46_04375at 937.743 kb on - strand, within IAI46_04375at 937.743 kb on - strand, within IAI46_04375at 937.743 kb on - strand, within IAI46_04375at 937.824 kb on + strand, within IAI46_04375at 937.825 kb on - strand, within IAI46_04375at 937.883 kb on + strand, within IAI46_04375at 937.908 kb on + strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 938.071 kb on - strand, within IAI46_04375at 938.114 kb on + strand, within IAI46_04375at 938.193 kb on + strandat 938.193 kb on + strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.195 kb on + strandat 938.196 kb on - strandat 938.196 kb on - strandat 938.261 kb on + strand, within IAI46_04380at 938.261 kb on + strand, within IAI46_04380at 938.261 kb on + strand, within IAI46_04380at 938.261 kb on + strand, within IAI46_04380at 938.362 kb on - strand, within IAI46_04380at 938.362 kb on - strand, within IAI46_04380

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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935,911 + IAI46_04365 0.31 -0.2
935,926 + IAI46_04365 0.32 +0.7
935,926 + IAI46_04365 0.32 +0.3
935,926 + IAI46_04365 0.32 +0.4
935,927 - IAI46_04365 0.32 -0.1
935,994 + IAI46_04365 0.37 +0.5
936,013 - IAI46_04365 0.39 +1.3
936,078 + IAI46_04365 0.44 +1.4
936,079 - IAI46_04365 0.44 -1.0
936,465 + IAI46_04365 0.75 +0.5
936,480 + IAI46_04365 0.76 -0.1
936,480 + IAI46_04365 0.76 +1.2
936,481 - IAI46_04365 0.77 +0.1
936,483 + IAI46_04365 0.77 +0.1
936,483 + IAI46_04365 0.77 +0.1
936,484 - IAI46_04365 0.77 +0.5
936,486 + IAI46_04365 0.77 +0.7
936,486 + IAI46_04365 0.77 +0.3
936,511 + IAI46_04365 0.79 -0.1
936,512 - IAI46_04365 0.79 +0.7
936,527 + IAI46_04365 0.80 -0.0
936,527 + IAI46_04365 0.80 +0.5
936,527 + IAI46_04365 0.80 +0.2
936,527 + IAI46_04365 0.80 +0.3
936,592 - IAI46_04365 0.86 +0.6
936,608 - IAI46_04365 0.87 +0.5
936,661 + +0.4
936,721 + -0.9
936,722 - +0.9
936,775 + -0.7
936,776 - +0.6
936,810 + +0.3
937,005 + IAI46_04370 0.31 +0.1
937,024 + IAI46_04370 0.33 -0.3
937,224 - IAI46_04370 0.58 +0.2
937,224 - IAI46_04370 0.58 +0.5
937,252 + IAI46_04370 0.62 +1.7
937,253 - IAI46_04370 0.62 +0.6
937,270 + IAI46_04370 0.64 -0.1
937,271 - IAI46_04370 0.64 +0.5
937,274 + IAI46_04370 0.65 -0.5
937,274 + IAI46_04370 0.65 +0.2
937,274 + IAI46_04370 0.65 +0.9
937,274 + IAI46_04370 0.65 -0.0
937,274 + IAI46_04370 0.65 -0.9
937,274 + IAI46_04370 0.65 -0.7
937,275 - IAI46_04370 0.65 +0.5
937,275 - IAI46_04370 0.65 -1.3
937,275 - IAI46_04370 0.65 -0.6
937,278 - IAI46_04370 0.65 -1.6
937,278 - IAI46_04370 0.65 +1.2
937,474 + IAI46_04370 0.90 +1.2
937,474 + IAI46_04370 0.90 +0.0
937,475 - IAI46_04370 0.90 +1.5
937,742 + IAI46_04375 0.31 +0.5
937,743 - IAI46_04375 0.31 +0.8
937,743 - IAI46_04375 0.31 +0.5
937,743 - IAI46_04375 0.31 +1.0
937,824 + IAI46_04375 0.44 +0.5
937,825 - IAI46_04375 0.44 +0.4
937,883 + IAI46_04375 0.53 +0.4
937,908 + IAI46_04375 0.57 -0.3
937,909 - IAI46_04375 0.57 +0.2
937,909 - IAI46_04375 0.57 +1.3
937,909 - IAI46_04375 0.57 +0.3
937,909 - IAI46_04375 0.57 +1.1
938,071 - IAI46_04375 0.83 -0.8
938,114 + IAI46_04375 0.90 +0.4
938,193 + +1.2
938,193 + +0.1
938,194 - -0.0
938,194 - -0.2
938,194 - -0.0
938,194 - -2.9
938,194 - -0.4
938,195 + +1.7
938,196 - -0.1
938,196 - -0.6
938,261 + IAI46_04380 0.13 +0.7
938,261 + IAI46_04380 0.13 +0.8
938,261 + IAI46_04380 0.13 +1.5
938,261 + IAI46_04380 0.13 +0.5
938,362 - IAI46_04380 0.30 +0.1
938,362 - IAI46_04380 0.30 +1.0

Or see this region's nucleotide sequence