Strain Fitness in Serratia liquefaciens MT49 around IAI46_04275

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04270 and IAI46_04275 overlap by 1 nucleotidesIAI46_04275 and IAI46_04280 overlap by 20 nucleotidesIAI46_04280 and IAI46_04285 overlap by 8 nucleotidesIAI46_04285 and IAI46_04290 are separated by 37 nucleotides IAI46_04270: IAI46_04270 - alanine--glyoxylate aminotransferase family protein, at 917,119 to 918,360 _04270 IAI46_04275: IAI46_04275 - allantoate amidohydrolase, at 918,360 to 919,634 _04275 IAI46_04280: IAI46_04280 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 919,615 to 920,115 _04280 IAI46_04285: IAI46_04285 - hydroxyisourate hydrolase, at 920,108 to 920,443 _04285 IAI46_04290: IAI46_04290 - purine permease, at 920,481 to 921,833 _04290 Position (kb) 918 919 920Strain fitness (log2 ratio) -2 -1 0 1at 917.607 kb on + strand, within IAI46_04270at 917.627 kb on + strand, within IAI46_04270at 917.627 kb on + strand, within IAI46_04270at 917.627 kb on + strand, within IAI46_04270at 917.759 kb on + strand, within IAI46_04270at 917.759 kb on + strand, within IAI46_04270at 917.759 kb on + strand, within IAI46_04270at 917.854 kb on + strand, within IAI46_04270at 917.863 kb on + strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.890 kb on + strand, within IAI46_04270at 917.891 kb on - strand, within IAI46_04270at 917.988 kb on + strand, within IAI46_04270at 918.226 kb on + strand, within IAI46_04270at 918.226 kb on + strand, within IAI46_04270at 918.237 kb on + strandat 918.340 kb on + strandat 918.446 kb on + strandat 918.447 kb on - strandat 918.471 kb on + strandat 918.472 kb on - strandat 918.610 kb on + strand, within IAI46_04275at 918.651 kb on + strand, within IAI46_04275at 918.652 kb on - strand, within IAI46_04275at 918.660 kb on - strand, within IAI46_04275at 918.660 kb on - strand, within IAI46_04275at 918.660 kb on - strand, within IAI46_04275at 918.836 kb on + strand, within IAI46_04275at 918.837 kb on - strand, within IAI46_04275at 918.929 kb on + strand, within IAI46_04275at 918.929 kb on + strand, within IAI46_04275at 918.939 kb on + strand, within IAI46_04275at 918.940 kb on - strand, within IAI46_04275at 919.044 kb on - strand, within IAI46_04275at 919.139 kb on - strand, within IAI46_04275at 919.280 kb on + strand, within IAI46_04275at 919.327 kb on + strand, within IAI46_04275at 919.328 kb on - strand, within IAI46_04275at 919.547 kb on - strandat 919.581 kb on + strandat 919.632 kb on + strandat 919.632 kb on + strandat 919.632 kb on + strandat 920.114 kb on - strandat 920.116 kb on + strandat 920.116 kb on + strandat 920.339 kb on + strand, within IAI46_04285at 920.339 kb on + strand, within IAI46_04285at 920.339 kb on + strand, within IAI46_04285at 920.339 kb on + strand, within IAI46_04285at 920.340 kb on - strand, within IAI46_04285at 920.420 kb on + strandat 920.441 kb on + strandat 920.442 kb on - strandat 920.476 kb on + strandat 920.476 kb on + strandat 920.476 kb on + strandat 920.476 kb on + strandat 920.477 kb on - strandat 920.477 kb on - strandat 920.477 kb on - strandat 920.477 kb on - strandat 920.480 kb on + strandat 920.480 kb on + strandat 920.480 kb on + strandat 920.480 kb on + strandat 920.480 kb on + strandat 920.480 kb on + strandat 920.480 kb on + strandat 920.480 kb on + strandat 920.481 kb on - strandat 920.481 kb on - strandat 920.481 kb on - strandat 920.481 kb on - strandat 920.574 kb on - strandat 920.574 kb on - strandat 920.574 kb on - strandat 920.586 kb on + strandat 920.586 kb on + strandat 920.586 kb on + strandat 920.586 kb on + strandat 920.586 kb on + strandat 920.586 kb on + strandat 920.586 kb on + strandat 920.587 kb on - strandat 920.587 kb on - strandat 920.587 kb on - strandat 920.587 kb on - strandat 920.587 kb on - strandat 920.587 kb on - strandat 920.587 kb on - strandat 920.600 kb on - strandat 920.600 kb on - strandat 920.600 kb on - strandat 920.617 kb on + strand, within IAI46_04290at 920.617 kb on + strand, within IAI46_04290at 920.618 kb on - strand, within IAI46_04290at 920.618 kb on - strand, within IAI46_04290at 920.618 kb on - strand, within IAI46_04290

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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917,607 + IAI46_04270 0.39 +0.5
917,627 + IAI46_04270 0.41 -0.0
917,627 + IAI46_04270 0.41 -0.1
917,627 + IAI46_04270 0.41 +0.4
917,759 + IAI46_04270 0.52 +0.3
917,759 + IAI46_04270 0.52 -1.0
917,759 + IAI46_04270 0.52 +1.1
917,854 + IAI46_04270 0.59 -1.1
917,863 + IAI46_04270 0.60 +0.2
917,864 - IAI46_04270 0.60 +0.2
917,864 - IAI46_04270 0.60 -0.5
917,864 - IAI46_04270 0.60 -0.0
917,864 - IAI46_04270 0.60 -1.8
917,890 + IAI46_04270 0.62 -0.1
917,891 - IAI46_04270 0.62 -0.8
917,988 + IAI46_04270 0.70 -0.1
918,226 + IAI46_04270 0.89 +0.3
918,226 + IAI46_04270 0.89 +0.1
918,237 + +0.4
918,340 + -1.1
918,446 + +0.7
918,447 - -2.1
918,471 + -0.5
918,472 - +0.4
918,610 + IAI46_04275 0.20 +0.5
918,651 + IAI46_04275 0.23 -0.2
918,652 - IAI46_04275 0.23 +0.6
918,660 - IAI46_04275 0.24 -0.5
918,660 - IAI46_04275 0.24 -0.6
918,660 - IAI46_04275 0.24 -0.0
918,836 + IAI46_04275 0.37 +0.5
918,837 - IAI46_04275 0.37 -0.1
918,929 + IAI46_04275 0.45 -0.3
918,929 + IAI46_04275 0.45 -0.7
918,939 + IAI46_04275 0.45 -0.4
918,940 - IAI46_04275 0.45 +0.5
919,044 - IAI46_04275 0.54 +0.9
919,139 - IAI46_04275 0.61 -0.2
919,280 + IAI46_04275 0.72 +0.5
919,327 + IAI46_04275 0.76 +0.6
919,328 - IAI46_04275 0.76 -0.1
919,547 - +1.1
919,581 + +0.1
919,632 + +1.0
919,632 + -0.3
919,632 + +0.1
920,114 - +1.1
920,116 + -0.2
920,116 + -0.2
920,339 + IAI46_04285 0.69 +0.5
920,339 + IAI46_04285 0.69 -1.0
920,339 + IAI46_04285 0.69 +0.7
920,339 + IAI46_04285 0.69 +0.3
920,340 - IAI46_04285 0.69 +0.8
920,420 + +0.1
920,441 + +0.3
920,442 - -0.1
920,476 + +0.5
920,476 + +0.6
920,476 + -0.3
920,476 + -0.3
920,477 - -1.4
920,477 - -0.0
920,477 - -0.1
920,477 - -0.8
920,480 + +0.3
920,480 + -0.0
920,480 + +0.0
920,480 + -0.3
920,480 + +0.1
920,480 + +0.6
920,480 + +0.2
920,480 + +0.7
920,481 - +0.8
920,481 - +0.8
920,481 - +0.1
920,481 - +0.1
920,574 - +0.6
920,574 - -0.2
920,574 - -0.2
920,586 + -0.1
920,586 + -0.4
920,586 + +0.2
920,586 + +0.5
920,586 + -0.8
920,586 + -1.0
920,586 + -0.1
920,587 - +0.3
920,587 - -0.3
920,587 - +0.7
920,587 - +0.3
920,587 - +0.2
920,587 - -0.4
920,587 - +0.6
920,600 - +0.6
920,600 - +0.7
920,600 - -0.6
920,617 + IAI46_04290 0.10 +0.5
920,617 + IAI46_04290 0.10 +0.3
920,618 - IAI46_04290 0.10 -0.6
920,618 - IAI46_04290 0.10 +1.4
920,618 - IAI46_04290 0.10 +1.0

Or see this region's nucleotide sequence