Strain Fitness in Serratia liquefaciens MT49 around IAI46_03360

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03355 and IAI46_03360 are separated by 89 nucleotidesIAI46_03360 and IAI46_03365 are separated by 681 nucleotides IAI46_03355: IAI46_03355 - 2-isopropylmalate synthase, at 725,050 to 726,624 _03355 IAI46_03360: IAI46_03360 - leu operon leader peptide, at 726,714 to 726,797 _03360 IAI46_03365: IAI46_03365 - transcriptional regulator LeuO, at 727,479 to 728,426 _03365 Position (kb) 726 727Strain fitness (log2 ratio) -2 -1 0 1 2at 725.854 kb on + strand, within IAI46_03355at 725.854 kb on + strand, within IAI46_03355at 725.854 kb on + strand, within IAI46_03355at 726.030 kb on + strand, within IAI46_03355at 726.030 kb on + strand, within IAI46_03355at 726.030 kb on + strand, within IAI46_03355at 726.031 kb on - strand, within IAI46_03355at 726.062 kb on + strand, within IAI46_03355at 726.062 kb on + strand, within IAI46_03355at 726.063 kb on - strand, within IAI46_03355at 726.075 kb on + strand, within IAI46_03355at 726.076 kb on - strand, within IAI46_03355at 726.076 kb on - strand, within IAI46_03355at 726.076 kb on - strand, within IAI46_03355at 726.078 kb on + strand, within IAI46_03355at 726.218 kb on - strand, within IAI46_03355at 726.230 kb on + strand, within IAI46_03355at 726.231 kb on - strand, within IAI46_03355at 726.231 kb on - strand, within IAI46_03355at 726.231 kb on - strand, within IAI46_03355at 726.235 kb on - strand, within IAI46_03355at 726.256 kb on + strand, within IAI46_03355at 726.256 kb on + strand, within IAI46_03355at 726.256 kb on + strand, within IAI46_03355at 726.257 kb on - strand, within IAI46_03355at 726.257 kb on - strand, within IAI46_03355at 726.306 kb on + strand, within IAI46_03355at 726.306 kb on + strand, within IAI46_03355at 726.306 kb on + strand, within IAI46_03355at 726.390 kb on + strand, within IAI46_03355at 726.394 kb on + strand, within IAI46_03355at 726.395 kb on - strand, within IAI46_03355at 726.490 kb on + strandat 726.491 kb on - strandat 726.491 kb on - strandat 726.491 kb on - strandat 726.646 kb on + strandat 726.657 kb on - strandat 726.697 kb on + strandat 726.761 kb on + strand, within IAI46_03360at 726.766 kb on - strand, within IAI46_03360at 726.766 kb on - strand, within IAI46_03360at 726.774 kb on + strand, within IAI46_03360at 726.775 kb on - strand, within IAI46_03360at 726.784 kb on + strand, within IAI46_03360at 726.784 kb on + strand, within IAI46_03360at 726.784 kb on + strand, within IAI46_03360at 726.784 kb on + strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.832 kb on - strandat 726.852 kb on + strandat 726.853 kb on - strandat 726.856 kb on + strandat 726.885 kb on - strandat 726.927 kb on + strandat 726.928 kb on - strandat 726.985 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.006 kb on - strandat 727.006 kb on - strandat 727.006 kb on - strandat 727.006 kb on - strandat 727.006 kb on - strandat 727.006 kb on - strandat 727.007 kb on + strandat 727.008 kb on - strandat 727.102 kb on - strandat 727.132 kb on - strandat 727.148 kb on - strandat 727.154 kb on - strandat 727.160 kb on - strandat 727.171 kb on + strandat 727.248 kb on + strandat 727.297 kb on + strandat 727.337 kb on + strandat 727.339 kb on + strandat 727.436 kb on + strandat 727.466 kb on - strandat 727.478 kb on + strandat 727.502 kb on + strandat 727.534 kb on + strandat 727.671 kb on - strand, within IAI46_03365at 727.703 kb on + strand, within IAI46_03365at 727.704 kb on - strand, within IAI46_03365at 727.704 kb on - strand, within IAI46_03365

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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725,854 + IAI46_03355 0.51 -0.4
725,854 + IAI46_03355 0.51 -0.1
725,854 + IAI46_03355 0.51 -0.1
726,030 + IAI46_03355 0.62 +0.1
726,030 + IAI46_03355 0.62 -0.1
726,030 + IAI46_03355 0.62 +0.3
726,031 - IAI46_03355 0.62 +0.0
726,062 + IAI46_03355 0.64 -0.1
726,062 + IAI46_03355 0.64 -0.6
726,063 - IAI46_03355 0.64 +0.1
726,075 + IAI46_03355 0.65 +0.9
726,076 - IAI46_03355 0.65 -0.9
726,076 - IAI46_03355 0.65 +0.2
726,076 - IAI46_03355 0.65 +0.0
726,078 + IAI46_03355 0.65 -0.5
726,218 - IAI46_03355 0.74 -0.5
726,230 + IAI46_03355 0.75 -0.8
726,231 - IAI46_03355 0.75 -0.2
726,231 - IAI46_03355 0.75 -0.7
726,231 - IAI46_03355 0.75 -1.0
726,235 - IAI46_03355 0.75 -1.0
726,256 + IAI46_03355 0.77 -1.9
726,256 + IAI46_03355 0.77 -1.0
726,256 + IAI46_03355 0.77 -1.1
726,257 - IAI46_03355 0.77 -0.4
726,257 - IAI46_03355 0.77 -0.2
726,306 + IAI46_03355 0.80 +0.3
726,306 + IAI46_03355 0.80 +0.4
726,306 + IAI46_03355 0.80 +0.4
726,390 + IAI46_03355 0.85 +0.0
726,394 + IAI46_03355 0.85 -0.4
726,395 - IAI46_03355 0.85 -0.5
726,490 + +0.1
726,491 - -0.7
726,491 - +0.1
726,491 - -0.1
726,646 + +1.1
726,657 - +0.6
726,697 + -0.7
726,761 + IAI46_03360 0.56 -0.7
726,766 - IAI46_03360 0.62 -0.7
726,766 - IAI46_03360 0.62 -0.5
726,774 + IAI46_03360 0.71 +0.6
726,775 - IAI46_03360 0.73 +0.6
726,784 + IAI46_03360 0.83 +0.6
726,784 + IAI46_03360 0.83 -0.2
726,784 + IAI46_03360 0.83 +2.1
726,784 + IAI46_03360 0.83 -0.6
726,785 - IAI46_03360 0.85 +0.9
726,785 - IAI46_03360 0.85 -0.3
726,785 - IAI46_03360 0.85 -0.2
726,785 - IAI46_03360 0.85 -0.2
726,785 - IAI46_03360 0.85 +0.1
726,785 - IAI46_03360 0.85 +0.6
726,785 - IAI46_03360 0.85 +0.3
726,832 - -1.8
726,852 + +0.1
726,853 - -0.2
726,856 + +0.8
726,885 - +0.5
726,927 + -0.2
726,928 - +0.4
726,985 + +0.3
727,003 + +0.1
727,003 + +0.6
727,004 - -0.0
727,004 - -0.2
727,006 - +0.0
727,006 - +1.7
727,006 - -0.6
727,006 - -0.0
727,006 - +0.4
727,006 - +2.1
727,007 + +0.3
727,008 - +0.3
727,102 - +0.8
727,132 - -0.6
727,148 - -0.7
727,154 - +0.6
727,160 - +0.6
727,171 + +0.7
727,248 + -1.1
727,297 + -0.7
727,337 + +0.3
727,339 + +1.0
727,436 + +0.2
727,466 - -0.3
727,478 + -0.4
727,502 + +0.3
727,534 + +0.2
727,671 - IAI46_03365 0.20 +0.4
727,703 + IAI46_03365 0.24 +2.6
727,704 - IAI46_03365 0.24 +0.5
727,704 - IAI46_03365 0.24 -0.7

Or see this region's nucleotide sequence