Strain Fitness in Serratia liquefaciens MT49 around IAI46_03335

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03330 and IAI46_03335 are separated by 141 nucleotidesIAI46_03335 and IAI46_03340 are separated by 134 nucleotidesIAI46_03340 and IAI46_03345 are separated by 9 nucleotides IAI46_03330: IAI46_03330 - MFS transporter, at 718,988 to 720,193 _03330 IAI46_03335: IAI46_03335 - DASS family sodium-coupled anion symporter, at 720,335 to 721,807 _03335 IAI46_03340: IAI46_03340 - 3-isopropylmalate dehydratase small subunit, at 721,942 to 722,544 _03340 IAI46_03345: IAI46_03345 - 3-isopropylmalate dehydratase large subunit, at 722,554 to 723,954 _03345 Position (kb) 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2at 719.378 kb on + strand, within IAI46_03330at 719.378 kb on + strand, within IAI46_03330at 719.473 kb on + strand, within IAI46_03330at 719.473 kb on + strand, within IAI46_03330at 719.498 kb on - strand, within IAI46_03330at 719.498 kb on - strand, within IAI46_03330at 719.602 kb on + strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.714 kb on + strand, within IAI46_03330at 719.714 kb on + strand, within IAI46_03330at 719.721 kb on + strand, within IAI46_03330at 719.722 kb on - strand, within IAI46_03330at 719.735 kb on + strand, within IAI46_03330at 719.735 kb on + strand, within IAI46_03330at 719.736 kb on - strand, within IAI46_03330at 719.736 kb on - strand, within IAI46_03330at 719.736 kb on - strand, within IAI46_03330at 719.737 kb on + strand, within IAI46_03330at 719.738 kb on - strand, within IAI46_03330at 719.835 kb on - strand, within IAI46_03330at 719.835 kb on - strand, within IAI46_03330at 719.835 kb on - strand, within IAI46_03330at 719.860 kb on + strand, within IAI46_03330at 719.860 kb on + strand, within IAI46_03330at 719.860 kb on + strand, within IAI46_03330at 719.860 kb on + strand, within IAI46_03330at 719.860 kb on + strand, within IAI46_03330at 719.861 kb on - strand, within IAI46_03330at 719.861 kb on - strand, within IAI46_03330at 719.861 kb on - strand, within IAI46_03330at 719.861 kb on - strand, within IAI46_03330at 719.898 kb on - strand, within IAI46_03330at 719.940 kb on + strand, within IAI46_03330at 719.941 kb on - strand, within IAI46_03330at 719.943 kb on + strand, within IAI46_03330at 719.943 kb on + strand, within IAI46_03330at 719.943 kb on + strand, within IAI46_03330at 719.943 kb on + strand, within IAI46_03330at 719.944 kb on - strand, within IAI46_03330at 719.944 kb on - strand, within IAI46_03330at 719.944 kb on - strand, within IAI46_03330at 719.944 kb on - strand, within IAI46_03330at 719.944 kb on - strand, within IAI46_03330at 719.997 kb on - strand, within IAI46_03330at 720.046 kb on + strand, within IAI46_03330at 720.047 kb on - strand, within IAI46_03330at 720.055 kb on + strand, within IAI46_03330at 720.055 kb on + strand, within IAI46_03330at 720.055 kb on + strand, within IAI46_03330at 720.055 kb on + strand, within IAI46_03330at 720.056 kb on - strand, within IAI46_03330at 720.056 kb on - strand, within IAI46_03330at 720.128 kb on + strandat 720.129 kb on - strandat 720.197 kb on + strandat 720.198 kb on - strandat 720.211 kb on - strandat 720.254 kb on - strandat 720.341 kb on - strandat 720.341 kb on - strandat 720.345 kb on + strandat 720.345 kb on + strandat 720.346 kb on - strandat 720.346 kb on - strandat 720.397 kb on + strandat 720.398 kb on - strandat 720.398 kb on - strandat 720.398 kb on - strandat 720.398 kb on - strandat 720.473 kb on - strandat 720.473 kb on - strandat 720.556 kb on + strand, within IAI46_03335at 720.652 kb on + strand, within IAI46_03335at 720.653 kb on - strand, within IAI46_03335at 720.693 kb on - strand, within IAI46_03335at 720.693 kb on - strand, within IAI46_03335at 720.697 kb on + strand, within IAI46_03335at 720.697 kb on + strand, within IAI46_03335at 720.735 kb on - strand, within IAI46_03335at 720.806 kb on - strand, within IAI46_03335at 720.903 kb on - strand, within IAI46_03335at 720.903 kb on - strand, within IAI46_03335at 720.903 kb on - strand, within IAI46_03335at 720.934 kb on + strand, within IAI46_03335at 720.934 kb on + strand, within IAI46_03335at 721.064 kb on - strand, within IAI46_03335at 721.080 kb on - strand, within IAI46_03335at 721.088 kb on + strand, within IAI46_03335at 721.089 kb on - strand, within IAI46_03335at 721.203 kb on + strand, within IAI46_03335at 721.354 kb on + strand, within IAI46_03335at 721.417 kb on + strand, within IAI46_03335at 721.417 kb on + strand, within IAI46_03335at 721.417 kb on + strand, within IAI46_03335at 721.417 kb on + strand, within IAI46_03335at 721.417 kb on + strand, within IAI46_03335at 721.418 kb on - strand, within IAI46_03335at 721.418 kb on - strand, within IAI46_03335at 721.456 kb on + strand, within IAI46_03335at 721.457 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.509 kb on - strand, within IAI46_03335at 721.517 kb on + strand, within IAI46_03335at 721.518 kb on - strand, within IAI46_03335at 721.658 kb on + strand, within IAI46_03335at 721.659 kb on - strand, within IAI46_03335at 721.659 kb on - strand, within IAI46_03335at 721.698 kb on - strandat 721.767 kb on + strandat 721.767 kb on + strandat 721.768 kb on - strandat 721.818 kb on - strandat 721.847 kb on - strandat 721.865 kb on + strandat 721.866 kb on - strandat 721.873 kb on + strandat 721.874 kb on - strandat 721.890 kb on - strandat 721.890 kb on - strandat 721.890 kb on - strandat 721.893 kb on + strandat 721.920 kb on + strandat 721.921 kb on - strandat 721.929 kb on + strandat 721.929 kb on + strandat 721.929 kb on + strandat 721.930 kb on - strandat 721.974 kb on - strandat 721.984 kb on - strandat 722.217 kb on - strand, within IAI46_03340at 722.253 kb on + strand, within IAI46_03340at 722.523 kb on + strandat 722.523 kb on + strandat 722.523 kb on + strandat 722.523 kb on + strandat 722.524 kb on - strandat 722.524 kb on - strandat 722.532 kb on + strandat 722.533 kb on - strandat 722.556 kb on - strandat 722.562 kb on + strandat 722.631 kb on + strandat 722.632 kb on - strandat 722.632 kb on - strandat 722.632 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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719,378 + IAI46_03330 0.32 +0.7
719,378 + IAI46_03330 0.32 +0.3
719,473 + IAI46_03330 0.40 -0.0
719,473 + IAI46_03330 0.40 +0.2
719,498 - IAI46_03330 0.42 -0.7
719,498 - IAI46_03330 0.42 -0.2
719,602 + IAI46_03330 0.51 -0.3
719,708 - IAI46_03330 0.60 +0.4
719,708 - IAI46_03330 0.60 +0.5
719,708 - IAI46_03330 0.60 -0.6
719,708 - IAI46_03330 0.60 -0.7
719,714 + IAI46_03330 0.60 -0.2
719,714 + IAI46_03330 0.60 -0.3
719,721 + IAI46_03330 0.61 -0.5
719,722 - IAI46_03330 0.61 +0.5
719,735 + IAI46_03330 0.62 -0.0
719,735 + IAI46_03330 0.62 +0.3
719,736 - IAI46_03330 0.62 +0.8
719,736 - IAI46_03330 0.62 -0.1
719,736 - IAI46_03330 0.62 +0.1
719,737 + IAI46_03330 0.62 -0.4
719,738 - IAI46_03330 0.62 -0.6
719,835 - IAI46_03330 0.70 -0.4
719,835 - IAI46_03330 0.70 +0.8
719,835 - IAI46_03330 0.70 -0.2
719,860 + IAI46_03330 0.72 -0.8
719,860 + IAI46_03330 0.72 +0.3
719,860 + IAI46_03330 0.72 -1.4
719,860 + IAI46_03330 0.72 -0.7
719,860 + IAI46_03330 0.72 -0.1
719,861 - IAI46_03330 0.72 -0.5
719,861 - IAI46_03330 0.72 -0.4
719,861 - IAI46_03330 0.72 +1.0
719,861 - IAI46_03330 0.72 -0.2
719,898 - IAI46_03330 0.75 -0.2
719,940 + IAI46_03330 0.79 +2.1
719,941 - IAI46_03330 0.79 -1.2
719,943 + IAI46_03330 0.79 -0.1
719,943 + IAI46_03330 0.79 +1.4
719,943 + IAI46_03330 0.79 +0.3
719,943 + IAI46_03330 0.79 +0.0
719,944 - IAI46_03330 0.79 +0.3
719,944 - IAI46_03330 0.79 +1.1
719,944 - IAI46_03330 0.79 +0.6
719,944 - IAI46_03330 0.79 +0.6
719,944 - IAI46_03330 0.79 +0.5
719,997 - IAI46_03330 0.84 +0.2
720,046 + IAI46_03330 0.88 +0.8
720,047 - IAI46_03330 0.88 -0.2
720,055 + IAI46_03330 0.88 -0.3
720,055 + IAI46_03330 0.88 +0.6
720,055 + IAI46_03330 0.88 -0.5
720,055 + IAI46_03330 0.88 -0.1
720,056 - IAI46_03330 0.89 +0.8
720,056 - IAI46_03330 0.89 -0.2
720,128 + +0.2
720,129 - +0.4
720,197 + +0.2
720,198 - -0.3
720,211 - +0.6
720,254 - -0.5
720,341 - +1.1
720,341 - +1.1
720,345 + -0.2
720,345 + +0.7
720,346 - +0.3
720,346 - -0.4
720,397 + +0.2
720,398 - -2.0
720,398 - -0.4
720,398 - -0.9
720,398 - +0.9
720,473 - -1.2
720,473 - -0.0
720,556 + IAI46_03335 0.15 +0.7
720,652 + IAI46_03335 0.22 +0.5
720,653 - IAI46_03335 0.22 -1.9
720,693 - IAI46_03335 0.24 +0.4
720,693 - IAI46_03335 0.24 +0.2
720,697 + IAI46_03335 0.25 +0.1
720,697 + IAI46_03335 0.25 +1.7
720,735 - IAI46_03335 0.27 +0.1
720,806 - IAI46_03335 0.32 -0.4
720,903 - IAI46_03335 0.39 +0.4
720,903 - IAI46_03335 0.39 +1.3
720,903 - IAI46_03335 0.39 -0.1
720,934 + IAI46_03335 0.41 -0.1
720,934 + IAI46_03335 0.41 +0.4
721,064 - IAI46_03335 0.49 +0.8
721,080 - IAI46_03335 0.51 -0.6
721,088 + IAI46_03335 0.51 -2.4
721,089 - IAI46_03335 0.51 -0.7
721,203 + IAI46_03335 0.59 +0.2
721,354 + IAI46_03335 0.69 +0.0
721,417 + IAI46_03335 0.73 -0.5
721,417 + IAI46_03335 0.73 -0.6
721,417 + IAI46_03335 0.73 +0.4
721,417 + IAI46_03335 0.73 -0.1
721,417 + IAI46_03335 0.73 +0.3
721,418 - IAI46_03335 0.74 +0.9
721,418 - IAI46_03335 0.74 +0.6
721,456 + IAI46_03335 0.76 +0.2
721,457 - IAI46_03335 0.76 -0.3
721,503 - IAI46_03335 0.79 -0.4
721,503 - IAI46_03335 0.79 +0.2
721,503 - IAI46_03335 0.79 +0.3
721,503 - IAI46_03335 0.79 +0.8
721,503 - IAI46_03335 0.79 +0.3
721,503 - IAI46_03335 0.79 +0.1
721,509 - IAI46_03335 0.80 +0.2
721,517 + IAI46_03335 0.80 +0.7
721,518 - IAI46_03335 0.80 +2.0
721,658 + IAI46_03335 0.90 -0.0
721,659 - IAI46_03335 0.90 +0.9
721,659 - IAI46_03335 0.90 +0.8
721,698 - +0.7
721,767 + +0.0
721,767 + -0.4
721,768 - +0.7
721,818 - -1.1
721,847 - +0.1
721,865 + +0.5
721,866 - +0.6
721,873 + -0.3
721,874 - -0.5
721,890 - -0.3
721,890 - -0.4
721,890 - -0.3
721,893 + -1.8
721,920 + -0.3
721,921 - -1.2
721,929 + +0.8
721,929 + -0.3
721,929 + -0.1
721,930 - +0.2
721,974 - -0.4
721,984 - +0.2
722,217 - IAI46_03340 0.46 -0.4
722,253 + IAI46_03340 0.52 +0.7
722,523 + +0.3
722,523 + -0.4
722,523 + -0.2
722,523 + -0.1
722,524 - +1.0
722,524 - +0.5
722,532 + -1.3
722,533 - +1.3
722,556 - +0.7
722,562 + -0.3
722,631 + -1.0
722,632 - -0.9
722,632 - -0.4
722,632 - +0.6

Or see this region's nucleotide sequence