Strain Fitness in Serratia liquefaciens MT49 around IAI46_03210

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03205 and IAI46_03210 are separated by 43 nucleotidesIAI46_03210 and IAI46_03215 are separated by 129 nucleotidesIAI46_03215 and IAI46_03220 overlap by 4 nucleotides IAI46_03205: IAI46_03205 - glutathione-regulated potassium-efflux system protein KefC, at 688,989 to 690,842 _03205 IAI46_03210: IAI46_03210 - LysE family translocator, at 690,886 to 691,500 _03210 IAI46_03215: IAI46_03215 - threonine/serine exporter ThrE family protein, at 691,630 to 692,430 _03215 IAI46_03220: IAI46_03220 - threonine/serine exporter, at 692,427 to 692,891 _03220 Position (kb) 690 691 692Strain fitness (log2 ratio) -2 -1 0 1 2at 689.900 kb on + strand, within IAI46_03205at 689.901 kb on - strand, within IAI46_03205at 690.043 kb on + strand, within IAI46_03205at 690.229 kb on + strand, within IAI46_03205at 690.241 kb on + strand, within IAI46_03205at 690.242 kb on - strand, within IAI46_03205at 690.245 kb on - strand, within IAI46_03205at 690.259 kb on + strand, within IAI46_03205at 690.259 kb on + strand, within IAI46_03205at 690.260 kb on - strand, within IAI46_03205at 690.260 kb on - strand, within IAI46_03205at 690.263 kb on + strand, within IAI46_03205at 690.263 kb on + strand, within IAI46_03205at 690.263 kb on + strand, within IAI46_03205at 690.263 kb on + strand, within IAI46_03205at 690.264 kb on - strand, within IAI46_03205at 690.264 kb on - strand, within IAI46_03205at 690.264 kb on - strand, within IAI46_03205at 690.264 kb on - strand, within IAI46_03205at 690.293 kb on + strand, within IAI46_03205at 690.331 kb on - strand, within IAI46_03205at 690.331 kb on - strand, within IAI46_03205at 690.331 kb on - strand, within IAI46_03205at 690.518 kb on - strand, within IAI46_03205at 690.626 kb on + strand, within IAI46_03205at 690.627 kb on - strand, within IAI46_03205at 690.639 kb on + strand, within IAI46_03205at 690.640 kb on - strand, within IAI46_03205at 690.640 kb on - strand, within IAI46_03205at 690.641 kb on + strand, within IAI46_03205at 690.642 kb on - strand, within IAI46_03205at 690.672 kb on - strandat 690.675 kb on + strandat 690.840 kb on + strandat 690.887 kb on + strandat 690.888 kb on - strandat 690.939 kb on + strandat 690.939 kb on + strandat 691.038 kb on + strand, within IAI46_03210at 691.038 kb on + strand, within IAI46_03210at 691.039 kb on - strand, within IAI46_03210at 691.088 kb on - strand, within IAI46_03210at 691.099 kb on + strand, within IAI46_03210at 691.120 kb on - strand, within IAI46_03210at 691.120 kb on - strand, within IAI46_03210at 691.148 kb on + strand, within IAI46_03210at 691.148 kb on + strand, within IAI46_03210at 691.148 kb on + strand, within IAI46_03210at 691.148 kb on + strand, within IAI46_03210at 691.148 kb on + strand, within IAI46_03210at 691.148 kb on + strand, within IAI46_03210at 691.149 kb on - strand, within IAI46_03210at 691.157 kb on - strand, within IAI46_03210at 691.157 kb on - strand, within IAI46_03210at 691.157 kb on - strand, within IAI46_03210at 691.259 kb on + strand, within IAI46_03210at 691.260 kb on - strand, within IAI46_03210at 691.274 kb on + strand, within IAI46_03210at 691.337 kb on + strand, within IAI46_03210at 691.526 kb on + strandat 691.527 kb on - strandat 691.539 kb on - strandat 691.559 kb on + strandat 691.559 kb on + strandat 691.559 kb on + strandat 691.579 kb on + strandat 691.580 kb on - strandat 691.592 kb on + strandat 691.593 kb on - strandat 691.593 kb on - strandat 691.601 kb on + strandat 691.601 kb on + strandat 691.601 kb on + strandat 691.601 kb on + strandat 691.602 kb on - strandat 691.602 kb on - strandat 691.633 kb on + strandat 691.633 kb on + strandat 691.633 kb on + strandat 691.648 kb on - strandat 691.649 kb on + strandat 691.649 kb on + strandat 691.649 kb on + strandat 691.649 kb on + strandat 691.649 kb on + strandat 691.649 kb on + strandat 691.649 kb on + strandat 691.649 kb on + strandat 691.650 kb on - strandat 691.650 kb on - strandat 691.650 kb on - strandat 691.650 kb on - strandat 691.650 kb on - strandat 691.650 kb on - strandat 691.893 kb on + strand, within IAI46_03215at 691.894 kb on - strand, within IAI46_03215at 691.894 kb on - strand, within IAI46_03215at 691.926 kb on + strand, within IAI46_03215at 692.018 kb on + strand, within IAI46_03215at 692.019 kb on - strand, within IAI46_03215at 692.019 kb on - strand, within IAI46_03215at 692.019 kb on - strand, within IAI46_03215at 692.019 kb on - strand, within IAI46_03215at 692.094 kb on + strand, within IAI46_03215at 692.095 kb on - strand, within IAI46_03215at 692.113 kb on - strand, within IAI46_03215at 692.161 kb on - strand, within IAI46_03215at 692.261 kb on + strand, within IAI46_03215at 692.261 kb on + strand, within IAI46_03215at 692.262 kb on - strand, within IAI46_03215at 692.262 kb on - strand, within IAI46_03215at 692.293 kb on - strand, within IAI46_03215at 692.379 kb on + strandat 692.446 kb on + strandat 692.456 kb on + strandat 692.456 kb on + strandat 692.457 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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689,900 + IAI46_03205 0.49 +0.2
689,901 - IAI46_03205 0.49 +1.8
690,043 + IAI46_03205 0.57 +2.5
690,229 + IAI46_03205 0.67 -0.2
690,241 + IAI46_03205 0.68 +0.5
690,242 - IAI46_03205 0.68 +0.0
690,245 - IAI46_03205 0.68 -0.2
690,259 + IAI46_03205 0.69 -0.0
690,259 + IAI46_03205 0.69 -0.6
690,260 - IAI46_03205 0.69 +0.4
690,260 - IAI46_03205 0.69 +0.1
690,263 + IAI46_03205 0.69 +0.6
690,263 + IAI46_03205 0.69 -0.1
690,263 + IAI46_03205 0.69 +0.7
690,263 + IAI46_03205 0.69 +0.5
690,264 - IAI46_03205 0.69 +0.1
690,264 - IAI46_03205 0.69 -0.2
690,264 - IAI46_03205 0.69 +0.6
690,264 - IAI46_03205 0.69 -0.2
690,293 + IAI46_03205 0.70 +1.4
690,331 - IAI46_03205 0.72 +1.1
690,331 - IAI46_03205 0.72 +0.7
690,331 - IAI46_03205 0.72 +0.8
690,518 - IAI46_03205 0.82 -0.3
690,626 + IAI46_03205 0.88 +0.4
690,627 - IAI46_03205 0.88 -1.1
690,639 + IAI46_03205 0.89 -0.3
690,640 - IAI46_03205 0.89 -0.2
690,640 - IAI46_03205 0.89 +0.7
690,641 + IAI46_03205 0.89 -0.2
690,642 - IAI46_03205 0.89 +0.1
690,672 - +0.0
690,675 + -0.1
690,840 + +0.5
690,887 + -0.6
690,888 - -0.1
690,939 + +0.1
690,939 + +0.4
691,038 + IAI46_03210 0.25 -1.1
691,038 + IAI46_03210 0.25 +0.3
691,039 - IAI46_03210 0.25 +1.2
691,088 - IAI46_03210 0.33 +0.5
691,099 + IAI46_03210 0.35 +1.1
691,120 - IAI46_03210 0.38 -0.4
691,120 - IAI46_03210 0.38 +0.7
691,148 + IAI46_03210 0.43 -1.2
691,148 + IAI46_03210 0.43 +0.3
691,148 + IAI46_03210 0.43 +0.3
691,148 + IAI46_03210 0.43 -0.1
691,148 + IAI46_03210 0.43 -0.5
691,148 + IAI46_03210 0.43 +0.4
691,149 - IAI46_03210 0.43 +0.4
691,157 - IAI46_03210 0.44 +0.3
691,157 - IAI46_03210 0.44 -0.3
691,157 - IAI46_03210 0.44 +0.7
691,259 + IAI46_03210 0.61 +1.1
691,260 - IAI46_03210 0.61 -0.2
691,274 + IAI46_03210 0.63 +0.6
691,337 + IAI46_03210 0.73 -0.2
691,526 + +0.1
691,527 - +0.4
691,539 - +0.8
691,559 + +0.6
691,559 + +0.7
691,559 + +0.4
691,579 + -0.0
691,580 - +0.2
691,592 + -0.1
691,593 - -0.9
691,593 - -0.2
691,601 + -0.2
691,601 + +0.6
691,601 + +0.1
691,601 + -0.8
691,602 - +0.8
691,602 - +0.1
691,633 + +0.3
691,633 + +0.8
691,633 + +0.3
691,648 - +0.3
691,649 + -1.5
691,649 + +1.2
691,649 + +0.2
691,649 + +0.8
691,649 + -0.3
691,649 + +1.2
691,649 + -0.6
691,649 + +0.4
691,650 - +0.0
691,650 - -0.1
691,650 - +0.3
691,650 - +0.8
691,650 - -0.5
691,650 - +0.3
691,893 + IAI46_03215 0.33 +1.6
691,894 - IAI46_03215 0.33 +0.8
691,894 - IAI46_03215 0.33 -0.3
691,926 + IAI46_03215 0.37 -0.4
692,018 + IAI46_03215 0.48 +1.2
692,019 - IAI46_03215 0.49 +0.3
692,019 - IAI46_03215 0.49 -0.8
692,019 - IAI46_03215 0.49 -0.0
692,019 - IAI46_03215 0.49 -0.5
692,094 + IAI46_03215 0.58 +0.3
692,095 - IAI46_03215 0.58 +0.8
692,113 - IAI46_03215 0.60 +0.5
692,161 - IAI46_03215 0.66 +0.8
692,261 + IAI46_03215 0.79 +0.3
692,261 + IAI46_03215 0.79 -0.8
692,262 - IAI46_03215 0.79 +0.6
692,262 - IAI46_03215 0.79 +0.6
692,293 - IAI46_03215 0.83 +0.1
692,379 + -0.4
692,446 + -1.8
692,456 + -0.6
692,456 + +0.8
692,457 - -0.1

Or see this region's nucleotide sequence