Strain Fitness in Serratia liquefaciens MT49 around IAI46_03190

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03185 and IAI46_03190 are separated by 470 nucleotidesIAI46_03190 and IAI46_03195 are separated by 16 nucleotides IAI46_03185: IAI46_03185 - 4-hydroxy-tetrahydrodipicolinate reductase, at 682,573 to 683,394 _03185 IAI46_03190: IAI46_03190 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 683,865 to 685,013 _03190 IAI46_03195: IAI46_03195 - carbamoyl-phosphate synthase large subunit, at 685,030 to 688,254 _03195 Position (kb) 683 684 685 686Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 683.427 kb on + strandat 683.547 kb on + strandat 683.548 kb on - strandat 683.558 kb on + strandat 683.559 kb on - strandat 683.559 kb on - strandat 683.559 kb on - strandat 683.573 kb on - strandat 683.636 kb on + strandat 683.669 kb on - strandat 683.680 kb on + strandat 683.681 kb on - strandat 683.804 kb on + strandat 683.805 kb on - strandat 683.937 kb on - strandat 683.963 kb on + strandat 683.963 kb on + strandat 683.964 kb on - strandat 683.980 kb on - strand, within IAI46_03190at 684.029 kb on + strand, within IAI46_03190at 684.029 kb on + strand, within IAI46_03190at 684.030 kb on - strand, within IAI46_03190at 684.030 kb on - strand, within IAI46_03190at 684.030 kb on - strand, within IAI46_03190at 684.034 kb on - strand, within IAI46_03190at 684.034 kb on - strand, within IAI46_03190at 684.034 kb on - strand, within IAI46_03190at 684.042 kb on - strand, within IAI46_03190at 684.089 kb on - strand, within IAI46_03190at 684.089 kb on - strand, within IAI46_03190at 684.351 kb on - strand, within IAI46_03190at 684.366 kb on + strand, within IAI46_03190at 684.366 kb on + strand, within IAI46_03190at 684.366 kb on + strand, within IAI46_03190at 684.367 kb on - strand, within IAI46_03190at 684.367 kb on - strand, within IAI46_03190at 684.367 kb on - strand, within IAI46_03190at 684.367 kb on - strand, within IAI46_03190at 684.453 kb on + strand, within IAI46_03190at 684.460 kb on - strand, within IAI46_03190at 684.485 kb on + strand, within IAI46_03190at 684.486 kb on - strand, within IAI46_03190at 684.486 kb on - strand, within IAI46_03190at 684.570 kb on - strand, within IAI46_03190at 684.570 kb on - strand, within IAI46_03190at 684.613 kb on - strand, within IAI46_03190at 684.993 kb on + strandat 684.993 kb on + strandat 684.994 kb on - strandat 685.024 kb on + strandat 685.041 kb on + strandat 685.042 kb on - strandat 685.042 kb on - strandat 685.042 kb on - strandat 685.050 kb on - strandat 685.111 kb on + strandat 685.222 kb on + strandat 685.222 kb on + strandat 685.222 kb on + strandat 685.255 kb on - strandat 685.482 kb on + strand, within IAI46_03195at 685.482 kb on + strand, within IAI46_03195at 685.482 kb on + strand, within IAI46_03195at 685.483 kb on - strand, within IAI46_03195at 685.546 kb on - strand, within IAI46_03195at 685.676 kb on - strand, within IAI46_03195at 685.707 kb on + strand, within IAI46_03195at 685.708 kb on - strand, within IAI46_03195at 685.778 kb on + strand, within IAI46_03195at 685.778 kb on + strand, within IAI46_03195at 685.779 kb on - strand, within IAI46_03195at 685.810 kb on + strand, within IAI46_03195at 685.965 kb on + strand, within IAI46_03195at 685.966 kb on - strand, within IAI46_03195at 685.966 kb on - strand, within IAI46_03195at 685.966 kb on - strand, within IAI46_03195at 685.966 kb on - strand, within IAI46_03195

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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683,427 + +0.0
683,547 + +0.2
683,548 - +1.2
683,558 + -0.4
683,559 - +1.6
683,559 - -0.1
683,559 - -0.2
683,573 - +0.7
683,636 + -0.2
683,669 - -0.5
683,680 + -0.2
683,681 - -0.9
683,804 + -0.7
683,805 - -2.1
683,937 - +0.3
683,963 + -2.0
683,963 + -1.9
683,964 - -0.4
683,980 - IAI46_03190 0.10 -1.9
684,029 + IAI46_03190 0.14 -1.6
684,029 + IAI46_03190 0.14 -1.7
684,030 - IAI46_03190 0.14 -1.2
684,030 - IAI46_03190 0.14 -2.5
684,030 - IAI46_03190 0.14 -1.7
684,034 - IAI46_03190 0.15 -1.4
684,034 - IAI46_03190 0.15 -0.7
684,034 - IAI46_03190 0.15 -1.0
684,042 - IAI46_03190 0.15 -0.6
684,089 - IAI46_03190 0.19 -1.4
684,089 - IAI46_03190 0.19 -2.1
684,351 - IAI46_03190 0.42 -1.5
684,366 + IAI46_03190 0.44 -2.2
684,366 + IAI46_03190 0.44 -2.1
684,366 + IAI46_03190 0.44 -1.7
684,367 - IAI46_03190 0.44 -1.3
684,367 - IAI46_03190 0.44 -1.9
684,367 - IAI46_03190 0.44 -2.6
684,367 - IAI46_03190 0.44 -1.2
684,453 + IAI46_03190 0.51 -0.7
684,460 - IAI46_03190 0.52 -1.5
684,485 + IAI46_03190 0.54 -1.4
684,486 - IAI46_03190 0.54 -0.2
684,486 - IAI46_03190 0.54 -0.7
684,570 - IAI46_03190 0.61 -2.1
684,570 - IAI46_03190 0.61 -1.4
684,613 - IAI46_03190 0.65 -1.5
684,993 + +0.1
684,993 + -0.8
684,994 - +1.2
685,024 + -0.4
685,041 + -1.4
685,042 - -3.0
685,042 - -2.7
685,042 - -2.6
685,050 - -2.4
685,111 + -1.8
685,222 + -2.0
685,222 + -0.8
685,222 + -1.0
685,255 - -0.8
685,482 + IAI46_03195 0.14 +0.1
685,482 + IAI46_03195 0.14 -0.4
685,482 + IAI46_03195 0.14 -3.0
685,483 - IAI46_03195 0.14 -1.1
685,546 - IAI46_03195 0.16 -1.3
685,676 - IAI46_03195 0.20 -3.8
685,707 + IAI46_03195 0.21 -1.6
685,708 - IAI46_03195 0.21 -0.8
685,778 + IAI46_03195 0.23 -1.7
685,778 + IAI46_03195 0.23 -2.3
685,779 - IAI46_03195 0.23 -3.1
685,810 + IAI46_03195 0.24 +0.2
685,965 + IAI46_03195 0.29 -1.9
685,966 - IAI46_03195 0.29 -1.7
685,966 - IAI46_03195 0.29 -2.7
685,966 - IAI46_03195 0.29 -0.6
685,966 - IAI46_03195 0.29 -2.0

Or see this region's nucleotide sequence