Strain Fitness in Serratia liquefaciens MT49 around IAI46_03125

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03120 and IAI46_03125 are separated by 306 nucleotidesIAI46_03125 and IAI46_03130 are separated by 192 nucleotides IAI46_03120: IAI46_03120 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 667,764 to 668,717 _03120 IAI46_03125: IAI46_03125 - LysR family transcriptional regulator, at 669,024 to 669,947 _03125 IAI46_03130: IAI46_03130 - isocyanide synthase family protein, at 670,140 to 671,105 _03130 Position (kb) 669 670Strain fitness (log2 ratio) -1 0 1 2at 668.716 kb on - strandat 668.728 kb on + strandat 668.733 kb on - strandat 668.749 kb on + strandat 668.793 kb on + strandat 668.873 kb on - strandat 669.025 kb on + strandat 669.105 kb on + strandat 669.227 kb on + strand, within IAI46_03125at 669.284 kb on + strand, within IAI46_03125at 669.288 kb on + strand, within IAI46_03125at 669.416 kb on + strand, within IAI46_03125at 669.416 kb on + strand, within IAI46_03125at 669.416 kb on + strand, within IAI46_03125at 669.417 kb on - strand, within IAI46_03125at 669.433 kb on + strand, within IAI46_03125at 669.434 kb on - strand, within IAI46_03125at 669.434 kb on - strand, within IAI46_03125at 669.450 kb on + strand, within IAI46_03125at 669.450 kb on + strand, within IAI46_03125at 669.450 kb on + strand, within IAI46_03125at 669.450 kb on + strand, within IAI46_03125at 669.450 kb on + strand, within IAI46_03125at 669.450 kb on + strand, within IAI46_03125at 669.450 kb on + strand, within IAI46_03125at 669.451 kb on - strand, within IAI46_03125at 669.451 kb on - strand, within IAI46_03125at 669.451 kb on - strand, within IAI46_03125at 669.451 kb on - strand, within IAI46_03125at 669.451 kb on - strand, within IAI46_03125at 669.451 kb on - strand, within IAI46_03125at 669.453 kb on + strand, within IAI46_03125at 669.453 kb on + strand, within IAI46_03125at 669.453 kb on + strand, within IAI46_03125at 669.453 kb on + strand, within IAI46_03125at 669.454 kb on - strand, within IAI46_03125at 669.479 kb on + strand, within IAI46_03125at 669.530 kb on + strand, within IAI46_03125at 669.530 kb on + strand, within IAI46_03125at 669.531 kb on - strand, within IAI46_03125at 669.531 kb on - strand, within IAI46_03125at 669.629 kb on - strand, within IAI46_03125at 669.629 kb on - strand, within IAI46_03125at 669.801 kb on + strand, within IAI46_03125at 669.860 kb on + strandat 669.861 kb on - strandat 669.938 kb on + strandat 670.000 kb on + strandat 670.015 kb on + strandat 670.051 kb on - strandat 670.088 kb on + strandat 670.135 kb on + strandat 670.136 kb on - strandat 670.286 kb on + strand, within IAI46_03130at 670.316 kb on - strand, within IAI46_03130at 670.346 kb on + strand, within IAI46_03130at 670.350 kb on - strand, within IAI46_03130at 670.350 kb on - strand, within IAI46_03130at 670.350 kb on - strand, within IAI46_03130at 670.391 kb on - strand, within IAI46_03130at 670.407 kb on - strand, within IAI46_03130at 670.434 kb on + strand, within IAI46_03130at 670.434 kb on + strand, within IAI46_03130at 670.455 kb on - strand, within IAI46_03130at 670.455 kb on - strand, within IAI46_03130at 670.659 kb on + strand, within IAI46_03130at 670.747 kb on - strand, within IAI46_03130at 670.771 kb on - strand, within IAI46_03130at 670.924 kb on + strand, within IAI46_03130at 670.934 kb on + strand, within IAI46_03130at 670.934 kb on + strand, within IAI46_03130at 670.934 kb on + strand, within IAI46_03130at 670.934 kb on + strand, within IAI46_03130at 670.935 kb on - strand, within IAI46_03130at 670.935 kb on - strand, within IAI46_03130at 670.935 kb on - strand, within IAI46_03130at 670.935 kb on - strand, within IAI46_03130

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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668,716 - +1.7
668,728 + -0.4
668,733 - +0.8
668,749 + -0.5
668,793 + -0.3
668,873 - +0.2
669,025 + +0.0
669,105 + +0.2
669,227 + IAI46_03125 0.22 +1.8
669,284 + IAI46_03125 0.28 +1.2
669,288 + IAI46_03125 0.29 +0.6
669,416 + IAI46_03125 0.42 +0.1
669,416 + IAI46_03125 0.42 +0.4
669,416 + IAI46_03125 0.42 +0.7
669,417 - IAI46_03125 0.43 -0.5
669,433 + IAI46_03125 0.44 -0.4
669,434 - IAI46_03125 0.44 +0.9
669,434 - IAI46_03125 0.44 -1.1
669,450 + IAI46_03125 0.46 +0.4
669,450 + IAI46_03125 0.46 -0.1
669,450 + IAI46_03125 0.46 -0.4
669,450 + IAI46_03125 0.46 +0.6
669,450 + IAI46_03125 0.46 -1.2
669,450 + IAI46_03125 0.46 +0.1
669,450 + IAI46_03125 0.46 +0.3
669,451 - IAI46_03125 0.46 -0.3
669,451 - IAI46_03125 0.46 -0.0
669,451 - IAI46_03125 0.46 -0.0
669,451 - IAI46_03125 0.46 +0.3
669,451 - IAI46_03125 0.46 +0.2
669,451 - IAI46_03125 0.46 +0.5
669,453 + IAI46_03125 0.46 -0.1
669,453 + IAI46_03125 0.46 +0.4
669,453 + IAI46_03125 0.46 +0.6
669,453 + IAI46_03125 0.46 +0.7
669,454 - IAI46_03125 0.47 +0.1
669,479 + IAI46_03125 0.49 +0.1
669,530 + IAI46_03125 0.55 -0.1
669,530 + IAI46_03125 0.55 +0.3
669,531 - IAI46_03125 0.55 -0.2
669,531 - IAI46_03125 0.55 +0.5
669,629 - IAI46_03125 0.65 -0.5
669,629 - IAI46_03125 0.65 -0.1
669,801 + IAI46_03125 0.84 +0.3
669,860 + +0.9
669,861 - +0.1
669,938 + +0.4
670,000 + -0.1
670,015 + -0.4
670,051 - +1.7
670,088 + +0.9
670,135 + +0.2
670,136 - +0.5
670,286 + IAI46_03130 0.15 +0.1
670,316 - IAI46_03130 0.18 -0.5
670,346 + IAI46_03130 0.21 -0.6
670,350 - IAI46_03130 0.22 +0.0
670,350 - IAI46_03130 0.22 -1.1
670,350 - IAI46_03130 0.22 -0.8
670,391 - IAI46_03130 0.26 +0.2
670,407 - IAI46_03130 0.28 +0.5
670,434 + IAI46_03130 0.30 -0.1
670,434 + IAI46_03130 0.30 +0.4
670,455 - IAI46_03130 0.33 +0.6
670,455 - IAI46_03130 0.33 -0.2
670,659 + IAI46_03130 0.54 -0.1
670,747 - IAI46_03130 0.63 +0.6
670,771 - IAI46_03130 0.65 +0.3
670,924 + IAI46_03130 0.81 +0.4
670,934 + IAI46_03130 0.82 -1.6
670,934 + IAI46_03130 0.82 +0.3
670,934 + IAI46_03130 0.82 -0.0
670,934 + IAI46_03130 0.82 +1.8
670,935 - IAI46_03130 0.82 -0.0
670,935 - IAI46_03130 0.82 +0.4
670,935 - IAI46_03130 0.82 -1.2
670,935 - IAI46_03130 0.82 -1.1

Or see this region's nucleotide sequence