Strain Fitness in Serratia liquefaciens MT49 around IAI46_03050

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03040 and IAI46_03045 are separated by 63 nucleotidesIAI46_03045 and IAI46_03050 are separated by 105 nucleotidesIAI46_03050 and IAI46_03055 are separated by 381 nucleotides IAI46_03040: IAI46_03040 - threonine synthase, at 648,387 to 649,676 _03040 IAI46_03045: IAI46_03045 - peroxide stress protein YaaA, at 649,740 to 650,513 _03045 IAI46_03050: IAI46_03050 - sodium:alanine symporter family protein, at 650,619 to 652,043 _03050 IAI46_03055: IAI46_03055 - transaldolase, at 652,425 to 653,378 _03055 Position (kb) 650 651 652 653Strain fitness (log2 ratio) -2 -1 0 1 2 3at 649.649 kb on + strandat 649.650 kb on - strandat 649.650 kb on - strandat 649.691 kb on + strandat 649.691 kb on + strandat 649.692 kb on - strandat 649.859 kb on + strand, within IAI46_03045at 649.859 kb on + strand, within IAI46_03045at 649.859 kb on + strand, within IAI46_03045at 649.860 kb on - strand, within IAI46_03045at 649.860 kb on - strand, within IAI46_03045at 649.860 kb on - strand, within IAI46_03045at 649.862 kb on - strand, within IAI46_03045at 649.862 kb on - strand, within IAI46_03045at 649.895 kb on - strand, within IAI46_03045at 649.913 kb on - strand, within IAI46_03045at 649.913 kb on - strand, within IAI46_03045at 649.913 kb on - strand, within IAI46_03045at 649.990 kb on + strand, within IAI46_03045at 650.083 kb on + strand, within IAI46_03045at 650.170 kb on + strand, within IAI46_03045at 650.171 kb on - strand, within IAI46_03045at 650.252 kb on - strand, within IAI46_03045at 650.252 kb on - strand, within IAI46_03045at 650.421 kb on - strand, within IAI46_03045at 650.476 kb on + strandat 650.477 kb on - strandat 650.501 kb on + strandat 650.502 kb on - strandat 650.502 kb on - strandat 650.502 kb on - strandat 650.542 kb on + strandat 650.543 kb on - strandat 650.547 kb on + strandat 650.547 kb on + strandat 650.585 kb on - strandat 650.585 kb on - strandat 650.635 kb on - strandat 650.705 kb on + strandat 650.705 kb on + strandat 650.720 kb on - strandat 650.720 kb on - strandat 650.754 kb on + strandat 650.755 kb on - strandat 650.851 kb on - strand, within IAI46_03050at 650.922 kb on - strand, within IAI46_03050at 650.932 kb on + strand, within IAI46_03050at 650.933 kb on - strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.938 kb on + strand, within IAI46_03050at 650.939 kb on - strand, within IAI46_03050at 650.939 kb on - strand, within IAI46_03050at 650.939 kb on - strand, within IAI46_03050at 650.939 kb on - strand, within IAI46_03050at 650.939 kb on - strand, within IAI46_03050at 650.939 kb on - strand, within IAI46_03050at 650.939 kb on - strand, within IAI46_03050at 651.092 kb on + strand, within IAI46_03050at 651.126 kb on - strand, within IAI46_03050at 651.154 kb on + strand, within IAI46_03050at 651.154 kb on + strand, within IAI46_03050at 651.279 kb on - strand, within IAI46_03050at 651.284 kb on - strand, within IAI46_03050at 651.356 kb on + strand, within IAI46_03050at 651.356 kb on + strand, within IAI46_03050at 651.356 kb on + strand, within IAI46_03050at 651.357 kb on - strand, within IAI46_03050at 651.357 kb on - strand, within IAI46_03050at 651.365 kb on + strand, within IAI46_03050at 651.396 kb on + strand, within IAI46_03050at 651.396 kb on + strand, within IAI46_03050at 651.396 kb on + strand, within IAI46_03050at 651.397 kb on - strand, within IAI46_03050at 651.397 kb on - strand, within IAI46_03050at 651.400 kb on + strand, within IAI46_03050at 651.400 kb on + strand, within IAI46_03050at 651.400 kb on + strand, within IAI46_03050at 651.400 kb on + strand, within IAI46_03050at 651.483 kb on + strand, within IAI46_03050at 651.505 kb on + strand, within IAI46_03050at 651.505 kb on + strand, within IAI46_03050at 651.505 kb on + strand, within IAI46_03050at 651.505 kb on + strand, within IAI46_03050at 651.506 kb on - strand, within IAI46_03050at 651.506 kb on - strand, within IAI46_03050at 651.506 kb on - strand, within IAI46_03050at 651.506 kb on - strand, within IAI46_03050at 651.506 kb on - strand, within IAI46_03050at 651.551 kb on - strand, within IAI46_03050at 651.577 kb on - strand, within IAI46_03050at 651.577 kb on - strand, within IAI46_03050at 651.648 kb on - strand, within IAI46_03050at 651.649 kb on + strand, within IAI46_03050at 651.649 kb on + strand, within IAI46_03050at 651.649 kb on + strand, within IAI46_03050at 651.649 kb on + strand, within IAI46_03050at 651.650 kb on - strand, within IAI46_03050at 651.650 kb on - strand, within IAI46_03050at 651.650 kb on - strand, within IAI46_03050at 651.650 kb on - strand, within IAI46_03050at 651.650 kb on - strand, within IAI46_03050at 651.652 kb on + strand, within IAI46_03050at 651.652 kb on + strand, within IAI46_03050at 651.652 kb on + strand, within IAI46_03050at 651.652 kb on + strand, within IAI46_03050at 651.652 kb on + strand, within IAI46_03050at 651.652 kb on + strand, within IAI46_03050at 651.653 kb on - strand, within IAI46_03050at 651.653 kb on - strand, within IAI46_03050at 651.653 kb on - strand, within IAI46_03050at 651.653 kb on - strand, within IAI46_03050at 651.653 kb on - strand, within IAI46_03050at 651.653 kb on - strand, within IAI46_03050at 651.800 kb on + strand, within IAI46_03050at 651.818 kb on + strand, within IAI46_03050at 651.852 kb on + strand, within IAI46_03050at 651.852 kb on + strand, within IAI46_03050at 651.853 kb on - strand, within IAI46_03050at 651.853 kb on - strand, within IAI46_03050at 651.853 kb on - strand, within IAI46_03050at 651.917 kb on + strandat 651.917 kb on + strandat 651.917 kb on + strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.960 kb on - strandat 651.965 kb on - strandat 651.965 kb on - strandat 652.020 kb on + strandat 652.062 kb on - strandat 652.099 kb on + strandat 652.099 kb on + strandat 652.100 kb on - strandat 652.102 kb on - strandat 652.103 kb on + strandat 652.128 kb on + strandat 652.129 kb on - strandat 652.183 kb on + strandat 652.184 kb on - strandat 652.184 kb on - strandat 652.206 kb on + strandat 652.301 kb on - strandat 652.357 kb on + strandat 652.358 kb on - strandat 652.360 kb on + strandat 652.415 kb on + strandat 652.415 kb on + strandat 652.415 kb on + strandat 652.415 kb on + strandat 652.416 kb on - strandat 652.439 kb on - strandat 652.520 kb on + strandat 652.520 kb on + strandat 652.521 kb on - strand, within IAI46_03055at 652.566 kb on + strand, within IAI46_03055at 652.731 kb on + strand, within IAI46_03055at 652.732 kb on - strand, within IAI46_03055at 652.779 kb on + strand, within IAI46_03055at 652.780 kb on - strand, within IAI46_03055at 652.780 kb on - strand, within IAI46_03055at 652.883 kb on + strand, within IAI46_03055at 652.981 kb on - strand, within IAI46_03055at 652.981 kb on - strand, within IAI46_03055

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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649,649 + +0.4
649,650 - +0.2
649,650 - -0.7
649,691 + -0.4
649,691 + -0.1
649,692 - +0.5
649,859 + IAI46_03045 0.15 -0.1
649,859 + IAI46_03045 0.15 -0.3
649,859 + IAI46_03045 0.15 -1.8
649,860 - IAI46_03045 0.16 -0.2
649,860 - IAI46_03045 0.16 -1.2
649,860 - IAI46_03045 0.16 -0.1
649,862 - IAI46_03045 0.16 +3.2
649,862 - IAI46_03045 0.16 -1.0
649,895 - IAI46_03045 0.20 -0.1
649,913 - IAI46_03045 0.22 +0.6
649,913 - IAI46_03045 0.22 -0.3
649,913 - IAI46_03045 0.22 -0.2
649,990 + IAI46_03045 0.32 -0.4
650,083 + IAI46_03045 0.44 +0.0
650,170 + IAI46_03045 0.56 +0.8
650,171 - IAI46_03045 0.56 +0.3
650,252 - IAI46_03045 0.66 -0.6
650,252 - IAI46_03045 0.66 -0.1
650,421 - IAI46_03045 0.88 +0.3
650,476 + +0.3
650,477 - -0.1
650,501 + +1.3
650,502 - -0.0
650,502 - -0.2
650,502 - +0.9
650,542 + +1.1
650,543 - -0.4
650,547 + -1.6
650,547 + -1.5
650,585 - -0.6
650,585 - +0.1
650,635 - -0.3
650,705 + -0.8
650,705 + -1.3
650,720 - +0.4
650,720 - +1.4
650,754 + -0.6
650,755 - -0.1
650,851 - IAI46_03050 0.16 -0.2
650,922 - IAI46_03050 0.21 +0.7
650,932 + IAI46_03050 0.22 -0.5
650,933 - IAI46_03050 0.22 +0.9
650,938 + IAI46_03050 0.22 +2.2
650,938 + IAI46_03050 0.22 +0.9
650,938 + IAI46_03050 0.22 +0.1
650,938 + IAI46_03050 0.22 +0.6
650,938 + IAI46_03050 0.22 -0.1
650,938 + IAI46_03050 0.22 -0.8
650,938 + IAI46_03050 0.22 +1.0
650,938 + IAI46_03050 0.22 +0.2
650,938 + IAI46_03050 0.22 +0.3
650,938 + IAI46_03050 0.22 +0.3
650,938 + IAI46_03050 0.22 +1.1
650,938 + IAI46_03050 0.22 -0.3
650,938 + IAI46_03050 0.22 -0.1
650,938 + IAI46_03050 0.22 +0.5
650,938 + IAI46_03050 0.22 +0.2
650,938 + IAI46_03050 0.22 -0.3
650,938 + IAI46_03050 0.22 -0.3
650,939 - IAI46_03050 0.22 +0.4
650,939 - IAI46_03050 0.22 -0.2
650,939 - IAI46_03050 0.22 +0.6
650,939 - IAI46_03050 0.22 +0.4
650,939 - IAI46_03050 0.22 -0.5
650,939 - IAI46_03050 0.22 +0.4
650,939 - IAI46_03050 0.22 -0.0
651,092 + IAI46_03050 0.33 +0.3
651,126 - IAI46_03050 0.36 +0.4
651,154 + IAI46_03050 0.38 -0.2
651,154 + IAI46_03050 0.38 -0.7
651,279 - IAI46_03050 0.46 -0.6
651,284 - IAI46_03050 0.47 +0.5
651,356 + IAI46_03050 0.52 -1.3
651,356 + IAI46_03050 0.52 +0.1
651,356 + IAI46_03050 0.52 -0.4
651,357 - IAI46_03050 0.52 -0.5
651,357 - IAI46_03050 0.52 +2.0
651,365 + IAI46_03050 0.52 +1.5
651,396 + IAI46_03050 0.55 -0.6
651,396 + IAI46_03050 0.55 -0.0
651,396 + IAI46_03050 0.55 +0.8
651,397 - IAI46_03050 0.55 +0.3
651,397 - IAI46_03050 0.55 +0.1
651,400 + IAI46_03050 0.55 -1.0
651,400 + IAI46_03050 0.55 +0.7
651,400 + IAI46_03050 0.55 +0.7
651,400 + IAI46_03050 0.55 +1.9
651,483 + IAI46_03050 0.61 +0.5
651,505 + IAI46_03050 0.62 -0.4
651,505 + IAI46_03050 0.62 +0.3
651,505 + IAI46_03050 0.62 +0.5
651,505 + IAI46_03050 0.62 -1.4
651,506 - IAI46_03050 0.62 +0.3
651,506 - IAI46_03050 0.62 +0.2
651,506 - IAI46_03050 0.62 +0.4
651,506 - IAI46_03050 0.62 -0.2
651,506 - IAI46_03050 0.62 -0.8
651,551 - IAI46_03050 0.65 +0.7
651,577 - IAI46_03050 0.67 +0.3
651,577 - IAI46_03050 0.67 -1.3
651,648 - IAI46_03050 0.72 +0.3
651,649 + IAI46_03050 0.72 +0.3
651,649 + IAI46_03050 0.72 -0.6
651,649 + IAI46_03050 0.72 +0.1
651,649 + IAI46_03050 0.72 +0.1
651,650 - IAI46_03050 0.72 -0.4
651,650 - IAI46_03050 0.72 -0.1
651,650 - IAI46_03050 0.72 +0.9
651,650 - IAI46_03050 0.72 +0.4
651,650 - IAI46_03050 0.72 -0.5
651,652 + IAI46_03050 0.72 +1.1
651,652 + IAI46_03050 0.72 +0.9
651,652 + IAI46_03050 0.72 +0.1
651,652 + IAI46_03050 0.72 +0.1
651,652 + IAI46_03050 0.72 +0.5
651,652 + IAI46_03050 0.72 -0.6
651,653 - IAI46_03050 0.73 -0.5
651,653 - IAI46_03050 0.73 +0.5
651,653 - IAI46_03050 0.73 +0.3
651,653 - IAI46_03050 0.73 +0.2
651,653 - IAI46_03050 0.73 +1.4
651,653 - IAI46_03050 0.73 -0.8
651,800 + IAI46_03050 0.83 +0.6
651,818 + IAI46_03050 0.84 +0.1
651,852 + IAI46_03050 0.87 +2.8
651,852 + IAI46_03050 0.87 -0.8
651,853 - IAI46_03050 0.87 -0.2
651,853 - IAI46_03050 0.87 -0.0
651,853 - IAI46_03050 0.87 -0.1
651,917 + -2.1
651,917 + -0.1
651,917 + -0.2
651,918 - +0.2
651,918 - +0.4
651,918 - +1.4
651,918 - +0.7
651,918 - +0.2
651,918 - -0.1
651,960 - +0.7
651,965 - +0.2
651,965 - +0.0
652,020 + -0.5
652,062 - -0.8
652,099 + +1.2
652,099 + +0.2
652,100 - +0.4
652,102 - +0.9
652,103 + +1.4
652,128 + +0.1
652,129 - +0.6
652,183 + -0.1
652,184 - +0.2
652,184 - +0.6
652,206 + +0.1
652,301 - +0.2
652,357 + -0.3
652,358 - +0.3
652,360 + +0.7
652,415 + -0.1
652,415 + -0.1
652,415 + +0.7
652,415 + +1.4
652,416 - +0.0
652,439 - +0.1
652,520 + -0.2
652,520 + +0.6
652,521 - IAI46_03055 0.10 -0.1
652,566 + IAI46_03055 0.15 -0.2
652,731 + IAI46_03055 0.32 +0.1
652,732 - IAI46_03055 0.32 -0.4
652,779 + IAI46_03055 0.37 -0.2
652,780 - IAI46_03055 0.37 -0.2
652,780 - IAI46_03055 0.37 -1.1
652,883 + IAI46_03055 0.48 +1.5
652,981 - IAI46_03055 0.58 +0.2
652,981 - IAI46_03055 0.58 +0.2

Or see this region's nucleotide sequence