Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02985 and IAI46_02990 are separated by 55 nucleotides IAI46_02990 and IAI46_02995 are separated by 21 nucleotides IAI46_02995 and IAI46_03000 are separated by 111 nucleotides IAI46_03000 and IAI46_03005 overlap by 4 nucleotides
IAI46_02985: IAI46_02985 - murein transglycosylase, at 637,227 to 639,155
_02985
IAI46_02990: IAI46_02990 - trp operon repressor, at 639,211 to 639,540
_02990
IAI46_02995: IAI46_02995 - inosine/xanthosine triphosphatase, at 639,562 to 640,101
_02995
IAI46_03000: IAI46_03000 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB, at 640,213 to 640,860
_03000
IAI46_03005: IAI46_03005 - MDR efflux pump AcrAB transcriptional activator RobA, at 640,857 to 641,726
_03005
Position (kb) 639
640
641 Strain fitness (log2 ratio) -2
-1
0
1
2 at 638.706 kb on + strand, within IAI46_02985 at 638.707 kb on - strand, within IAI46_02985 at 638.720 kb on - strand, within IAI46_02985 at 638.810 kb on + strand, within IAI46_02985 at 638.810 kb on + strand, within IAI46_02985 at 638.810 kb on + strand, within IAI46_02985 at 638.810 kb on + strand, within IAI46_02985 at 638.810 kb on + strand, within IAI46_02985 at 638.811 kb on - strand, within IAI46_02985 at 638.828 kb on + strand, within IAI46_02985 at 638.828 kb on + strand, within IAI46_02985 at 638.879 kb on + strand, within IAI46_02985 at 638.895 kb on + strand, within IAI46_02985 at 638.895 kb on + strand, within IAI46_02985 at 638.896 kb on - strand, within IAI46_02985 at 638.904 kb on + strand, within IAI46_02985 at 638.904 kb on + strand, within IAI46_02985 at 638.904 kb on + strand, within IAI46_02985 at 638.904 kb on + strand, within IAI46_02985 at 638.905 kb on - strand, within IAI46_02985 at 638.905 kb on - strand, within IAI46_02985 at 638.905 kb on - strand, within IAI46_02985 at 638.905 kb on - strand, within IAI46_02985 at 638.910 kb on + strand, within IAI46_02985 at 638.952 kb on + strand, within IAI46_02985 at 638.978 kb on + strand at 638.978 kb on + strand at 638.978 kb on + strand at 638.979 kb on - strand at 639.057 kb on + strand at 639.070 kb on + strand at 639.071 kb on - strand at 639.071 kb on - strand at 639.071 kb on - strand at 639.078 kb on + strand at 639.091 kb on - strand at 639.097 kb on - strand at 639.173 kb on + strand at 639.173 kb on + strand at 639.174 kb on - strand at 639.183 kb on + strand at 639.190 kb on + strand at 639.197 kb on + strand at 639.197 kb on + strand at 639.221 kb on + strand at 639.221 kb on + strand at 639.222 kb on - strand at 639.538 kb on + strand at 639.539 kb on - strand at 639.564 kb on - strand at 639.582 kb on + strand at 639.642 kb on - strand, within IAI46_02995 at 639.679 kb on - strand, within IAI46_02995 at 639.821 kb on + strand, within IAI46_02995 at 639.855 kb on + strand, within IAI46_02995 at 639.856 kb on - strand, within IAI46_02995 at 639.856 kb on - strand, within IAI46_02995 at 639.856 kb on - strand, within IAI46_02995 at 640.053 kb on + strand at 640.054 kb on - strand at 640.059 kb on + strand at 640.077 kb on + strand at 640.077 kb on + strand at 640.077 kb on + strand at 640.078 kb on - strand at 640.078 kb on - strand at 640.078 kb on - strand at 640.097 kb on + strand at 640.097 kb on + strand at 640.097 kb on + strand at 640.098 kb on - strand at 640.098 kb on - strand at 640.101 kb on + strand at 640.102 kb on - strand at 640.111 kb on - strand at 640.120 kb on - strand at 640.124 kb on + strand at 640.124 kb on + strand at 640.124 kb on + strand at 640.125 kb on - strand at 640.125 kb on - strand at 640.125 kb on - strand at 640.125 kb on - strand at 640.132 kb on + strand at 640.133 kb on - strand at 640.139 kb on + strand at 640.140 kb on - strand at 640.197 kb on - strand at 640.197 kb on - strand at 640.197 kb on - strand at 640.198 kb on + strand at 640.223 kb on + strand at 640.223 kb on + strand at 640.223 kb on + strand at 640.224 kb on - strand at 640.225 kb on + strand at 640.225 kb on + strand at 640.226 kb on - strand at 640.226 kb on - strand at 640.226 kb on - strand at 640.368 kb on + strand, within IAI46_03000 at 640.368 kb on + strand, within IAI46_03000 at 640.369 kb on - strand, within IAI46_03000 at 640.437 kb on - strand, within IAI46_03000 at 640.543 kb on - strand, within IAI46_03000 at 640.879 kb on + strand at 640.879 kb on + strand at 640.880 kb on - strand at 640.996 kb on + strand, within IAI46_03005 at 641.009 kb on + strand, within IAI46_03005 at 641.010 kb on - strand, within IAI46_03005 at 641.056 kb on + strand, within IAI46_03005
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 638,706 + IAI46_02985 0.77 +0.5 638,707 - IAI46_02985 0.77 +0.6 638,720 - IAI46_02985 0.77 +1.1 638,810 + IAI46_02985 0.82 +0.2 638,810 + IAI46_02985 0.82 +1.1 638,810 + IAI46_02985 0.82 +1.2 638,810 + IAI46_02985 0.82 +0.7 638,810 + IAI46_02985 0.82 -0.7 638,811 - IAI46_02985 0.82 +0.7 638,828 + IAI46_02985 0.83 +0.5 638,828 + IAI46_02985 0.83 -0.1 638,879 + IAI46_02985 0.86 -0.2 638,895 + IAI46_02985 0.86 +0.5 638,895 + IAI46_02985 0.86 -0.7 638,896 - IAI46_02985 0.87 -0.5 638,904 + IAI46_02985 0.87 -0.1 638,904 + IAI46_02985 0.87 +0.3 638,904 + IAI46_02985 0.87 +0.2 638,904 + IAI46_02985 0.87 -0.3 638,905 - IAI46_02985 0.87 -0.5 638,905 - IAI46_02985 0.87 +0.6 638,905 - IAI46_02985 0.87 +0.2 638,905 - IAI46_02985 0.87 +0.2 638,910 + IAI46_02985 0.87 +0.5 638,952 + IAI46_02985 0.89 +1.0 638,978 + +0.1 638,978 + -0.8 638,978 + +0.2 638,979 - +0.0 639,057 + +1.1 639,070 + +0.4 639,071 - +0.2 639,071 - -0.2 639,071 - -0.2 639,078 + +1.3 639,091 - +0.4 639,097 - +0.3 639,173 + +0.7 639,173 + +1.2 639,174 - -0.6 639,183 + +0.5 639,190 + +0.0 639,197 + -0.3 639,197 + -0.0 639,221 + +0.1 639,221 + -0.0 639,222 - +1.8 639,538 + +0.9 639,539 - +0.6 639,564 - +0.3 639,582 + -0.5 639,642 - IAI46_02995 0.15 +0.0 639,679 - IAI46_02995 0.22 -0.4 639,821 + IAI46_02995 0.48 +0.7 639,855 + IAI46_02995 0.54 -0.0 639,856 - IAI46_02995 0.54 -0.3 639,856 - IAI46_02995 0.54 +0.5 639,856 - IAI46_02995 0.54 -0.7 640,053 + -0.4 640,054 - -0.8 640,059 + -0.3 640,077 + +0.8 640,077 + +0.7 640,077 + -0.0 640,078 - -0.7 640,078 - +0.6 640,078 - +0.1 640,097 + -0.1 640,097 + -1.9 640,097 + +0.0 640,098 - -0.2 640,098 - +0.5 640,101 + +0.5 640,102 - +0.2 640,111 - +0.5 640,120 - +0.4 640,124 + -0.5 640,124 + +0.1 640,124 + -0.1 640,125 - -0.5 640,125 - +0.5 640,125 - -0.3 640,125 - +1.1 640,132 + +0.2 640,133 - +0.5 640,139 + -1.1 640,140 - -0.1 640,197 - +0.7 640,197 - +1.0 640,197 - -0.1 640,198 + -1.0 640,223 + +0.9 640,223 + -0.5 640,223 + +0.6 640,224 - +0.5 640,225 + +0.9 640,225 + +0.4 640,226 - -1.4 640,226 - -0.0 640,226 - -0.8 640,368 + IAI46_03000 0.24 -0.0 640,368 + IAI46_03000 0.24 +0.2 640,369 - IAI46_03000 0.24 +0.5 640,437 - IAI46_03000 0.35 +0.8 640,543 - IAI46_03000 0.51 +0.2 640,879 + -1.1 640,879 + +1.0 640,880 - +0.3 640,996 + IAI46_03005 0.16 +1.3 641,009 + IAI46_03005 0.17 +1.1 641,010 - IAI46_03005 0.18 +0.1 641,056 + IAI46_03005 0.23 -0.8
Or see this region's nucleotide sequence