Strain Fitness in Serratia liquefaciens MT49 around IAI46_02770

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02765 and IAI46_02770 are separated by 315 nucleotidesIAI46_02770 and IAI46_02775 are separated by 17 nucleotidesIAI46_02775 and IAI46_02780 are separated by 37 nucleotides IAI46_02765: IAI46_02765 - 4-hydroxyphenylacetate catabolism regulatory protein HpaA, at 595,125 to 596,033 _02765 IAI46_02770: IAI46_02770 - 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component, at 596,349 to 597,911 _02770 IAI46_02775: IAI46_02775 - 4-hydroxyphenylacetate 3-monooxygenase, reductase component, at 597,929 to 598,444 _02775 IAI46_02780: IAI46_02780 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH, at 598,482 to 599,624 _02780 Position (kb) 596 597 598Strain fitness (log2 ratio) -2 -1 0 1 2at 595.388 kb on - strand, within IAI46_02765at 595.556 kb on + strand, within IAI46_02765at 595.600 kb on + strand, within IAI46_02765at 595.647 kb on - strand, within IAI46_02765at 595.647 kb on - strand, within IAI46_02765at 595.664 kb on + strand, within IAI46_02765at 595.664 kb on + strand, within IAI46_02765at 595.776 kb on + strand, within IAI46_02765at 595.777 kb on - strand, within IAI46_02765at 595.897 kb on + strand, within IAI46_02765at 595.911 kb on - strand, within IAI46_02765at 595.944 kb on - strandat 596.032 kb on - strandat 596.092 kb on + strandat 596.146 kb on + strandat 596.197 kb on + strandat 596.197 kb on + strandat 596.197 kb on + strandat 596.197 kb on + strandat 596.197 kb on + strandat 596.197 kb on + strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.212 kb on + strandat 596.213 kb on - strandat 596.315 kb on + strandat 596.315 kb on + strandat 596.316 kb on - strandat 596.316 kb on - strandat 596.325 kb on - strandat 596.347 kb on + strandat 596.347 kb on + strandat 596.347 kb on + strandat 596.348 kb on - strandat 596.436 kb on + strandat 596.436 kb on + strandat 596.436 kb on + strandat 596.436 kb on + strandat 596.437 kb on - strandat 596.437 kb on - strandat 596.438 kb on + strandat 596.439 kb on - strandat 596.442 kb on + strandat 596.442 kb on + strandat 596.442 kb on + strandat 596.443 kb on - strandat 596.443 kb on - strandat 596.487 kb on - strandat 596.514 kb on + strand, within IAI46_02770at 596.515 kb on - strand, within IAI46_02770at 596.515 kb on - strand, within IAI46_02770at 596.515 kb on - strand, within IAI46_02770at 596.515 kb on - strand, within IAI46_02770at 596.584 kb on - strand, within IAI46_02770at 596.670 kb on + strand, within IAI46_02770at 596.697 kb on + strand, within IAI46_02770at 596.742 kb on + strand, within IAI46_02770at 596.742 kb on + strand, within IAI46_02770at 596.743 kb on - strand, within IAI46_02770at 596.743 kb on - strand, within IAI46_02770at 596.802 kb on + strand, within IAI46_02770at 596.802 kb on + strand, within IAI46_02770at 596.803 kb on - strand, within IAI46_02770at 596.803 kb on - strand, within IAI46_02770at 596.808 kb on - strand, within IAI46_02770at 596.871 kb on + strand, within IAI46_02770at 596.872 kb on - strand, within IAI46_02770at 596.957 kb on + strand, within IAI46_02770at 597.069 kb on + strand, within IAI46_02770at 597.069 kb on + strand, within IAI46_02770at 597.069 kb on + strand, within IAI46_02770at 597.069 kb on + strand, within IAI46_02770at 597.070 kb on - strand, within IAI46_02770at 597.070 kb on - strand, within IAI46_02770at 597.070 kb on - strand, within IAI46_02770at 597.152 kb on + strand, within IAI46_02770at 597.152 kb on + strand, within IAI46_02770at 597.153 kb on - strand, within IAI46_02770at 597.293 kb on + strand, within IAI46_02770at 597.327 kb on - strand, within IAI46_02770at 597.353 kb on - strand, within IAI46_02770at 597.353 kb on - strand, within IAI46_02770at 597.389 kb on + strand, within IAI46_02770at 597.389 kb on + strand, within IAI46_02770at 597.390 kb on - strand, within IAI46_02770at 597.390 kb on - strand, within IAI46_02770at 597.390 kb on - strand, within IAI46_02770at 597.451 kb on - strand, within IAI46_02770at 597.451 kb on - strand, within IAI46_02770at 597.556 kb on - strand, within IAI46_02770at 597.584 kb on + strand, within IAI46_02770at 597.585 kb on - strand, within IAI46_02770at 597.585 kb on - strand, within IAI46_02770at 597.603 kb on + strand, within IAI46_02770at 597.616 kb on - strand, within IAI46_02770at 597.616 kb on - strand, within IAI46_02770at 597.620 kb on - strand, within IAI46_02770at 597.635 kb on + strand, within IAI46_02770at 597.718 kb on - strand, within IAI46_02770at 597.718 kb on - strand, within IAI46_02770at 597.718 kb on - strand, within IAI46_02770at 597.729 kb on + strand, within IAI46_02770at 597.730 kb on - strand, within IAI46_02770at 597.869 kb on + strandat 597.872 kb on + strandat 597.872 kb on + strandat 597.896 kb on + strandat 597.896 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.928 kb on + strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 597.929 kb on - strandat 598.007 kb on - strand, within IAI46_02775at 598.037 kb on - strand, within IAI46_02775at 598.152 kb on + strand, within IAI46_02775at 598.153 kb on - strand, within IAI46_02775at 598.153 kb on - strand, within IAI46_02775at 598.196 kb on - strand, within IAI46_02775at 598.273 kb on + strand, within IAI46_02775at 598.274 kb on - strand, within IAI46_02775at 598.274 kb on - strand, within IAI46_02775at 598.318 kb on + strand, within IAI46_02775at 598.338 kb on - strand, within IAI46_02775at 598.338 kb on - strand, within IAI46_02775at 598.391 kb on + strand, within IAI46_02775at 598.391 kb on + strand, within IAI46_02775at 598.483 kb on + strandat 598.483 kb on + strandat 598.484 kb on - strandat 598.547 kb on + strandat 598.566 kb on + strandat 598.567 kb on - strandat 598.610 kb on + strand, within IAI46_02780at 598.610 kb on + strand, within IAI46_02780at 598.610 kb on + strand, within IAI46_02780at 598.611 kb on - strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.612 kb on + strand, within IAI46_02780at 598.613 kb on - strand, within IAI46_02780at 598.613 kb on - strand, within IAI46_02780at 598.613 kb on - strand, within IAI46_02780at 598.613 kb on - strand, within IAI46_02780at 598.680 kb on - strand, within IAI46_02780at 598.680 kb on - strand, within IAI46_02780at 598.680 kb on - strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.681 kb on + strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.682 kb on - strand, within IAI46_02780at 598.762 kb on + strand, within IAI46_02780at 598.762 kb on + strand, within IAI46_02780

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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595,388 - IAI46_02765 0.29 +0.7
595,556 + IAI46_02765 0.47 +0.2
595,600 + IAI46_02765 0.52 +0.2
595,647 - IAI46_02765 0.57 -0.1
595,647 - IAI46_02765 0.57 -0.8
595,664 + IAI46_02765 0.59 -0.6
595,664 + IAI46_02765 0.59 -0.8
595,776 + IAI46_02765 0.72 -1.3
595,777 - IAI46_02765 0.72 +0.7
595,897 + IAI46_02765 0.85 +0.2
595,911 - IAI46_02765 0.86 -0.3
595,944 - -0.5
596,032 - -0.1
596,092 + -0.8
596,146 + +1.0
596,197 + +0.4
596,197 + -0.2
596,197 + +0.6
596,197 + +0.4
596,197 + +0.6
596,197 + +0.4
596,198 - +0.6
596,198 - -1.2
596,198 - +0.6
596,198 - -0.4
596,198 - -0.3
596,198 - -0.5
596,198 - -0.1
596,198 - -0.0
596,198 - -0.0
596,212 + -0.0
596,213 - +0.8
596,315 + -0.1
596,315 + -1.6
596,316 - +0.8
596,316 - +0.7
596,325 - -0.5
596,347 + +0.3
596,347 + +0.9
596,347 + +1.2
596,348 - +0.1
596,436 + +1.1
596,436 + +0.5
596,436 + +0.1
596,436 + -1.7
596,437 - +0.0
596,437 - -0.3
596,438 + +0.1
596,439 - +0.1
596,442 + -0.2
596,442 + +0.6
596,442 + +0.1
596,443 - -0.3
596,443 - +0.1
596,487 - +0.1
596,514 + IAI46_02770 0.11 -0.2
596,515 - IAI46_02770 0.11 +0.2
596,515 - IAI46_02770 0.11 +1.9
596,515 - IAI46_02770 0.11 -0.4
596,515 - IAI46_02770 0.11 +0.4
596,584 - IAI46_02770 0.15 -0.1
596,670 + IAI46_02770 0.21 -0.8
596,697 + IAI46_02770 0.22 +0.0
596,742 + IAI46_02770 0.25 -0.6
596,742 + IAI46_02770 0.25 -0.0
596,743 - IAI46_02770 0.25 -0.3
596,743 - IAI46_02770 0.25 +0.2
596,802 + IAI46_02770 0.29 +0.0
596,802 + IAI46_02770 0.29 +0.0
596,803 - IAI46_02770 0.29 +0.5
596,803 - IAI46_02770 0.29 -0.1
596,808 - IAI46_02770 0.29 +0.3
596,871 + IAI46_02770 0.33 +1.0
596,872 - IAI46_02770 0.33 -0.4
596,957 + IAI46_02770 0.39 +0.4
597,069 + IAI46_02770 0.46 -0.2
597,069 + IAI46_02770 0.46 +0.4
597,069 + IAI46_02770 0.46 -0.2
597,069 + IAI46_02770 0.46 +0.6
597,070 - IAI46_02770 0.46 +0.2
597,070 - IAI46_02770 0.46 -0.3
597,070 - IAI46_02770 0.46 +0.5
597,152 + IAI46_02770 0.51 -0.4
597,152 + IAI46_02770 0.51 +0.1
597,153 - IAI46_02770 0.51 -0.1
597,293 + IAI46_02770 0.60 +0.8
597,327 - IAI46_02770 0.63 +1.5
597,353 - IAI46_02770 0.64 -0.0
597,353 - IAI46_02770 0.64 +0.5
597,389 + IAI46_02770 0.67 +0.7
597,389 + IAI46_02770 0.67 +1.5
597,390 - IAI46_02770 0.67 -0.6
597,390 - IAI46_02770 0.67 +1.0
597,390 - IAI46_02770 0.67 +0.4
597,451 - IAI46_02770 0.71 -0.8
597,451 - IAI46_02770 0.71 -1.1
597,556 - IAI46_02770 0.77 -0.3
597,584 + IAI46_02770 0.79 +0.3
597,585 - IAI46_02770 0.79 -0.6
597,585 - IAI46_02770 0.79 +1.2
597,603 + IAI46_02770 0.80 +0.2
597,616 - IAI46_02770 0.81 +0.3
597,616 - IAI46_02770 0.81 -1.2
597,620 - IAI46_02770 0.81 -0.0
597,635 + IAI46_02770 0.82 -0.3
597,718 - IAI46_02770 0.88 +0.2
597,718 - IAI46_02770 0.88 +0.2
597,718 - IAI46_02770 0.88 +0.9
597,729 + IAI46_02770 0.88 +1.5
597,730 - IAI46_02770 0.88 +0.2
597,869 + +0.0
597,872 + -0.4
597,872 + +0.7
597,896 + -1.0
597,896 + +0.5
597,928 + +0.2
597,928 + +0.4
597,928 + -0.1
597,928 + -0.0
597,928 + -0.3
597,928 + -0.3
597,928 + +1.3
597,928 + -0.5
597,928 + +0.5
597,929 - -0.6
597,929 - -0.7
597,929 - -0.6
597,929 - +1.3
597,929 - -0.8
597,929 - +0.8
597,929 - -1.4
597,929 - +0.3
597,929 - -0.6
598,007 - IAI46_02775 0.15 +1.0
598,037 - IAI46_02775 0.21 +0.2
598,152 + IAI46_02775 0.43 +0.4
598,153 - IAI46_02775 0.43 +0.7
598,153 - IAI46_02775 0.43 +0.4
598,196 - IAI46_02775 0.52 -0.1
598,273 + IAI46_02775 0.67 -1.9
598,274 - IAI46_02775 0.67 +0.7
598,274 - IAI46_02775 0.67 +0.8
598,318 + IAI46_02775 0.75 +0.1
598,338 - IAI46_02775 0.79 -0.1
598,338 - IAI46_02775 0.79 +0.4
598,391 + IAI46_02775 0.90 +0.1
598,391 + IAI46_02775 0.90 -0.2
598,483 + -0.6
598,483 + +0.5
598,484 - -0.8
598,547 + +0.7
598,566 + +0.0
598,567 - -1.2
598,610 + IAI46_02780 0.11 +0.5
598,610 + IAI46_02780 0.11 -0.2
598,610 + IAI46_02780 0.11 -0.1
598,611 - IAI46_02780 0.11 +0.6
598,612 + IAI46_02780 0.11 -0.3
598,612 + IAI46_02780 0.11 -0.6
598,612 + IAI46_02780 0.11 +0.3
598,612 + IAI46_02780 0.11 +0.8
598,612 + IAI46_02780 0.11 -0.3
598,612 + IAI46_02780 0.11 +0.9
598,613 - IAI46_02780 0.11 +0.2
598,613 - IAI46_02780 0.11 -0.2
598,613 - IAI46_02780 0.11 +0.4
598,613 - IAI46_02780 0.11 -0.3
598,680 - IAI46_02780 0.17 -0.7
598,680 - IAI46_02780 0.17 +1.1
598,680 - IAI46_02780 0.17 +0.3
598,681 + IAI46_02780 0.17 +0.9
598,681 + IAI46_02780 0.17 -0.7
598,681 + IAI46_02780 0.17 -0.7
598,681 + IAI46_02780 0.17 +0.0
598,681 + IAI46_02780 0.17 +0.9
598,681 + IAI46_02780 0.17 +0.0
598,682 - IAI46_02780 0.17 -1.8
598,682 - IAI46_02780 0.17 +0.2
598,682 - IAI46_02780 0.17 +0.7
598,682 - IAI46_02780 0.17 +1.1
598,682 - IAI46_02780 0.17 -0.0
598,682 - IAI46_02780 0.17 +1.2
598,682 - IAI46_02780 0.17 -0.5
598,682 - IAI46_02780 0.17 +0.5
598,682 - IAI46_02780 0.17 -1.1
598,762 + IAI46_02780 0.24 -0.8
598,762 + IAI46_02780 0.24 -0.2

Or see this region's nucleotide sequence