Strain Fitness in Serratia liquefaciens MT49 around IAI46_02755

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02745 and IAI46_02750 are separated by 10 nucleotidesIAI46_02750 and IAI46_02755 are separated by 34 nucleotidesIAI46_02755 and IAI46_02760 are separated by 30 nucleotides IAI46_02745: IAI46_02745 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 591,573 to 591,959 _02745 IAI46_02750: IAI46_02750 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 591,970 to 592,773 _02750 IAI46_02755: IAI46_02755 - 4-hydroxy-2-oxoheptanedioate aldolase, at 592,808 to 593,614 _02755 IAI46_02760: IAI46_02760 - 4-hydroxyphenylacetate permease, at 593,645 to 594,967 _02760 Position (kb) 592 593 594Strain fitness (log2 ratio) -2 -1 0 1at 591.871 kb on - strand, within IAI46_02745at 591.918 kb on + strand, within IAI46_02745at 591.919 kb on - strand, within IAI46_02745at 591.978 kb on + strandat 591.991 kb on - strandat 592.087 kb on + strand, within IAI46_02750at 592.088 kb on - strand, within IAI46_02750at 592.088 kb on - strand, within IAI46_02750at 592.088 kb on - strand, within IAI46_02750at 592.110 kb on - strand, within IAI46_02750at 592.150 kb on - strand, within IAI46_02750at 592.269 kb on + strand, within IAI46_02750at 592.269 kb on + strand, within IAI46_02750at 592.351 kb on + strand, within IAI46_02750at 592.351 kb on + strand, within IAI46_02750at 592.352 kb on - strand, within IAI46_02750at 592.352 kb on - strand, within IAI46_02750at 592.354 kb on - strand, within IAI46_02750at 592.367 kb on - strand, within IAI46_02750at 592.367 kb on - strand, within IAI46_02750at 592.407 kb on + strand, within IAI46_02750at 592.649 kb on + strand, within IAI46_02750at 592.650 kb on - strand, within IAI46_02750at 592.650 kb on - strand, within IAI46_02750at 592.898 kb on + strand, within IAI46_02755at 592.971 kb on + strand, within IAI46_02755at 592.971 kb on + strand, within IAI46_02755at 592.971 kb on + strand, within IAI46_02755at 592.972 kb on - strand, within IAI46_02755at 592.972 kb on - strand, within IAI46_02755at 592.972 kb on - strand, within IAI46_02755at 593.091 kb on + strand, within IAI46_02755at 593.091 kb on + strand, within IAI46_02755at 593.167 kb on - strand, within IAI46_02755at 593.253 kb on + strand, within IAI46_02755at 593.253 kb on + strand, within IAI46_02755at 593.254 kb on - strand, within IAI46_02755at 593.328 kb on + strand, within IAI46_02755at 593.329 kb on - strand, within IAI46_02755at 593.332 kb on + strand, within IAI46_02755at 593.332 kb on + strand, within IAI46_02755at 593.332 kb on + strand, within IAI46_02755at 593.416 kb on + strand, within IAI46_02755at 593.416 kb on + strand, within IAI46_02755at 593.417 kb on - strand, within IAI46_02755at 593.417 kb on - strand, within IAI46_02755at 593.417 kb on - strand, within IAI46_02755at 593.486 kb on + strand, within IAI46_02755at 593.486 kb on + strand, within IAI46_02755at 593.486 kb on + strand, within IAI46_02755at 593.487 kb on - strand, within IAI46_02755at 593.518 kb on - strand, within IAI46_02755at 593.573 kb on - strandat 593.592 kb on + strandat 593.592 kb on + strandat 593.612 kb on + strandat 593.612 kb on + strandat 593.612 kb on + strandat 593.613 kb on - strandat 593.632 kb on + strandat 593.692 kb on + strandat 593.693 kb on - strandat 593.693 kb on - strandat 593.749 kb on + strandat 593.750 kb on - strandat 593.876 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.886 kb on - strand, within IAI46_02760at 593.886 kb on - strand, within IAI46_02760at 593.911 kb on + strand, within IAI46_02760at 593.911 kb on + strand, within IAI46_02760at 594.017 kb on + strand, within IAI46_02760at 594.018 kb on - strand, within IAI46_02760at 594.018 kb on - strand, within IAI46_02760at 594.021 kb on + strand, within IAI46_02760at 594.021 kb on + strand, within IAI46_02760at 594.021 kb on + strand, within IAI46_02760at 594.036 kb on + strand, within IAI46_02760at 594.036 kb on + strand, within IAI46_02760at 594.037 kb on - strand, within IAI46_02760at 594.077 kb on + strand, within IAI46_02760at 594.077 kb on + strand, within IAI46_02760at 594.077 kb on + strand, within IAI46_02760at 594.078 kb on - strand, within IAI46_02760at 594.078 kb on - strand, within IAI46_02760at 594.087 kb on - strand, within IAI46_02760at 594.087 kb on - strand, within IAI46_02760at 594.087 kb on - strand, within IAI46_02760at 594.130 kb on + strand, within IAI46_02760at 594.130 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.182 kb on - strand, within IAI46_02760at 594.182 kb on - strand, within IAI46_02760at 594.292 kb on + strand, within IAI46_02760at 594.292 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.459 kb on - strand, within IAI46_02760at 594.459 kb on - strand, within IAI46_02760at 594.461 kb on - strand, within IAI46_02760at 594.470 kb on + strand, within IAI46_02760at 594.470 kb on + strand, within IAI46_02760at 594.471 kb on - strand, within IAI46_02760at 594.471 kb on - strand, within IAI46_02760at 594.505 kb on + strand, within IAI46_02760at 594.505 kb on + strand, within IAI46_02760at 594.505 kb on + strand, within IAI46_02760at 594.506 kb on - strand, within IAI46_02760at 594.547 kb on + strand, within IAI46_02760at 594.547 kb on + strand, within IAI46_02760at 594.547 kb on + strand, within IAI46_02760at 594.565 kb on + strand, within IAI46_02760at 594.566 kb on - strand, within IAI46_02760at 594.593 kb on - strand, within IAI46_02760

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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591,871 - IAI46_02745 0.77 -0.3
591,918 + IAI46_02745 0.89 +0.1
591,919 - IAI46_02745 0.89 +0.2
591,978 + +0.3
591,991 - -0.2
592,087 + IAI46_02750 0.15 +0.4
592,088 - IAI46_02750 0.15 -0.0
592,088 - IAI46_02750 0.15 -0.1
592,088 - IAI46_02750 0.15 +0.7
592,110 - IAI46_02750 0.17 +0.3
592,150 - IAI46_02750 0.22 +0.0
592,269 + IAI46_02750 0.37 +0.1
592,269 + IAI46_02750 0.37 +0.1
592,351 + IAI46_02750 0.47 +0.2
592,351 + IAI46_02750 0.47 -0.9
592,352 - IAI46_02750 0.48 +0.3
592,352 - IAI46_02750 0.48 +0.1
592,354 - IAI46_02750 0.48 -0.1
592,367 - IAI46_02750 0.49 -0.2
592,367 - IAI46_02750 0.49 +0.7
592,407 + IAI46_02750 0.54 +0.2
592,649 + IAI46_02750 0.84 -1.3
592,650 - IAI46_02750 0.85 -0.1
592,650 - IAI46_02750 0.85 +0.7
592,898 + IAI46_02755 0.11 +0.0
592,971 + IAI46_02755 0.20 -0.3
592,971 + IAI46_02755 0.20 +1.0
592,971 + IAI46_02755 0.20 -0.2
592,972 - IAI46_02755 0.20 +1.3
592,972 - IAI46_02755 0.20 +0.1
592,972 - IAI46_02755 0.20 -0.3
593,091 + IAI46_02755 0.35 -0.6
593,091 + IAI46_02755 0.35 +1.1
593,167 - IAI46_02755 0.44 -0.3
593,253 + IAI46_02755 0.55 +0.4
593,253 + IAI46_02755 0.55 +0.3
593,254 - IAI46_02755 0.55 +0.4
593,328 + IAI46_02755 0.64 -0.7
593,329 - IAI46_02755 0.65 +0.4
593,332 + IAI46_02755 0.65 +0.6
593,332 + IAI46_02755 0.65 -0.3
593,332 + IAI46_02755 0.65 -0.1
593,416 + IAI46_02755 0.75 -2.5
593,416 + IAI46_02755 0.75 -0.1
593,417 - IAI46_02755 0.75 -0.3
593,417 - IAI46_02755 0.75 +1.2
593,417 - IAI46_02755 0.75 +0.4
593,486 + IAI46_02755 0.84 +0.7
593,486 + IAI46_02755 0.84 -0.4
593,486 + IAI46_02755 0.84 -0.9
593,487 - IAI46_02755 0.84 +0.2
593,518 - IAI46_02755 0.88 +0.0
593,573 - -0.5
593,592 + +0.1
593,592 + +0.6
593,612 + +0.1
593,612 + +1.1
593,612 + +0.6
593,613 - -0.4
593,632 + +0.3
593,692 + +0.7
593,693 - -0.4
593,693 - -1.0
593,749 + -0.8
593,750 - +0.1
593,876 + IAI46_02760 0.17 -0.2
593,885 + IAI46_02760 0.18 +0.7
593,885 + IAI46_02760 0.18 -0.3
593,885 + IAI46_02760 0.18 +0.2
593,885 + IAI46_02760 0.18 -0.7
593,885 + IAI46_02760 0.18 +0.2
593,885 + IAI46_02760 0.18 +0.5
593,886 - IAI46_02760 0.18 -0.8
593,886 - IAI46_02760 0.18 +0.5
593,911 + IAI46_02760 0.20 -0.0
593,911 + IAI46_02760 0.20 +0.9
594,017 + IAI46_02760 0.28 +0.1
594,018 - IAI46_02760 0.28 +0.8
594,018 - IAI46_02760 0.28 -0.6
594,021 + IAI46_02760 0.28 -1.0
594,021 + IAI46_02760 0.28 +0.0
594,021 + IAI46_02760 0.28 -0.1
594,036 + IAI46_02760 0.30 +0.9
594,036 + IAI46_02760 0.30 +0.7
594,037 - IAI46_02760 0.30 +0.6
594,077 + IAI46_02760 0.33 +0.1
594,077 + IAI46_02760 0.33 -0.9
594,077 + IAI46_02760 0.33 -0.0
594,078 - IAI46_02760 0.33 -1.3
594,078 - IAI46_02760 0.33 +0.3
594,087 - IAI46_02760 0.33 +0.3
594,087 - IAI46_02760 0.33 +0.5
594,087 - IAI46_02760 0.33 +0.2
594,130 + IAI46_02760 0.37 +0.9
594,130 + IAI46_02760 0.37 -0.9
594,181 + IAI46_02760 0.41 +0.3
594,181 + IAI46_02760 0.41 +0.1
594,181 + IAI46_02760 0.41 +0.0
594,181 + IAI46_02760 0.41 +0.7
594,181 + IAI46_02760 0.41 -0.6
594,182 - IAI46_02760 0.41 -0.5
594,182 - IAI46_02760 0.41 -1.0
594,292 + IAI46_02760 0.49 +1.5
594,292 + IAI46_02760 0.49 +0.3
594,458 + IAI46_02760 0.61 -0.0
594,458 + IAI46_02760 0.61 +0.2
594,458 + IAI46_02760 0.61 +0.2
594,458 + IAI46_02760 0.61 +0.1
594,458 + IAI46_02760 0.61 +1.1
594,458 + IAI46_02760 0.61 -0.2
594,459 - IAI46_02760 0.62 -0.1
594,459 - IAI46_02760 0.62 -0.2
594,461 - IAI46_02760 0.62 +0.6
594,470 + IAI46_02760 0.62 -0.0
594,470 + IAI46_02760 0.62 +0.2
594,471 - IAI46_02760 0.62 +0.9
594,471 - IAI46_02760 0.62 +0.3
594,505 + IAI46_02760 0.65 +0.9
594,505 + IAI46_02760 0.65 -0.3
594,505 + IAI46_02760 0.65 -0.1
594,506 - IAI46_02760 0.65 -0.1
594,547 + IAI46_02760 0.68 +0.1
594,547 + IAI46_02760 0.68 -1.3
594,547 + IAI46_02760 0.68 -0.3
594,565 + IAI46_02760 0.70 -0.1
594,566 - IAI46_02760 0.70 +0.6
594,593 - IAI46_02760 0.72 +0.5

Or see this region's nucleotide sequence