Strain Fitness in Serratia liquefaciens MT49 around IAI46_02700

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02695 and IAI46_02700 overlap by 26 nucleotidesIAI46_02700 and IAI46_02705 overlap by 8 nucleotidesIAI46_02705 and IAI46_02710 are separated by 10 nucleotides IAI46_02695: IAI46_02695 - APC family permease, at 582,223 to 583,716 _02695 IAI46_02700: IAI46_02700 - DUF3156 family protein, at 583,691 to 584,278 _02700 IAI46_02705: IAI46_02705 - SDR family oxidoreductase, at 584,271 to 585,053 _02705 IAI46_02710: IAI46_02710 - molybdenum cofactor biosynthesis F family protein, at 585,064 to 585,861 _02710 Position (kb) 583 584 585Strain fitness (log2 ratio) -2 -1 0 1 2at 582.749 kb on + strand, within IAI46_02695at 582.749 kb on + strand, within IAI46_02695at 582.750 kb on - strand, within IAI46_02695at 582.840 kb on - strand, within IAI46_02695at 582.840 kb on - strand, within IAI46_02695at 582.867 kb on + strand, within IAI46_02695at 582.867 kb on + strand, within IAI46_02695at 582.867 kb on + strand, within IAI46_02695at 582.985 kb on + strand, within IAI46_02695at 582.986 kb on - strand, within IAI46_02695at 582.986 kb on - strand, within IAI46_02695at 583.182 kb on + strand, within IAI46_02695at 583.221 kb on + strand, within IAI46_02695at 583.222 kb on - strand, within IAI46_02695at 583.222 kb on - strand, within IAI46_02695at 583.332 kb on + strand, within IAI46_02695at 583.332 kb on + strand, within IAI46_02695at 583.375 kb on + strand, within IAI46_02695at 583.376 kb on - strand, within IAI46_02695at 583.438 kb on + strand, within IAI46_02695at 583.500 kb on + strand, within IAI46_02695at 583.501 kb on - strand, within IAI46_02695at 583.501 kb on - strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.505 kb on - strand, within IAI46_02695at 583.505 kb on - strand, within IAI46_02695at 583.505 kb on - strand, within IAI46_02695at 583.506 kb on + strand, within IAI46_02695at 583.506 kb on + strand, within IAI46_02695at 583.506 kb on + strand, within IAI46_02695at 583.507 kb on - strand, within IAI46_02695at 583.507 kb on - strand, within IAI46_02695at 583.540 kb on + strand, within IAI46_02695at 583.540 kb on + strand, within IAI46_02695at 583.540 kb on + strand, within IAI46_02695at 583.540 kb on + strand, within IAI46_02695at 583.541 kb on - strand, within IAI46_02695at 583.541 kb on - strand, within IAI46_02695at 583.541 kb on - strand, within IAI46_02695at 583.580 kb on - strandat 583.624 kb on - strandat 583.646 kb on + strandat 583.647 kb on - strandat 583.647 kb on - strandat 583.701 kb on + strandat 583.701 kb on + strandat 583.702 kb on - strandat 583.702 kb on - strandat 583.714 kb on + strandat 583.715 kb on - strandat 583.722 kb on - strandat 583.793 kb on + strand, within IAI46_02700at 583.793 kb on + strand, within IAI46_02700at 583.794 kb on - strand, within IAI46_02700at 583.794 kb on - strand, within IAI46_02700at 583.794 kb on - strand, within IAI46_02700at 583.794 kb on - strand, within IAI46_02700at 583.885 kb on + strand, within IAI46_02700at 583.894 kb on + strand, within IAI46_02700at 583.894 kb on + strand, within IAI46_02700at 583.894 kb on + strand, within IAI46_02700at 583.894 kb on + strand, within IAI46_02700at 583.895 kb on - strand, within IAI46_02700at 583.895 kb on - strand, within IAI46_02700at 583.900 kb on + strand, within IAI46_02700at 583.953 kb on + strand, within IAI46_02700at 584.098 kb on + strand, within IAI46_02700at 584.099 kb on - strand, within IAI46_02700at 584.192 kb on + strand, within IAI46_02700at 584.277 kb on - strandat 584.277 kb on - strandat 584.277 kb on - strandat 584.360 kb on + strand, within IAI46_02705at 584.360 kb on + strand, within IAI46_02705at 584.360 kb on + strand, within IAI46_02705at 584.360 kb on + strand, within IAI46_02705at 584.361 kb on - strand, within IAI46_02705at 584.760 kb on + strand, within IAI46_02705at 584.877 kb on + strand, within IAI46_02705at 584.877 kb on + strand, within IAI46_02705at 584.878 kb on - strand, within IAI46_02705at 584.887 kb on + strand, within IAI46_02705at 584.888 kb on - strand, within IAI46_02705at 585.025 kb on + strandat 585.041 kb on + strandat 585.041 kb on + strandat 585.041 kb on + strandat 585.052 kb on - strandat 585.070 kb on - strandat 585.080 kb on + strandat 585.084 kb on + strandat 585.085 kb on - strandat 585.129 kb on + strandat 585.130 kb on - strandat 585.130 kb on - strandat 585.159 kb on + strand, within IAI46_02710at 585.173 kb on + strand, within IAI46_02710at 585.173 kb on + strand, within IAI46_02710at 585.241 kb on + strand, within IAI46_02710at 585.242 kb on - strand, within IAI46_02710at 585.257 kb on - strand, within IAI46_02710

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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582,749 + IAI46_02695 0.35 -0.2
582,749 + IAI46_02695 0.35 -0.3
582,750 - IAI46_02695 0.35 +0.4
582,840 - IAI46_02695 0.41 -0.3
582,840 - IAI46_02695 0.41 -0.5
582,867 + IAI46_02695 0.43 -0.1
582,867 + IAI46_02695 0.43 +0.3
582,867 + IAI46_02695 0.43 -0.6
582,985 + IAI46_02695 0.51 +0.0
582,986 - IAI46_02695 0.51 +1.9
582,986 - IAI46_02695 0.51 +0.2
583,182 + IAI46_02695 0.64 -2.3
583,221 + IAI46_02695 0.67 -0.1
583,222 - IAI46_02695 0.67 -0.5
583,222 - IAI46_02695 0.67 +0.9
583,332 + IAI46_02695 0.74 +0.2
583,332 + IAI46_02695 0.74 +0.6
583,375 + IAI46_02695 0.77 +0.3
583,376 - IAI46_02695 0.77 +0.6
583,438 + IAI46_02695 0.81 +0.3
583,500 + IAI46_02695 0.85 -0.4
583,501 - IAI46_02695 0.86 +0.5
583,501 - IAI46_02695 0.86 -0.7
583,504 + IAI46_02695 0.86 +0.4
583,504 + IAI46_02695 0.86 -1.6
583,504 + IAI46_02695 0.86 +0.0
583,504 + IAI46_02695 0.86 -0.6
583,504 + IAI46_02695 0.86 -0.4
583,504 + IAI46_02695 0.86 -0.3
583,504 + IAI46_02695 0.86 -0.5
583,505 - IAI46_02695 0.86 -0.1
583,505 - IAI46_02695 0.86 +0.6
583,505 - IAI46_02695 0.86 +0.2
583,506 + IAI46_02695 0.86 +0.2
583,506 + IAI46_02695 0.86 +0.7
583,506 + IAI46_02695 0.86 +0.5
583,507 - IAI46_02695 0.86 -0.3
583,507 - IAI46_02695 0.86 +0.7
583,540 + IAI46_02695 0.88 +0.0
583,540 + IAI46_02695 0.88 -2.6
583,540 + IAI46_02695 0.88 -0.8
583,540 + IAI46_02695 0.88 -0.4
583,541 - IAI46_02695 0.88 +0.1
583,541 - IAI46_02695 0.88 +0.5
583,541 - IAI46_02695 0.88 +0.0
583,580 - -0.4
583,624 - +0.3
583,646 + -0.4
583,647 - -0.6
583,647 - +0.2
583,701 + +0.3
583,701 + -1.6
583,702 - -0.1
583,702 - +0.6
583,714 + -0.3
583,715 - +1.2
583,722 - +0.1
583,793 + IAI46_02700 0.17 -0.1
583,793 + IAI46_02700 0.17 -2.3
583,794 - IAI46_02700 0.18 -0.9
583,794 - IAI46_02700 0.18 +0.3
583,794 - IAI46_02700 0.18 +0.1
583,794 - IAI46_02700 0.18 +0.6
583,885 + IAI46_02700 0.33 +0.7
583,894 + IAI46_02700 0.35 +0.5
583,894 + IAI46_02700 0.35 +1.0
583,894 + IAI46_02700 0.35 +0.7
583,894 + IAI46_02700 0.35 +0.4
583,895 - IAI46_02700 0.35 +0.2
583,895 - IAI46_02700 0.35 +1.0
583,900 + IAI46_02700 0.36 +0.3
583,953 + IAI46_02700 0.45 +0.4
584,098 + IAI46_02700 0.69 +0.1
584,099 - IAI46_02700 0.69 +0.7
584,192 + IAI46_02700 0.85 -0.0
584,277 - +0.7
584,277 - -0.5
584,277 - -0.2
584,360 + IAI46_02705 0.11 -0.0
584,360 + IAI46_02705 0.11 +0.4
584,360 + IAI46_02705 0.11 +0.7
584,360 + IAI46_02705 0.11 -0.2
584,361 - IAI46_02705 0.11 +0.6
584,760 + IAI46_02705 0.62 -0.1
584,877 + IAI46_02705 0.77 +0.0
584,877 + IAI46_02705 0.77 -0.7
584,878 - IAI46_02705 0.78 -0.4
584,887 + IAI46_02705 0.79 +1.2
584,888 - IAI46_02705 0.79 -0.3
585,025 + +0.5
585,041 + +0.4
585,041 + +0.1
585,041 + -0.5
585,052 - -1.1
585,070 - +1.4
585,080 + +0.3
585,084 + +0.2
585,085 - +0.1
585,129 + -1.5
585,130 - +0.3
585,130 - -0.2
585,159 + IAI46_02710 0.12 +0.5
585,173 + IAI46_02710 0.14 +0.3
585,173 + IAI46_02710 0.14 +0.0
585,241 + IAI46_02710 0.22 -0.0
585,242 - IAI46_02710 0.22 -0.5
585,257 - IAI46_02710 0.24 -1.3

Or see this region's nucleotide sequence