Strain Fitness in Serratia liquefaciens MT49 around IAI46_02685

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02680 and IAI46_02685 are separated by 13 nucleotidesIAI46_02685 and IAI46_02690 are separated by 140 nucleotides IAI46_02680: IAI46_02680 - class II histone deacetylase, at 578,571 to 579,683 _02680 IAI46_02685: IAI46_02685 - MFS transporter, at 579,697 to 580,869 _02685 IAI46_02690: IAI46_02690 - helix-turn-helix transcriptional regulator, at 581,010 to 581,657 _02690 Position (kb) 579 580 581Strain fitness (log2 ratio) -2 -1 0 1 2at 578.734 kb on + strand, within IAI46_02680at 578.734 kb on + strand, within IAI46_02680at 578.734 kb on + strand, within IAI46_02680at 578.734 kb on + strand, within IAI46_02680at 578.735 kb on - strand, within IAI46_02680at 578.937 kb on + strand, within IAI46_02680at 578.937 kb on + strand, within IAI46_02680at 578.937 kb on + strand, within IAI46_02680at 578.937 kb on + strand, within IAI46_02680at 578.938 kb on - strand, within IAI46_02680at 578.938 kb on - strand, within IAI46_02680at 578.938 kb on - strand, within IAI46_02680at 578.954 kb on - strand, within IAI46_02680at 578.954 kb on - strand, within IAI46_02680at 578.954 kb on - strand, within IAI46_02680at 578.954 kb on - strand, within IAI46_02680at 579.002 kb on + strand, within IAI46_02680at 579.002 kb on + strand, within IAI46_02680at 579.002 kb on + strand, within IAI46_02680at 579.003 kb on - strand, within IAI46_02680at 579.090 kb on + strand, within IAI46_02680at 579.090 kb on + strand, within IAI46_02680at 579.091 kb on - strand, within IAI46_02680at 579.091 kb on - strand, within IAI46_02680at 579.091 kb on - strand, within IAI46_02680at 579.091 kb on - strand, within IAI46_02680at 579.091 kb on - strand, within IAI46_02680at 579.109 kb on + strand, within IAI46_02680at 579.109 kb on + strand, within IAI46_02680at 579.109 kb on + strand, within IAI46_02680at 579.109 kb on + strand, within IAI46_02680at 579.110 kb on - strand, within IAI46_02680at 579.110 kb on - strand, within IAI46_02680at 579.110 kb on - strand, within IAI46_02680at 579.113 kb on + strand, within IAI46_02680at 579.113 kb on + strand, within IAI46_02680at 579.114 kb on - strand, within IAI46_02680at 579.114 kb on - strand, within IAI46_02680at 579.114 kb on - strand, within IAI46_02680at 579.114 kb on - strand, within IAI46_02680at 579.114 kb on - strand, within IAI46_02680at 579.122 kb on + strand, within IAI46_02680at 579.123 kb on - strand, within IAI46_02680at 579.123 kb on - strand, within IAI46_02680at 579.176 kb on - strand, within IAI46_02680at 579.176 kb on - strand, within IAI46_02680at 579.176 kb on - strand, within IAI46_02680at 579.209 kb on + strand, within IAI46_02680at 579.280 kb on + strand, within IAI46_02680at 579.281 kb on - strand, within IAI46_02680at 579.358 kb on + strand, within IAI46_02680at 579.358 kb on + strand, within IAI46_02680at 579.358 kb on + strand, within IAI46_02680at 579.359 kb on - strand, within IAI46_02680at 579.414 kb on + strand, within IAI46_02680at 579.414 kb on + strand, within IAI46_02680at 579.414 kb on + strand, within IAI46_02680at 579.414 kb on + strand, within IAI46_02680at 579.415 kb on - strand, within IAI46_02680at 579.415 kb on - strand, within IAI46_02680at 579.415 kb on - strand, within IAI46_02680at 579.415 kb on - strand, within IAI46_02680at 579.457 kb on - strand, within IAI46_02680at 579.489 kb on + strand, within IAI46_02680at 579.489 kb on + strand, within IAI46_02680at 579.489 kb on + strand, within IAI46_02680at 579.489 kb on + strand, within IAI46_02680at 579.490 kb on - strand, within IAI46_02680at 579.490 kb on - strand, within IAI46_02680at 579.686 kb on + strandat 579.686 kb on + strandat 579.687 kb on - strandat 579.687 kb on - strandat 579.687 kb on - strandat 579.689 kb on + strandat 579.689 kb on + strandat 579.689 kb on + strandat 579.689 kb on + strandat 579.689 kb on + strandat 579.690 kb on - strandat 579.690 kb on - strandat 579.690 kb on - strandat 579.690 kb on - strandat 579.690 kb on - strandat 579.698 kb on + strandat 579.939 kb on + strand, within IAI46_02685at 580.025 kb on + strand, within IAI46_02685at 580.202 kb on + strand, within IAI46_02685at 580.202 kb on + strand, within IAI46_02685at 580.203 kb on - strand, within IAI46_02685at 580.349 kb on + strand, within IAI46_02685at 580.350 kb on - strand, within IAI46_02685at 580.350 kb on - strand, within IAI46_02685at 580.350 kb on - strand, within IAI46_02685at 580.350 kb on - strand, within IAI46_02685at 580.350 kb on - strand, within IAI46_02685at 580.351 kb on + strand, within IAI46_02685at 580.351 kb on + strand, within IAI46_02685at 580.442 kb on + strand, within IAI46_02685at 580.482 kb on + strand, within IAI46_02685at 580.483 kb on - strand, within IAI46_02685at 580.483 kb on - strand, within IAI46_02685at 580.483 kb on - strand, within IAI46_02685at 580.846 kb on + strandat 580.869 kb on + strandat 580.872 kb on + strandat 580.873 kb on - strandat 580.873 kb on - strandat 580.873 kb on - strandat 580.873 kb on - strandat 580.873 kb on - strandat 580.873 kb on - strandat 580.873 kb on - strandat 580.873 kb on - strandat 580.873 kb on - strandat 580.904 kb on + strandat 580.904 kb on + strandat 580.905 kb on - strandat 580.906 kb on + strandat 580.907 kb on - strandat 580.962 kb on + strandat 580.972 kb on - strandat 580.985 kb on + strandat 580.986 kb on - strandat 581.005 kb on - strandat 581.025 kb on - strandat 581.078 kb on + strand, within IAI46_02690at 581.130 kb on + strand, within IAI46_02690at 581.130 kb on + strand, within IAI46_02690at 581.139 kb on - strand, within IAI46_02690at 581.162 kb on + strand, within IAI46_02690at 581.162 kb on + strand, within IAI46_02690at 581.163 kb on - strand, within IAI46_02690at 581.327 kb on + strand, within IAI46_02690at 581.327 kb on + strand, within IAI46_02690at 581.328 kb on - strand, within IAI46_02690at 581.363 kb on + strand, within IAI46_02690at 581.364 kb on - strand, within IAI46_02690at 581.379 kb on - strand, within IAI46_02690at 581.379 kb on - strand, within IAI46_02690at 581.389 kb on + strand, within IAI46_02690at 581.390 kb on - strand, within IAI46_02690at 581.390 kb on - strand, within IAI46_02690at 581.390 kb on - strand, within IAI46_02690at 581.392 kb on + strand, within IAI46_02690at 581.392 kb on + strand, within IAI46_02690at 581.392 kb on + strand, within IAI46_02690at 581.393 kb on - strand, within IAI46_02690at 581.393 kb on - strand, within IAI46_02690at 581.393 kb on - strand, within IAI46_02690at 581.435 kb on + strand, within IAI46_02690at 581.435 kb on + strand, within IAI46_02690at 581.435 kb on + strand, within IAI46_02690at 581.436 kb on - strand, within IAI46_02690at 581.500 kb on + strand, within IAI46_02690at 581.501 kb on - strand, within IAI46_02690at 581.501 kb on - strand, within IAI46_02690at 581.501 kb on - strand, within IAI46_02690at 581.538 kb on - strand, within IAI46_02690at 581.540 kb on - strand, within IAI46_02690at 581.572 kb on + strand, within IAI46_02690at 581.573 kb on - strand, within IAI46_02690at 581.573 kb on - strand, within IAI46_02690at 581.573 kb on - strand, within IAI46_02690at 581.630 kb on + strandat 581.631 kb on - strandat 581.715 kb on - strandat 581.722 kb on + strandat 581.729 kb on - strandat 581.755 kb on + strandat 581.790 kb on + strandat 581.790 kb on + strandat 581.794 kb on + strandat 581.794 kb on + strandat 581.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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578,734 + IAI46_02680 0.15 +0.3
578,734 + IAI46_02680 0.15 -0.8
578,734 + IAI46_02680 0.15 +0.7
578,734 + IAI46_02680 0.15 -1.6
578,735 - IAI46_02680 0.15 +0.2
578,937 + IAI46_02680 0.33 +0.2
578,937 + IAI46_02680 0.33 -0.5
578,937 + IAI46_02680 0.33 +0.2
578,937 + IAI46_02680 0.33 -1.6
578,938 - IAI46_02680 0.33 +0.6
578,938 - IAI46_02680 0.33 -0.0
578,938 - IAI46_02680 0.33 +0.3
578,954 - IAI46_02680 0.34 +0.3
578,954 - IAI46_02680 0.34 +0.1
578,954 - IAI46_02680 0.34 -0.1
578,954 - IAI46_02680 0.34 +0.2
579,002 + IAI46_02680 0.39 -0.5
579,002 + IAI46_02680 0.39 +0.7
579,002 + IAI46_02680 0.39 -0.4
579,003 - IAI46_02680 0.39 -0.4
579,090 + IAI46_02680 0.47 -1.0
579,090 + IAI46_02680 0.47 -0.5
579,091 - IAI46_02680 0.47 +0.3
579,091 - IAI46_02680 0.47 -0.1
579,091 - IAI46_02680 0.47 +1.2
579,091 - IAI46_02680 0.47 +1.1
579,091 - IAI46_02680 0.47 +0.4
579,109 + IAI46_02680 0.48 +0.2
579,109 + IAI46_02680 0.48 +1.3
579,109 + IAI46_02680 0.48 -0.1
579,109 + IAI46_02680 0.48 +0.5
579,110 - IAI46_02680 0.48 +0.7
579,110 - IAI46_02680 0.48 +0.4
579,110 - IAI46_02680 0.48 -0.6
579,113 + IAI46_02680 0.49 +0.1
579,113 + IAI46_02680 0.49 -0.7
579,114 - IAI46_02680 0.49 -0.1
579,114 - IAI46_02680 0.49 -0.3
579,114 - IAI46_02680 0.49 +1.5
579,114 - IAI46_02680 0.49 -0.4
579,114 - IAI46_02680 0.49 +0.4
579,122 + IAI46_02680 0.50 -0.7
579,123 - IAI46_02680 0.50 +0.2
579,123 - IAI46_02680 0.50 +0.7
579,176 - IAI46_02680 0.54 +0.2
579,176 - IAI46_02680 0.54 +0.4
579,176 - IAI46_02680 0.54 -0.7
579,209 + IAI46_02680 0.57 -0.3
579,280 + IAI46_02680 0.64 +0.3
579,281 - IAI46_02680 0.64 +0.4
579,358 + IAI46_02680 0.71 +1.1
579,358 + IAI46_02680 0.71 +1.5
579,358 + IAI46_02680 0.71 -0.3
579,359 - IAI46_02680 0.71 +0.8
579,414 + IAI46_02680 0.76 +0.2
579,414 + IAI46_02680 0.76 +0.0
579,414 + IAI46_02680 0.76 +0.8
579,414 + IAI46_02680 0.76 +1.4
579,415 - IAI46_02680 0.76 -0.3
579,415 - IAI46_02680 0.76 -0.2
579,415 - IAI46_02680 0.76 -0.4
579,415 - IAI46_02680 0.76 +0.0
579,457 - IAI46_02680 0.80 -1.1
579,489 + IAI46_02680 0.82 -0.2
579,489 + IAI46_02680 0.82 -0.2
579,489 + IAI46_02680 0.82 +0.5
579,489 + IAI46_02680 0.82 +0.4
579,490 - IAI46_02680 0.83 -0.7
579,490 - IAI46_02680 0.83 +1.0
579,686 + -0.4
579,686 + +0.4
579,687 - -0.4
579,687 - -0.5
579,687 - +0.2
579,689 + +1.6
579,689 + -0.3
579,689 + +0.1
579,689 + -0.3
579,689 + -0.7
579,690 - +0.9
579,690 - +0.7
579,690 - +0.1
579,690 - -0.1
579,690 - +0.1
579,698 + +0.6
579,939 + IAI46_02685 0.21 +0.5
580,025 + IAI46_02685 0.28 +0.1
580,202 + IAI46_02685 0.43 +0.7
580,202 + IAI46_02685 0.43 -0.9
580,203 - IAI46_02685 0.43 +0.2
580,349 + IAI46_02685 0.56 -0.3
580,350 - IAI46_02685 0.56 +0.0
580,350 - IAI46_02685 0.56 -0.1
580,350 - IAI46_02685 0.56 -0.1
580,350 - IAI46_02685 0.56 +0.7
580,350 - IAI46_02685 0.56 -2.2
580,351 + IAI46_02685 0.56 -0.1
580,351 + IAI46_02685 0.56 +0.7
580,442 + IAI46_02685 0.64 +0.6
580,482 + IAI46_02685 0.67 -0.1
580,483 - IAI46_02685 0.67 +0.1
580,483 - IAI46_02685 0.67 +1.5
580,483 - IAI46_02685 0.67 +0.2
580,846 + +0.3
580,869 + -0.5
580,872 + -0.5
580,873 - -0.2
580,873 - +0.7
580,873 - +0.2
580,873 - +0.2
580,873 - +2.0
580,873 - +0.2
580,873 - +0.2
580,873 - -0.4
580,873 - -0.2
580,904 + +0.4
580,904 + +0.5
580,905 - +1.1
580,906 + -0.7
580,907 - -0.6
580,962 + -0.3
580,972 - -0.4
580,985 + -0.4
580,986 - +0.7
581,005 - +0.8
581,025 - -0.4
581,078 + IAI46_02690 0.10 -1.1
581,130 + IAI46_02690 0.19 -0.4
581,130 + IAI46_02690 0.19 +0.4
581,139 - IAI46_02690 0.20 +0.4
581,162 + IAI46_02690 0.23 +0.0
581,162 + IAI46_02690 0.23 -1.3
581,163 - IAI46_02690 0.24 -0.4
581,327 + IAI46_02690 0.49 -0.7
581,327 + IAI46_02690 0.49 -1.2
581,328 - IAI46_02690 0.49 +0.3
581,363 + IAI46_02690 0.54 -1.0
581,364 - IAI46_02690 0.55 -0.2
581,379 - IAI46_02690 0.57 -0.1
581,379 - IAI46_02690 0.57 -0.7
581,389 + IAI46_02690 0.58 +0.9
581,390 - IAI46_02690 0.59 +0.6
581,390 - IAI46_02690 0.59 +0.9
581,390 - IAI46_02690 0.59 +0.6
581,392 + IAI46_02690 0.59 -0.3
581,392 + IAI46_02690 0.59 +0.7
581,392 + IAI46_02690 0.59 -0.3
581,393 - IAI46_02690 0.59 +0.2
581,393 - IAI46_02690 0.59 -0.2
581,393 - IAI46_02690 0.59 +0.1
581,435 + IAI46_02690 0.66 -0.0
581,435 + IAI46_02690 0.66 +0.8
581,435 + IAI46_02690 0.66 +0.6
581,436 - IAI46_02690 0.66 +0.8
581,500 + IAI46_02690 0.76 -0.4
581,501 - IAI46_02690 0.76 +0.9
581,501 - IAI46_02690 0.76 -1.2
581,501 - IAI46_02690 0.76 -0.1
581,538 - IAI46_02690 0.81 -0.3
581,540 - IAI46_02690 0.82 +0.6
581,572 + IAI46_02690 0.87 +0.4
581,573 - IAI46_02690 0.87 -0.2
581,573 - IAI46_02690 0.87 +0.3
581,573 - IAI46_02690 0.87 +0.6
581,630 + -0.5
581,631 - +0.2
581,715 - +0.6
581,722 + +0.5
581,729 - +1.0
581,755 + -0.4
581,790 + -0.7
581,790 + -0.1
581,794 + -1.0
581,794 + +0.0
581,795 - +0.0

Or see this region's nucleotide sequence