Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01620 and IAI46_01625 are separated by 114 nucleotides IAI46_01625 and IAI46_01630 are separated by 95 nucleotides IAI46_01630 and IAI46_01635 are separated by 68 nucleotides
IAI46_01620: IAI46_01620 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 355,659 to 356,600
_01620
IAI46_01625: IAI46_01625 - RNA chaperone Hfq, at 356,715 to 357,023
_01625
IAI46_01630: IAI46_01630 - GTPase HflX, at 357,119 to 358,399
_01630
IAI46_01635: IAI46_01635 - FtsH protease activity modulator HflK, at 358,468 to 359,727
_01635
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 356.427 kb on + strand, within IAI46_01620 at 356.427 kb on + strand, within IAI46_01620 at 356.427 kb on + strand, within IAI46_01620 at 356.427 kb on + strand, within IAI46_01620 at 356.428 kb on - strand, within IAI46_01620 at 356.431 kb on + strand, within IAI46_01620 at 356.431 kb on + strand, within IAI46_01620 at 356.464 kb on - strand, within IAI46_01620 at 356.472 kb on - strand, within IAI46_01620 at 356.533 kb on + strand at 356.581 kb on + strand at 356.591 kb on + strand at 356.592 kb on - strand at 356.598 kb on + strand at 356.598 kb on + strand at 356.599 kb on - strand at 356.599 kb on - strand at 356.599 kb on - strand at 356.679 kb on + strand at 356.679 kb on + strand at 356.679 kb on + strand at 356.700 kb on + strand at 356.711 kb on + strand at 356.721 kb on - strand at 356.787 kb on + strand, within IAI46_01625 at 356.788 kb on - strand, within IAI46_01625 at 356.801 kb on + strand, within IAI46_01625 at 356.879 kb on + strand, within IAI46_01625 at 356.879 kb on + strand, within IAI46_01625 at 356.888 kb on + strand, within IAI46_01625 at 356.927 kb on + strand, within IAI46_01625 at 356.927 kb on + strand, within IAI46_01625 at 356.927 kb on + strand, within IAI46_01625 at 356.928 kb on - strand, within IAI46_01625 at 356.928 kb on - strand, within IAI46_01625 at 356.928 kb on - strand, within IAI46_01625 at 356.954 kb on + strand, within IAI46_01625 at 356.954 kb on + strand, within IAI46_01625 at 356.954 kb on + strand, within IAI46_01625 at 356.959 kb on - strand, within IAI46_01625 at 356.970 kb on - strand, within IAI46_01625 at 357.021 kb on + strand at 357.057 kb on - strand at 357.075 kb on + strand at 357.075 kb on + strand at 357.076 kb on - strand at 357.076 kb on - strand at 357.131 kb on + strand at 357.132 kb on - strand at 357.163 kb on + strand at 357.164 kb on - strand at 357.164 kb on - strand at 357.164 kb on - strand at 357.164 kb on - strand at 357.164 kb on - strand at 357.164 kb on - strand at 357.164 kb on - strand at 357.164 kb on - strand at 357.167 kb on + strand at 357.167 kb on + strand at 357.168 kb on - strand at 357.284 kb on + strand, within IAI46_01630 at 357.285 kb on - strand, within IAI46_01630 at 357.285 kb on - strand, within IAI46_01630 at 357.285 kb on - strand, within IAI46_01630 at 357.441 kb on + strand, within IAI46_01630 at 357.478 kb on + strand, within IAI46_01630 at 357.478 kb on + strand, within IAI46_01630 at 357.479 kb on - strand, within IAI46_01630 at 357.489 kb on + strand, within IAI46_01630 at 357.490 kb on - strand, within IAI46_01630 at 357.511 kb on + strand, within IAI46_01630 at 357.512 kb on - strand, within IAI46_01630 at 357.597 kb on + strand, within IAI46_01630 at 357.631 kb on + strand, within IAI46_01630 at 357.632 kb on - strand, within IAI46_01630 at 357.632 kb on - strand, within IAI46_01630 at 357.632 kb on - strand, within IAI46_01630 at 357.643 kb on - strand, within IAI46_01630 at 357.664 kb on + strand, within IAI46_01630 at 357.665 kb on - strand, within IAI46_01630 at 357.665 kb on - strand, within IAI46_01630 at 357.726 kb on + strand, within IAI46_01630 at 357.731 kb on + strand, within IAI46_01630 at 357.732 kb on - strand, within IAI46_01630 at 357.732 kb on - strand, within IAI46_01630 at 357.733 kb on + strand, within IAI46_01630 at 357.733 kb on + strand, within IAI46_01630 at 357.785 kb on + strand, within IAI46_01630 at 357.785 kb on + strand, within IAI46_01630 at 357.786 kb on - strand, within IAI46_01630 at 357.786 kb on - strand, within IAI46_01630 at 357.801 kb on + strand, within IAI46_01630 at 357.820 kb on + strand, within IAI46_01630 at 357.876 kb on + strand, within IAI46_01630 at 357.877 kb on - strand, within IAI46_01630 at 357.960 kb on + strand, within IAI46_01630 at 357.960 kb on + strand, within IAI46_01630 at 357.966 kb on + strand, within IAI46_01630 at 357.967 kb on - strand, within IAI46_01630 at 357.983 kb on - strand, within IAI46_01630 at 358.015 kb on + strand, within IAI46_01630 at 358.059 kb on + strand, within IAI46_01630 at 358.060 kb on - strand, within IAI46_01630 at 358.074 kb on + strand, within IAI46_01630 at 358.074 kb on + strand, within IAI46_01630 at 358.075 kb on - strand, within IAI46_01630 at 358.075 kb on - strand, within IAI46_01630 at 358.075 kb on - strand, within IAI46_01630 at 358.078 kb on + strand, within IAI46_01630 at 358.078 kb on + strand, within IAI46_01630 at 358.078 kb on + strand, within IAI46_01630 at 358.079 kb on - strand, within IAI46_01630 at 358.079 kb on - strand, within IAI46_01630 at 358.079 kb on - strand, within IAI46_01630 at 358.103 kb on - strand, within IAI46_01630 at 358.178 kb on + strand, within IAI46_01630 at 358.179 kb on - strand, within IAI46_01630 at 358.179 kb on - strand, within IAI46_01630 at 358.220 kb on + strand, within IAI46_01630 at 358.329 kb on + strand at 358.329 kb on + strand at 358.329 kb on + strand at 358.329 kb on + strand at 358.330 kb on - strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.333 kb on + strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.334 kb on - strand at 358.339 kb on + strand at 358.339 kb on + strand at 358.384 kb on + strand at 358.385 kb on - strand at 358.390 kb on + strand at 358.390 kb on + strand at 358.391 kb on - strand at 358.391 kb on - strand at 358.391 kb on - strand at 358.392 kb on + strand at 358.392 kb on + strand at 358.392 kb on + strand at 358.393 kb on - strand at 358.393 kb on - strand at 358.395 kb on + strand at 358.395 kb on + strand at 358.395 kb on + strand at 358.395 kb on + strand at 358.395 kb on + strand at 358.395 kb on + strand at 358.395 kb on + strand at 358.395 kb on + strand at 358.404 kb on - strand at 358.454 kb on + strand at 358.455 kb on - strand at 358.455 kb on - strand at 358.463 kb on - strand at 358.528 kb on - strand at 358.554 kb on + strand at 358.554 kb on + strand at 358.554 kb on + strand at 358.555 kb on - strand at 358.596 kb on + strand, within IAI46_01635 at 358.596 kb on + strand, within IAI46_01635 at 358.596 kb on + strand, within IAI46_01635 at 358.597 kb on - strand, within IAI46_01635 at 358.659 kb on + strand, within IAI46_01635 at 358.659 kb on + strand, within IAI46_01635 at 358.731 kb on - strand, within IAI46_01635 at 358.760 kb on - strand, within IAI46_01635 at 358.934 kb on + strand, within IAI46_01635 at 358.934 kb on + strand, within IAI46_01635 at 358.934 kb on + strand, within IAI46_01635 at 358.934 kb on + strand, within IAI46_01635 at 358.934 kb on + strand, within IAI46_01635 at 358.935 kb on - strand, within IAI46_01635 at 358.984 kb on + strand, within IAI46_01635 at 358.984 kb on + strand, within IAI46_01635 at 358.985 kb on - strand, within IAI46_01635 at 358.985 kb on - strand, within IAI46_01635 at 358.985 kb on - strand, within IAI46_01635 at 359.062 kb on + strand, within IAI46_01635 at 359.062 kb on + strand, within IAI46_01635 at 359.062 kb on + strand, within IAI46_01635 at 359.062 kb on + strand, within IAI46_01635 at 359.062 kb on + strand, within IAI46_01635 at 359.063 kb on - strand, within IAI46_01635 at 359.063 kb on - strand, within IAI46_01635 at 359.095 kb on - strand, within IAI46_01635 at 359.136 kb on + strand, within IAI46_01635 at 359.146 kb on + strand, within IAI46_01635 at 359.146 kb on + strand, within IAI46_01635 at 359.146 kb on + strand, within IAI46_01635 at 359.147 kb on - strand, within IAI46_01635 at 359.257 kb on + strand, within IAI46_01635 at 359.257 kb on + strand, within IAI46_01635 at 359.257 kb on + strand, within IAI46_01635 at 359.257 kb on + strand, within IAI46_01635 at 359.257 kb on + strand, within IAI46_01635 at 359.258 kb on - strand, within IAI46_01635 at 359.345 kb on - strand, within IAI46_01635 at 359.346 kb on + strand, within IAI46_01635 at 359.346 kb on + strand, within IAI46_01635 at 359.346 kb on + strand, within IAI46_01635 at 359.347 kb on - strand, within IAI46_01635 at 359.356 kb on - strand, within IAI46_01635
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 356,427 + IAI46_01620 0.82 -0.7 356,427 + IAI46_01620 0.82 -0.3 356,427 + IAI46_01620 0.82 +0.5 356,427 + IAI46_01620 0.82 -0.2 356,428 - IAI46_01620 0.82 -0.5 356,431 + IAI46_01620 0.82 -0.0 356,431 + IAI46_01620 0.82 +0.1 356,464 - IAI46_01620 0.85 +1.6 356,472 - IAI46_01620 0.86 +0.1 356,533 + +1.7 356,581 + -0.1 356,591 + +0.5 356,592 - -0.3 356,598 + +1.1 356,598 + -2.1 356,599 - -1.1 356,599 - +0.5 356,599 - -1.7 356,679 + -0.4 356,679 + +0.1 356,679 + -0.3 356,700 + -1.6 356,711 + -1.0 356,721 - -0.9 356,787 + IAI46_01625 0.23 +0.5 356,788 - IAI46_01625 0.24 +2.1 356,801 + IAI46_01625 0.28 -0.2 356,879 + IAI46_01625 0.53 +1.1 356,879 + IAI46_01625 0.53 +0.2 356,888 + IAI46_01625 0.56 -0.3 356,927 + IAI46_01625 0.69 +0.5 356,927 + IAI46_01625 0.69 +0.3 356,927 + IAI46_01625 0.69 +0.3 356,928 - IAI46_01625 0.69 +1.6 356,928 - IAI46_01625 0.69 +0.8 356,928 - IAI46_01625 0.69 +0.1 356,954 + IAI46_01625 0.77 +0.4 356,954 + IAI46_01625 0.77 -0.9 356,954 + IAI46_01625 0.77 +0.3 356,959 - IAI46_01625 0.79 -0.4 356,970 - IAI46_01625 0.83 +0.1 357,021 + -0.5 357,057 - +0.3 357,075 + -1.1 357,075 + -1.2 357,076 - +0.5 357,076 - -0.2 357,131 + +0.6 357,132 - +0.5 357,163 + -0.0 357,164 - +0.1 357,164 - +0.7 357,164 - +0.6 357,164 - -1.1 357,164 - +2.5 357,164 - -0.3 357,164 - -0.1 357,164 - +0.7 357,167 + -1.1 357,167 + +0.2 357,168 - -1.3 357,284 + IAI46_01630 0.13 +0.2 357,285 - IAI46_01630 0.13 -0.4 357,285 - IAI46_01630 0.13 +0.3 357,285 - IAI46_01630 0.13 -0.9 357,441 + IAI46_01630 0.25 +1.0 357,478 + IAI46_01630 0.28 +1.7 357,478 + IAI46_01630 0.28 -0.2 357,479 - IAI46_01630 0.28 -0.5 357,489 + IAI46_01630 0.29 +0.4 357,490 - IAI46_01630 0.29 +0.9 357,511 + IAI46_01630 0.31 -0.2 357,512 - IAI46_01630 0.31 -0.6 357,597 + IAI46_01630 0.37 -2.1 357,631 + IAI46_01630 0.40 -0.0 357,632 - IAI46_01630 0.40 +1.5 357,632 - IAI46_01630 0.40 +1.2 357,632 - IAI46_01630 0.40 -0.2 357,643 - IAI46_01630 0.41 -0.1 357,664 + IAI46_01630 0.43 -0.1 357,665 - IAI46_01630 0.43 -0.2 357,665 - IAI46_01630 0.43 +0.2 357,726 + IAI46_01630 0.47 -0.0 357,731 + IAI46_01630 0.48 +0.1 357,732 - IAI46_01630 0.48 -0.8 357,732 - IAI46_01630 0.48 +0.4 357,733 + IAI46_01630 0.48 +0.2 357,733 + IAI46_01630 0.48 +0.2 357,785 + IAI46_01630 0.52 +0.3 357,785 + IAI46_01630 0.52 +0.1 357,786 - IAI46_01630 0.52 -0.6 357,786 - IAI46_01630 0.52 +0.7 357,801 + IAI46_01630 0.53 -0.6 357,820 + IAI46_01630 0.55 +0.3 357,876 + IAI46_01630 0.59 +0.1 357,877 - IAI46_01630 0.59 -0.3 357,960 + IAI46_01630 0.66 +0.8 357,960 + IAI46_01630 0.66 +0.6 357,966 + IAI46_01630 0.66 +0.1 357,967 - IAI46_01630 0.66 +0.4 357,983 - IAI46_01630 0.67 -1.4 358,015 + IAI46_01630 0.70 +0.3 358,059 + IAI46_01630 0.73 +0.3 358,060 - IAI46_01630 0.73 -0.5 358,074 + IAI46_01630 0.75 +0.0 358,074 + IAI46_01630 0.75 +0.6 358,075 - IAI46_01630 0.75 +0.5 358,075 - IAI46_01630 0.75 -1.4 358,075 - IAI46_01630 0.75 +0.5 358,078 + IAI46_01630 0.75 +0.0 358,078 + IAI46_01630 0.75 +0.4 358,078 + IAI46_01630 0.75 +0.2 358,079 - IAI46_01630 0.75 -0.2 358,079 - IAI46_01630 0.75 +1.3 358,079 - IAI46_01630 0.75 +0.7 358,103 - IAI46_01630 0.77 -0.1 358,178 + IAI46_01630 0.83 +1.2 358,179 - IAI46_01630 0.83 -0.2 358,179 - IAI46_01630 0.83 +0.5 358,220 + IAI46_01630 0.86 -0.0 358,329 + -0.1 358,329 + +0.5 358,329 + -0.2 358,329 + +0.5 358,330 - +1.5 358,333 + +1.0 358,333 + -0.6 358,333 + -1.2 358,333 + +0.0 358,333 + -0.9 358,333 + +1.0 358,333 + +1.1 358,333 + +1.1 358,333 + +0.3 358,333 + +0.3 358,333 + -1.0 358,333 + -1.3 358,334 - -0.7 358,334 - +1.3 358,334 - +0.6 358,334 - -0.3 358,334 - +0.8 358,334 - -0.7 358,334 - +0.5 358,334 - +1.0 358,334 - -0.3 358,334 - -0.3 358,334 - -0.0 358,334 - -0.1 358,339 + -0.4 358,339 + +0.1 358,384 + -0.1 358,385 - -0.4 358,390 + -0.6 358,390 + -0.3 358,391 - -0.2 358,391 - +0.3 358,391 - +1.1 358,392 + +0.1 358,392 + +0.1 358,392 + +1.1 358,393 - -0.2 358,393 - +0.1 358,395 + -0.4 358,395 + +0.6 358,395 + -0.1 358,395 + +0.6 358,395 + +0.8 358,395 + -0.1 358,395 + -1.2 358,395 + +0.2 358,404 - -1.0 358,454 + +0.4 358,455 - +0.8 358,455 - -0.3 358,463 - +0.5 358,528 - +0.1 358,554 + +0.1 358,554 + -1.1 358,554 + +0.2 358,555 - -1.2 358,596 + IAI46_01635 0.10 +1.1 358,596 + IAI46_01635 0.10 +0.8 358,596 + IAI46_01635 0.10 +0.6 358,597 - IAI46_01635 0.10 +0.3 358,659 + IAI46_01635 0.15 +0.4 358,659 + IAI46_01635 0.15 +0.2 358,731 - IAI46_01635 0.21 +0.2 358,760 - IAI46_01635 0.23 -0.5 358,934 + IAI46_01635 0.37 -0.7 358,934 + IAI46_01635 0.37 +0.8 358,934 + IAI46_01635 0.37 +0.5 358,934 + IAI46_01635 0.37 +0.5 358,934 + IAI46_01635 0.37 -0.5 358,935 - IAI46_01635 0.37 -0.1 358,984 + IAI46_01635 0.41 +0.9 358,984 + IAI46_01635 0.41 +0.2 358,985 - IAI46_01635 0.41 +0.6 358,985 - IAI46_01635 0.41 +0.9 358,985 - IAI46_01635 0.41 +0.1 359,062 + IAI46_01635 0.47 +0.4 359,062 + IAI46_01635 0.47 -0.1 359,062 + IAI46_01635 0.47 -0.1 359,062 + IAI46_01635 0.47 -0.4 359,062 + IAI46_01635 0.47 +0.2 359,063 - IAI46_01635 0.47 +0.3 359,063 - IAI46_01635 0.47 +0.7 359,095 - IAI46_01635 0.50 +0.3 359,136 + IAI46_01635 0.53 -1.2 359,146 + IAI46_01635 0.54 +0.2 359,146 + IAI46_01635 0.54 -0.2 359,146 + IAI46_01635 0.54 +0.0 359,147 - IAI46_01635 0.54 +1.1 359,257 + IAI46_01635 0.63 -1.8 359,257 + IAI46_01635 0.63 +0.9 359,257 + IAI46_01635 0.63 +1.0 359,257 + IAI46_01635 0.63 -0.3 359,257 + IAI46_01635 0.63 -0.3 359,258 - IAI46_01635 0.63 -0.4 359,345 - IAI46_01635 0.70 -0.8 359,346 + IAI46_01635 0.70 +0.5 359,346 + IAI46_01635 0.70 +0.9 359,346 + IAI46_01635 0.70 +0.5 359,347 - IAI46_01635 0.70 +0.1 359,356 - IAI46_01635 0.70 +0.1
Or see this region's nucleotide sequence