Strain Fitness in Serratia liquefaciens MT49 around IAI46_01030

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01025 and IAI46_01030 are separated by 32 nucleotidesIAI46_01030 and IAI46_01035 are separated by 90 nucleotides IAI46_01025: IAI46_01025 - DMT family transporter, at 228,246 to 229,109 _01025 IAI46_01030: IAI46_01030 - HTH-type transcriptional regulator MetR, at 229,142 to 230,092 _01030 IAI46_01035: IAI46_01035 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 230,183 to 232,474 _01035 Position (kb) 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 228.170 kb on + strandat 228.171 kb on - strandat 228.208 kb on + strandat 228.231 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.263 kb on + strandat 228.264 kb on - strandat 228.266 kb on + strandat 228.266 kb on + strandat 228.266 kb on + strandat 228.267 kb on - strandat 228.267 kb on - strandat 228.267 kb on - strandat 228.306 kb on + strandat 228.306 kb on + strandat 228.307 kb on - strandat 228.423 kb on + strand, within IAI46_01025at 228.423 kb on + strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.424 kb on - strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.448 kb on + strand, within IAI46_01025at 228.449 kb on - strand, within IAI46_01025at 228.449 kb on - strand, within IAI46_01025at 228.449 kb on - strand, within IAI46_01025at 228.459 kb on + strand, within IAI46_01025at 228.459 kb on + strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.460 kb on - strand, within IAI46_01025at 228.480 kb on + strand, within IAI46_01025at 228.480 kb on + strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.481 kb on - strand, within IAI46_01025at 228.486 kb on + strand, within IAI46_01025at 228.486 kb on + strand, within IAI46_01025at 228.486 kb on + strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.487 kb on - strand, within IAI46_01025at 228.516 kb on - strand, within IAI46_01025at 228.534 kb on + strand, within IAI46_01025at 228.535 kb on - strand, within IAI46_01025at 228.535 kb on - strand, within IAI46_01025at 228.550 kb on - strand, within IAI46_01025at 228.585 kb on + strand, within IAI46_01025at 228.585 kb on + strand, within IAI46_01025at 228.586 kb on - strand, within IAI46_01025at 228.586 kb on - strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.589 kb on + strand, within IAI46_01025at 228.590 kb on - strand, within IAI46_01025at 228.590 kb on - strand, within IAI46_01025at 228.590 kb on - strand, within IAI46_01025at 228.602 kb on - strand, within IAI46_01025at 228.634 kb on - strand, within IAI46_01025at 228.774 kb on + strand, within IAI46_01025at 228.774 kb on + strand, within IAI46_01025at 228.775 kb on - strand, within IAI46_01025at 228.775 kb on - strand, within IAI46_01025at 228.846 kb on - strand, within IAI46_01025at 228.880 kb on + strand, within IAI46_01025at 228.881 kb on - strand, within IAI46_01025at 228.901 kb on - strand, within IAI46_01025at 228.957 kb on + strand, within IAI46_01025at 228.959 kb on + strand, within IAI46_01025at 228.959 kb on + strand, within IAI46_01025at 228.960 kb on - strand, within IAI46_01025at 228.960 kb on - strand, within IAI46_01025at 229.096 kb on + strandat 229.140 kb on - strandat 229.436 kb on - strand, within IAI46_01030at 229.604 kb on + strand, within IAI46_01030at 229.630 kb on - strand, within IAI46_01030at 229.877 kb on + strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.919 kb on - strand, within IAI46_01030at 230.072 kb on + strandat 230.072 kb on + strandat 230.073 kb on - strandat 230.073 kb on - strandat 230.118 kb on + strandat 230.135 kb on + strandat 230.136 kb on - strandat 230.138 kb on + strandat 230.138 kb on + strandat 230.138 kb on + strandat 230.138 kb on + strandat 230.138 kb on + strandat 230.143 kb on + strandat 230.144 kb on - strandat 230.144 kb on - strandat 230.154 kb on + strandat 230.164 kb on + strandat 230.164 kb on + strandat 230.165 kb on - strandat 230.191 kb on + strandat 230.191 kb on + strandat 230.192 kb on - strandat 230.241 kb on + strandat 230.242 kb on - strandat 230.396 kb on + strandat 230.397 kb on - strandat 230.397 kb on - strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.407 kb on - strandat 230.407 kb on - strandat 230.407 kb on - strandat 230.484 kb on + strand, within IAI46_01035at 230.484 kb on + strand, within IAI46_01035at 230.485 kb on - strand, within IAI46_01035at 230.485 kb on - strand, within IAI46_01035at 230.485 kb on - strand, within IAI46_01035at 230.564 kb on + strand, within IAI46_01035at 230.564 kb on + strand, within IAI46_01035at 230.565 kb on - strand, within IAI46_01035at 230.565 kb on - strand, within IAI46_01035at 230.565 kb on - strand, within IAI46_01035at 230.570 kb on + strand, within IAI46_01035at 230.570 kb on + strand, within IAI46_01035at 230.570 kb on + strand, within IAI46_01035at 230.570 kb on + strand, within IAI46_01035at 230.570 kb on + strand, within IAI46_01035at 230.571 kb on - strand, within IAI46_01035at 230.571 kb on - strand, within IAI46_01035at 230.571 kb on - strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.697 kb on - strand, within IAI46_01035at 230.697 kb on - strand, within IAI46_01035at 230.697 kb on - strand, within IAI46_01035at 230.697 kb on - strand, within IAI46_01035at 230.769 kb on - strand, within IAI46_01035at 230.814 kb on + strand, within IAI46_01035at 230.904 kb on + strand, within IAI46_01035at 230.905 kb on - strand, within IAI46_01035at 230.924 kb on + strand, within IAI46_01035at 230.924 kb on + strand, within IAI46_01035at 230.924 kb on + strand, within IAI46_01035at 230.925 kb on - strand, within IAI46_01035at 230.925 kb on - strand, within IAI46_01035at 230.925 kb on - strand, within IAI46_01035at 230.944 kb on + strand, within IAI46_01035

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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228,170 + -0.5
228,171 - +0.2
228,208 + -0.1
228,231 + +0.1
228,263 + +0.9
228,263 + +0.4
228,263 + +0.1
228,263 + -0.9
228,263 + +0.3
228,263 + +0.7
228,264 - +0.3
228,266 + +0.3
228,266 + -0.0
228,266 + -0.7
228,267 - -1.5
228,267 - +0.1
228,267 - +0.2
228,306 + +2.1
228,306 + +1.5
228,307 - +0.5
228,423 + IAI46_01025 0.20 -0.9
228,423 + IAI46_01025 0.20 +1.3
228,424 - IAI46_01025 0.21 -0.4
228,424 - IAI46_01025 0.21 +0.4
228,424 - IAI46_01025 0.21 -0.6
228,424 - IAI46_01025 0.21 -0.0
228,424 - IAI46_01025 0.21 +0.0
228,424 - IAI46_01025 0.21 +0.3
228,448 + IAI46_01025 0.23 -0.6
228,448 + IAI46_01025 0.23 -0.7
228,448 + IAI46_01025 0.23 +0.2
228,448 + IAI46_01025 0.23 +0.4
228,449 - IAI46_01025 0.23 +0.1
228,449 - IAI46_01025 0.23 +0.8
228,449 - IAI46_01025 0.23 -0.3
228,459 + IAI46_01025 0.25 -0.5
228,459 + IAI46_01025 0.25 -1.0
228,460 - IAI46_01025 0.25 -0.2
228,460 - IAI46_01025 0.25 +0.0
228,460 - IAI46_01025 0.25 +0.2
228,460 - IAI46_01025 0.25 +0.6
228,460 - IAI46_01025 0.25 +0.2
228,480 + IAI46_01025 0.27 +0.0
228,480 + IAI46_01025 0.27 -0.5
228,481 - IAI46_01025 0.27 -0.3
228,481 - IAI46_01025 0.27 -1.0
228,481 - IAI46_01025 0.27 -0.3
228,481 - IAI46_01025 0.27 +1.1
228,481 - IAI46_01025 0.27 +0.2
228,481 - IAI46_01025 0.27 -0.8
228,486 + IAI46_01025 0.28 -0.4
228,486 + IAI46_01025 0.28 +0.0
228,486 + IAI46_01025 0.28 -0.3
228,487 - IAI46_01025 0.28 +0.0
228,487 - IAI46_01025 0.28 -0.8
228,487 - IAI46_01025 0.28 -2.0
228,487 - IAI46_01025 0.28 +0.4
228,516 - IAI46_01025 0.31 +0.2
228,534 + IAI46_01025 0.33 +0.6
228,535 - IAI46_01025 0.33 -0.2
228,535 - IAI46_01025 0.33 +0.2
228,550 - IAI46_01025 0.35 +0.7
228,585 + IAI46_01025 0.39 -0.0
228,585 + IAI46_01025 0.39 +1.0
228,586 - IAI46_01025 0.39 +1.0
228,586 - IAI46_01025 0.39 -0.6
228,589 + IAI46_01025 0.40 +0.6
228,589 + IAI46_01025 0.40 -0.7
228,589 + IAI46_01025 0.40 +0.7
228,589 + IAI46_01025 0.40 -1.4
228,589 + IAI46_01025 0.40 +0.0
228,589 + IAI46_01025 0.40 -0.2
228,589 + IAI46_01025 0.40 +0.0
228,589 + IAI46_01025 0.40 +0.8
228,590 - IAI46_01025 0.40 -0.4
228,590 - IAI46_01025 0.40 +0.2
228,590 - IAI46_01025 0.40 -0.6
228,602 - IAI46_01025 0.41 -0.4
228,634 - IAI46_01025 0.45 -0.1
228,774 + IAI46_01025 0.61 -0.1
228,774 + IAI46_01025 0.61 +1.6
228,775 - IAI46_01025 0.61 +0.0
228,775 - IAI46_01025 0.61 +0.2
228,846 - IAI46_01025 0.69 +0.1
228,880 + IAI46_01025 0.73 -0.4
228,881 - IAI46_01025 0.73 -0.1
228,901 - IAI46_01025 0.76 -0.1
228,957 + IAI46_01025 0.82 +0.0
228,959 + IAI46_01025 0.83 +0.0
228,959 + IAI46_01025 0.83 -0.0
228,960 - IAI46_01025 0.83 +0.2
228,960 - IAI46_01025 0.83 +0.1
229,096 + +0.5
229,140 - +0.2
229,436 - IAI46_01030 0.31 -0.6
229,604 + IAI46_01030 0.49 -0.1
229,630 - IAI46_01030 0.51 -0.1
229,877 + IAI46_01030 0.77 +0.4
229,878 - IAI46_01030 0.77 -0.0
229,878 - IAI46_01030 0.77 -0.9
229,878 - IAI46_01030 0.77 +0.4
229,878 - IAI46_01030 0.77 -1.0
229,878 - IAI46_01030 0.77 -0.5
229,878 - IAI46_01030 0.77 -0.6
229,919 - IAI46_01030 0.82 -0.6
230,072 + +0.2
230,072 + -1.3
230,073 - -0.2
230,073 - -0.8
230,118 + +0.4
230,135 + +1.6
230,136 - -0.0
230,138 + -0.5
230,138 + +0.2
230,138 + -0.0
230,138 + +0.1
230,138 + -0.3
230,143 + +0.6
230,144 - -0.5
230,144 - -0.3
230,154 + +0.3
230,164 + -0.7
230,164 + -0.2
230,165 - -1.3
230,191 + +1.2
230,191 + -0.0
230,192 - +1.2
230,241 + -0.8
230,242 - +0.0
230,396 + -0.0
230,397 - -0.9
230,397 - -0.0
230,406 + -0.6
230,406 + +0.0
230,406 + -0.9
230,406 + -0.5
230,406 + +1.1
230,406 + -0.3
230,406 + -0.5
230,407 - -0.7
230,407 - -0.9
230,407 - +2.2
230,484 + IAI46_01035 0.13 -0.4
230,484 + IAI46_01035 0.13 -3.1
230,485 - IAI46_01035 0.13 -0.9
230,485 - IAI46_01035 0.13 +0.0
230,485 - IAI46_01035 0.13 -0.8
230,564 + IAI46_01035 0.17 -1.1
230,564 + IAI46_01035 0.17 +2.1
230,565 - IAI46_01035 0.17 -0.6
230,565 - IAI46_01035 0.17 -0.4
230,565 - IAI46_01035 0.17 -2.7
230,570 + IAI46_01035 0.17 -1.2
230,570 + IAI46_01035 0.17 -1.3
230,570 + IAI46_01035 0.17 -0.7
230,570 + IAI46_01035 0.17 -0.2
230,570 + IAI46_01035 0.17 -2.2
230,571 - IAI46_01035 0.17 -0.6
230,571 - IAI46_01035 0.17 -0.8
230,571 - IAI46_01035 0.17 +0.5
230,696 + IAI46_01035 0.22 +0.5
230,696 + IAI46_01035 0.22 -1.4
230,696 + IAI46_01035 0.22 -0.6
230,696 + IAI46_01035 0.22 -1.1
230,696 + IAI46_01035 0.22 -0.2
230,696 + IAI46_01035 0.22 +0.1
230,696 + IAI46_01035 0.22 -0.0
230,697 - IAI46_01035 0.22 -0.8
230,697 - IAI46_01035 0.22 -0.3
230,697 - IAI46_01035 0.22 +0.5
230,697 - IAI46_01035 0.22 -0.1
230,769 - IAI46_01035 0.26 -1.3
230,814 + IAI46_01035 0.28 +0.1
230,904 + IAI46_01035 0.31 -0.5
230,905 - IAI46_01035 0.32 -0.4
230,924 + IAI46_01035 0.32 -0.7
230,924 + IAI46_01035 0.32 -0.1
230,924 + IAI46_01035 0.32 -0.4
230,925 - IAI46_01035 0.32 -0.2
230,925 - IAI46_01035 0.32 +0.3
230,925 - IAI46_01035 0.32 +0.1
230,944 + IAI46_01035 0.33 -0.3

Or see this region's nucleotide sequence