Strain Fitness in Serratia liquefaciens MT49 around IAI46_01000

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00995 and IAI46_01000 overlap by 4 nucleotidesIAI46_01000 and IAI46_01005 are separated by 16 nucleotides IAI46_00995: IAI46_00995 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 223,158 to 224,045 _00995 IAI46_01000: IAI46_01000 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 224,042 to 224,887 _01000 IAI46_01005: IAI46_01005 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 224,904 to 225,980 _01005 Position (kb) 224 225Strain fitness (log2 ratio) -1 0 1 2at 223.056 kb on + strandat 223.056 kb on + strandat 223.056 kb on + strandat 223.056 kb on + strandat 223.057 kb on - strandat 223.057 kb on - strandat 223.057 kb on - strandat 223.057 kb on - strandat 223.097 kb on - strandat 223.154 kb on - strandat 223.201 kb on - strandat 223.201 kb on - strandat 223.201 kb on - strandat 223.201 kb on - strandat 223.201 kb on - strandat 223.201 kb on - strandat 223.208 kb on - strandat 223.208 kb on - strandat 223.229 kb on + strandat 223.356 kb on + strand, within IAI46_00995at 223.356 kb on + strand, within IAI46_00995at 223.356 kb on + strand, within IAI46_00995at 223.356 kb on + strand, within IAI46_00995at 223.357 kb on - strand, within IAI46_00995at 223.357 kb on - strand, within IAI46_00995at 223.357 kb on - strand, within IAI46_00995at 223.357 kb on - strand, within IAI46_00995at 223.359 kb on + strand, within IAI46_00995at 223.359 kb on + strand, within IAI46_00995at 223.374 kb on + strand, within IAI46_00995at 223.374 kb on + strand, within IAI46_00995at 223.375 kb on - strand, within IAI46_00995at 223.453 kb on - strand, within IAI46_00995at 223.453 kb on - strand, within IAI46_00995at 223.500 kb on + strand, within IAI46_00995at 223.501 kb on - strand, within IAI46_00995at 223.671 kb on + strand, within IAI46_00995at 223.671 kb on + strand, within IAI46_00995at 223.671 kb on + strand, within IAI46_00995at 223.673 kb on + strand, within IAI46_00995at 223.673 kb on + strand, within IAI46_00995at 223.673 kb on + strand, within IAI46_00995at 223.830 kb on + strand, within IAI46_00995at 223.830 kb on + strand, within IAI46_00995at 223.830 kb on + strand, within IAI46_00995at 223.831 kb on - strand, within IAI46_00995at 223.831 kb on - strand, within IAI46_00995at 223.831 kb on - strand, within IAI46_00995at 223.845 kb on - strand, within IAI46_00995at 223.885 kb on + strand, within IAI46_00995at 223.885 kb on + strand, within IAI46_00995at 223.908 kb on + strand, within IAI46_00995at 223.908 kb on + strand, within IAI46_00995at 223.909 kb on - strand, within IAI46_00995at 223.917 kb on + strand, within IAI46_00995at 224.027 kb on + strandat 224.027 kb on + strandat 224.028 kb on - strandat 224.083 kb on - strandat 224.083 kb on - strandat 224.083 kb on - strandat 224.083 kb on - strandat 224.123 kb on + strandat 224.123 kb on + strandat 224.124 kb on - strandat 224.124 kb on - strandat 224.221 kb on + strand, within IAI46_01000at 224.221 kb on + strand, within IAI46_01000at 224.222 kb on - strand, within IAI46_01000at 224.248 kb on + strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.339 kb on + strand, within IAI46_01000at 224.340 kb on - strand, within IAI46_01000at 224.340 kb on - strand, within IAI46_01000at 224.340 kb on - strand, within IAI46_01000at 224.340 kb on - strand, within IAI46_01000at 224.340 kb on - strand, within IAI46_01000at 224.351 kb on + strand, within IAI46_01000at 224.352 kb on - strand, within IAI46_01000at 224.372 kb on - strand, within IAI46_01000at 224.392 kb on - strand, within IAI46_01000at 224.425 kb on + strand, within IAI46_01000at 224.446 kb on + strand, within IAI46_01000at 224.473 kb on + strand, within IAI46_01000at 224.474 kb on + strand, within IAI46_01000at 224.474 kb on + strand, within IAI46_01000at 224.539 kb on + strand, within IAI46_01000at 224.539 kb on + strand, within IAI46_01000at 224.665 kb on + strand, within IAI46_01000at 224.684 kb on + strand, within IAI46_01000at 224.685 kb on - strand, within IAI46_01000at 224.815 kb on - strandat 224.940 kb on + strandat 224.940 kb on + strandat 224.941 kb on - strandat 224.941 kb on - strandat 224.949 kb on - strandat 224.949 kb on - strandat 225.087 kb on + strand, within IAI46_01005at 225.087 kb on + strand, within IAI46_01005at 225.088 kb on - strand, within IAI46_01005at 225.088 kb on - strand, within IAI46_01005at 225.088 kb on - strand, within IAI46_01005at 225.156 kb on + strand, within IAI46_01005at 225.156 kb on + strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.181 kb on + strand, within IAI46_01005at 225.181 kb on + strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.183 kb on + strand, within IAI46_01005at 225.183 kb on + strand, within IAI46_01005at 225.184 kb on - strand, within IAI46_01005at 225.184 kb on - strand, within IAI46_01005at 225.198 kb on + strand, within IAI46_01005at 225.199 kb on - strand, within IAI46_01005at 225.233 kb on + strand, within IAI46_01005at 225.233 kb on + strand, within IAI46_01005at 225.234 kb on - strand, within IAI46_01005at 225.234 kb on - strand, within IAI46_01005at 225.234 kb on - strand, within IAI46_01005at 225.348 kb on - strand, within IAI46_01005at 225.471 kb on + strand, within IAI46_01005at 225.472 kb on - strand, within IAI46_01005at 225.472 kb on - strand, within IAI46_01005at 225.472 kb on - strand, within IAI46_01005at 225.570 kb on + strand, within IAI46_01005at 225.570 kb on + strand, within IAI46_01005at 225.570 kb on + strand, within IAI46_01005at 225.571 kb on - strand, within IAI46_01005at 225.815 kb on - strand, within IAI46_01005at 225.815 kb on - strand, within IAI46_01005at 225.828 kb on - strand, within IAI46_01005

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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223,056 + -0.5
223,056 + -0.2
223,056 + -0.4
223,056 + -1.1
223,057 - +0.3
223,057 - +0.3
223,057 - +1.2
223,057 - +0.2
223,097 - +1.5
223,154 - +0.2
223,201 - +0.4
223,201 - -0.0
223,201 - +0.0
223,201 - +0.2
223,201 - -0.7
223,201 - -0.0
223,208 - +0.5
223,208 - +0.0
223,229 + +0.2
223,356 + IAI46_00995 0.22 -0.7
223,356 + IAI46_00995 0.22 -0.5
223,356 + IAI46_00995 0.22 -0.1
223,356 + IAI46_00995 0.22 -0.1
223,357 - IAI46_00995 0.22 -0.9
223,357 - IAI46_00995 0.22 +0.4
223,357 - IAI46_00995 0.22 +0.4
223,357 - IAI46_00995 0.22 -0.0
223,359 + IAI46_00995 0.23 +0.1
223,359 + IAI46_00995 0.23 -0.0
223,374 + IAI46_00995 0.24 -0.3
223,374 + IAI46_00995 0.24 +0.2
223,375 - IAI46_00995 0.24 -1.2
223,453 - IAI46_00995 0.33 +0.6
223,453 - IAI46_00995 0.33 -0.2
223,500 + IAI46_00995 0.39 +0.2
223,501 - IAI46_00995 0.39 -0.8
223,671 + IAI46_00995 0.58 +0.4
223,671 + IAI46_00995 0.58 +0.5
223,671 + IAI46_00995 0.58 +0.0
223,673 + IAI46_00995 0.58 +0.2
223,673 + IAI46_00995 0.58 -0.0
223,673 + IAI46_00995 0.58 +1.2
223,830 + IAI46_00995 0.76 +1.4
223,830 + IAI46_00995 0.76 -0.2
223,830 + IAI46_00995 0.76 +0.5
223,831 - IAI46_00995 0.76 +0.3
223,831 - IAI46_00995 0.76 +0.3
223,831 - IAI46_00995 0.76 -0.5
223,845 - IAI46_00995 0.77 +0.7
223,885 + IAI46_00995 0.82 -0.6
223,885 + IAI46_00995 0.82 +0.2
223,908 + IAI46_00995 0.84 -0.2
223,908 + IAI46_00995 0.84 -0.2
223,909 - IAI46_00995 0.85 +0.7
223,917 + IAI46_00995 0.85 -0.3
224,027 + +0.3
224,027 + -0.7
224,028 - -0.6
224,083 - +0.0
224,083 - -1.0
224,083 - -0.2
224,083 - -0.1
224,123 + +0.5
224,123 + +0.3
224,124 - +0.3
224,124 - +0.2
224,221 + IAI46_01000 0.21 -0.0
224,221 + IAI46_01000 0.21 +0.3
224,222 - IAI46_01000 0.21 +0.4
224,248 + IAI46_01000 0.24 -0.0
224,249 - IAI46_01000 0.24 +0.1
224,249 - IAI46_01000 0.24 -0.4
224,249 - IAI46_01000 0.24 -0.7
224,249 - IAI46_01000 0.24 +1.4
224,249 - IAI46_01000 0.24 +0.9
224,249 - IAI46_01000 0.24 -0.2
224,339 + IAI46_01000 0.35 +0.4
224,340 - IAI46_01000 0.35 +1.0
224,340 - IAI46_01000 0.35 +0.2
224,340 - IAI46_01000 0.35 -0.3
224,340 - IAI46_01000 0.35 -0.3
224,340 - IAI46_01000 0.35 +0.4
224,351 + IAI46_01000 0.37 -0.0
224,352 - IAI46_01000 0.37 +0.4
224,372 - IAI46_01000 0.39 -0.0
224,392 - IAI46_01000 0.41 -0.1
224,425 + IAI46_01000 0.45 +0.6
224,446 + IAI46_01000 0.48 +1.0
224,473 + IAI46_01000 0.51 -1.5
224,474 + IAI46_01000 0.51 -0.1
224,474 + IAI46_01000 0.51 +1.8
224,539 + IAI46_01000 0.59 +0.4
224,539 + IAI46_01000 0.59 -1.3
224,665 + IAI46_01000 0.74 +0.7
224,684 + IAI46_01000 0.76 +0.7
224,685 - IAI46_01000 0.76 +0.2
224,815 - +0.0
224,940 + +0.1
224,940 + -0.4
224,941 - +0.3
224,941 - +0.0
224,949 - +0.3
224,949 - +1.1
225,087 + IAI46_01005 0.17 +0.2
225,087 + IAI46_01005 0.17 +0.5
225,088 - IAI46_01005 0.17 +0.3
225,088 - IAI46_01005 0.17 -1.0
225,088 - IAI46_01005 0.17 +0.4
225,156 + IAI46_01005 0.23 +0.1
225,156 + IAI46_01005 0.23 +0.7
225,157 - IAI46_01005 0.23 -0.2
225,157 - IAI46_01005 0.23 +0.1
225,157 - IAI46_01005 0.23 -0.1
225,157 - IAI46_01005 0.23 +0.3
225,157 - IAI46_01005 0.23 +0.5
225,181 + IAI46_01005 0.26 +0.3
225,181 + IAI46_01005 0.26 +0.1
225,182 - IAI46_01005 0.26 +0.9
225,182 - IAI46_01005 0.26 +0.2
225,182 - IAI46_01005 0.26 +0.1
225,182 - IAI46_01005 0.26 +0.1
225,182 - IAI46_01005 0.26 +0.1
225,182 - IAI46_01005 0.26 +0.3
225,183 + IAI46_01005 0.26 -0.2
225,183 + IAI46_01005 0.26 -1.0
225,184 - IAI46_01005 0.26 -0.1
225,184 - IAI46_01005 0.26 +0.9
225,198 + IAI46_01005 0.27 +0.2
225,199 - IAI46_01005 0.27 +0.0
225,233 + IAI46_01005 0.31 -0.2
225,233 + IAI46_01005 0.31 -1.2
225,234 - IAI46_01005 0.31 -0.0
225,234 - IAI46_01005 0.31 +1.0
225,234 - IAI46_01005 0.31 -0.2
225,348 - IAI46_01005 0.41 -0.4
225,471 + IAI46_01005 0.53 -0.5
225,472 - IAI46_01005 0.53 +0.7
225,472 - IAI46_01005 0.53 +0.1
225,472 - IAI46_01005 0.53 +0.6
225,570 + IAI46_01005 0.62 +0.1
225,570 + IAI46_01005 0.62 +1.0
225,570 + IAI46_01005 0.62 +0.2
225,571 - IAI46_01005 0.62 +0.2
225,815 - IAI46_01005 0.85 +0.4
225,815 - IAI46_01005 0.85 +0.7
225,828 - IAI46_01005 0.86 +0.5

Or see this region's nucleotide sequence