Strain Fitness in Serratia liquefaciens MT49 around IAI46_00630

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00625 and IAI46_00630 are separated by 1 nucleotidesIAI46_00630 and IAI46_00635 overlap by 4 nucleotides IAI46_00625: IAI46_00625 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 147,515 to 148,645 _00625 IAI46_00630: IAI46_00630 - lipid III flippase WzxE, at 148,647 to 149,897 _00630 IAI46_00635: IAI46_00635 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 149,894 to 150,979 _00635 Position (kb) 148 149 150Strain fitness (log2 ratio) -2 -1 0 1 2 3at 147.963 kb on + strand, within IAI46_00625at 147.964 kb on - strand, within IAI46_00625at 147.995 kb on + strand, within IAI46_00625at 147.995 kb on + strand, within IAI46_00625at 147.996 kb on - strand, within IAI46_00625at 147.996 kb on - strand, within IAI46_00625at 147.996 kb on - strand, within IAI46_00625at 148.027 kb on + strand, within IAI46_00625at 148.039 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.186 kb on + strand, within IAI46_00625at 148.186 kb on + strand, within IAI46_00625at 148.186 kb on + strand, within IAI46_00625at 148.186 kb on + strand, within IAI46_00625at 148.187 kb on - strand, within IAI46_00625at 148.187 kb on - strand, within IAI46_00625at 148.211 kb on + strand, within IAI46_00625at 148.212 kb on - strand, within IAI46_00625at 148.239 kb on - strand, within IAI46_00625at 148.304 kb on + strand, within IAI46_00625at 148.304 kb on + strand, within IAI46_00625at 148.304 kb on + strand, within IAI46_00625at 148.304 kb on + strand, within IAI46_00625at 148.304 kb on + strand, within IAI46_00625at 148.305 kb on - strand, within IAI46_00625at 148.307 kb on + strand, within IAI46_00625at 148.307 kb on + strand, within IAI46_00625at 148.308 kb on - strand, within IAI46_00625at 148.379 kb on - strand, within IAI46_00625at 148.394 kb on + strand, within IAI46_00625at 148.395 kb on - strand, within IAI46_00625at 148.395 kb on - strand, within IAI46_00625at 148.411 kb on + strand, within IAI46_00625at 148.583 kb on + strandat 148.583 kb on + strandat 148.583 kb on + strandat 148.584 kb on - strandat 148.588 kb on + strandat 148.588 kb on + strandat 148.589 kb on - strandat 148.589 kb on - strandat 148.609 kb on + strandat 148.610 kb on - strandat 148.610 kb on - strandat 148.610 kb on - strandat 148.621 kb on + strandat 148.622 kb on - strandat 148.630 kb on + strandat 148.630 kb on + strandat 148.630 kb on + strandat 148.631 kb on - strandat 148.646 kb on + strandat 148.646 kb on + strandat 148.646 kb on + strandat 148.787 kb on + strand, within IAI46_00630at 148.839 kb on + strand, within IAI46_00630at 148.840 kb on - strand, within IAI46_00630at 148.840 kb on - strand, within IAI46_00630at 148.840 kb on - strand, within IAI46_00630at 148.843 kb on + strand, within IAI46_00630at 148.844 kb on - strand, within IAI46_00630at 148.844 kb on - strand, within IAI46_00630at 148.844 kb on - strand, within IAI46_00630at 148.852 kb on - strand, within IAI46_00630at 148.959 kb on - strand, within IAI46_00630at 148.959 kb on - strand, within IAI46_00630at 148.959 kb on - strand, within IAI46_00630at 148.989 kb on + strand, within IAI46_00630at 148.990 kb on - strand, within IAI46_00630at 149.018 kb on + strand, within IAI46_00630at 149.019 kb on - strand, within IAI46_00630at 149.051 kb on + strand, within IAI46_00630at 149.052 kb on - strand, within IAI46_00630at 149.133 kb on + strand, within IAI46_00630at 149.134 kb on - strand, within IAI46_00630at 149.134 kb on - strand, within IAI46_00630at 149.136 kb on + strand, within IAI46_00630at 149.137 kb on - strand, within IAI46_00630at 149.350 kb on - strand, within IAI46_00630at 149.350 kb on - strand, within IAI46_00630at 149.382 kb on + strand, within IAI46_00630at 149.470 kb on - strand, within IAI46_00630at 149.470 kb on - strand, within IAI46_00630at 149.481 kb on - strand, within IAI46_00630at 149.557 kb on + strand, within IAI46_00630at 149.584 kb on + strand, within IAI46_00630at 149.663 kb on - strand, within IAI46_00630at 149.672 kb on - strand, within IAI46_00630at 149.689 kb on - strand, within IAI46_00630at 149.689 kb on - strand, within IAI46_00630at 149.689 kb on - strand, within IAI46_00630at 149.689 kb on - strand, within IAI46_00630at 149.736 kb on - strand, within IAI46_00630at 149.827 kb on - strandat 149.827 kb on - strandat 149.862 kb on - strandat 149.880 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.913 kb on + strandat 150.011 kb on - strand, within IAI46_00635at 150.011 kb on - strand, within IAI46_00635at 150.164 kb on - strand, within IAI46_00635at 150.164 kb on - strand, within IAI46_00635at 150.164 kb on - strand, within IAI46_00635at 150.221 kb on - strand, within IAI46_00635at 150.221 kb on - strand, within IAI46_00635at 150.275 kb on + strand, within IAI46_00635at 150.275 kb on + strand, within IAI46_00635at 150.276 kb on - strand, within IAI46_00635at 150.334 kb on + strand, within IAI46_00635at 150.335 kb on - strand, within IAI46_00635at 150.337 kb on + strand, within IAI46_00635at 150.337 kb on + strand, within IAI46_00635at 150.337 kb on + strand, within IAI46_00635at 150.338 kb on - strand, within IAI46_00635at 150.344 kb on + strand, within IAI46_00635at 150.344 kb on + strand, within IAI46_00635at 150.344 kb on + strand, within IAI46_00635at 150.383 kb on + strand, within IAI46_00635at 150.384 kb on - strand, within IAI46_00635at 150.427 kb on - strand, within IAI46_00635at 150.494 kb on - strand, within IAI46_00635at 150.494 kb on - strand, within IAI46_00635at 150.581 kb on + strand, within IAI46_00635at 150.581 kb on + strand, within IAI46_00635at 150.582 kb on - strand, within IAI46_00635at 150.582 kb on - strand, within IAI46_00635at 150.582 kb on - strand, within IAI46_00635at 150.582 kb on - strand, within IAI46_00635at 150.583 kb on + strand, within IAI46_00635at 150.583 kb on + strand, within IAI46_00635at 150.584 kb on - strand, within IAI46_00635at 150.584 kb on - strand, within IAI46_00635at 150.594 kb on + strand, within IAI46_00635at 150.610 kb on - strand, within IAI46_00635at 150.676 kb on + strand, within IAI46_00635at 150.701 kb on + strand, within IAI46_00635at 150.701 kb on + strand, within IAI46_00635at 150.713 kb on - strand, within IAI46_00635at 150.729 kb on + strand, within IAI46_00635at 150.833 kb on + strand, within IAI46_00635at 150.834 kb on - strand, within IAI46_00635

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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147,963 + IAI46_00625 0.40 -0.4
147,964 - IAI46_00625 0.40 +0.6
147,995 + IAI46_00625 0.42 -0.3
147,995 + IAI46_00625 0.42 +0.6
147,996 - IAI46_00625 0.43 -0.1
147,996 - IAI46_00625 0.43 +1.3
147,996 - IAI46_00625 0.43 +2.1
148,027 + IAI46_00625 0.45 -1.3
148,039 + IAI46_00625 0.46 +1.4
148,184 + IAI46_00625 0.59 +1.0
148,184 + IAI46_00625 0.59 +1.2
148,184 + IAI46_00625 0.59 -1.3
148,184 + IAI46_00625 0.59 +0.8
148,184 + IAI46_00625 0.59 +1.7
148,184 + IAI46_00625 0.59 +0.4
148,185 - IAI46_00625 0.59 -0.2
148,185 - IAI46_00625 0.59 -0.9
148,185 - IAI46_00625 0.59 +2.0
148,185 - IAI46_00625 0.59 -1.2
148,185 - IAI46_00625 0.59 +1.9
148,185 - IAI46_00625 0.59 +0.6
148,185 - IAI46_00625 0.59 +0.7
148,186 + IAI46_00625 0.59 +1.3
148,186 + IAI46_00625 0.59 +0.4
148,186 + IAI46_00625 0.59 +2.6
148,186 + IAI46_00625 0.59 +0.6
148,187 - IAI46_00625 0.59 -0.1
148,187 - IAI46_00625 0.59 +1.4
148,211 + IAI46_00625 0.62 +1.1
148,212 - IAI46_00625 0.62 +1.7
148,239 - IAI46_00625 0.64 -0.1
148,304 + IAI46_00625 0.70 +2.2
148,304 + IAI46_00625 0.70 +0.1
148,304 + IAI46_00625 0.70 +0.7
148,304 + IAI46_00625 0.70 +0.9
148,304 + IAI46_00625 0.70 +1.5
148,305 - IAI46_00625 0.70 -0.2
148,307 + IAI46_00625 0.70 +0.3
148,307 + IAI46_00625 0.70 -0.6
148,308 - IAI46_00625 0.70 -0.6
148,379 - IAI46_00625 0.76 +0.8
148,394 + IAI46_00625 0.78 +0.2
148,395 - IAI46_00625 0.78 -0.3
148,395 - IAI46_00625 0.78 -0.0
148,411 + IAI46_00625 0.79 +1.3
148,583 + +0.3
148,583 + +1.1
148,583 + -0.1
148,584 - +1.3
148,588 + +1.4
148,588 + -0.4
148,589 - -0.3
148,589 - +2.6
148,609 + +0.4
148,610 - +1.7
148,610 - +0.1
148,610 - +1.4
148,621 + +1.3
148,622 - -0.3
148,630 + +0.2
148,630 + -0.5
148,630 + +0.9
148,631 - -1.1
148,646 + +0.7
148,646 + -1.4
148,646 + -0.0
148,787 + IAI46_00630 0.11 -0.1
148,839 + IAI46_00630 0.15 -1.1
148,840 - IAI46_00630 0.15 +0.7
148,840 - IAI46_00630 0.15 -0.2
148,840 - IAI46_00630 0.15 +1.6
148,843 + IAI46_00630 0.16 +0.6
148,844 - IAI46_00630 0.16 +1.6
148,844 - IAI46_00630 0.16 -0.2
148,844 - IAI46_00630 0.16 +0.8
148,852 - IAI46_00630 0.16 +1.0
148,959 - IAI46_00630 0.25 +0.7
148,959 - IAI46_00630 0.25 +1.9
148,959 - IAI46_00630 0.25 +0.7
148,989 + IAI46_00630 0.27 +0.8
148,990 - IAI46_00630 0.27 -0.4
149,018 + IAI46_00630 0.30 +1.3
149,019 - IAI46_00630 0.30 +0.7
149,051 + IAI46_00630 0.32 +0.3
149,052 - IAI46_00630 0.32 +2.6
149,133 + IAI46_00630 0.39 +0.7
149,134 - IAI46_00630 0.39 -0.3
149,134 - IAI46_00630 0.39 +1.3
149,136 + IAI46_00630 0.39 +0.2
149,137 - IAI46_00630 0.39 -0.1
149,350 - IAI46_00630 0.56 +1.4
149,350 - IAI46_00630 0.56 +1.2
149,382 + IAI46_00630 0.59 +1.0
149,470 - IAI46_00630 0.66 -0.2
149,470 - IAI46_00630 0.66 +0.8
149,481 - IAI46_00630 0.67 +0.7
149,557 + IAI46_00630 0.73 -1.5
149,584 + IAI46_00630 0.75 -1.0
149,663 - IAI46_00630 0.81 +0.1
149,672 - IAI46_00630 0.82 -0.5
149,689 - IAI46_00630 0.83 +0.3
149,689 - IAI46_00630 0.83 +1.6
149,689 - IAI46_00630 0.83 +1.1
149,689 - IAI46_00630 0.83 -0.0
149,736 - IAI46_00630 0.87 +0.7
149,827 - -1.1
149,827 - +1.6
149,862 - -0.4
149,880 + +0.1
149,893 + -0.3
149,893 + +0.7
149,893 + -0.5
149,913 + +0.4
150,011 - IAI46_00635 0.11 +1.0
150,011 - IAI46_00635 0.11 -0.3
150,164 - IAI46_00635 0.25 +0.5
150,164 - IAI46_00635 0.25 +2.0
150,164 - IAI46_00635 0.25 +0.2
150,221 - IAI46_00635 0.30 +0.3
150,221 - IAI46_00635 0.30 +0.6
150,275 + IAI46_00635 0.35 +0.6
150,275 + IAI46_00635 0.35 -0.9
150,276 - IAI46_00635 0.35 -1.8
150,334 + IAI46_00635 0.41 +2.2
150,335 - IAI46_00635 0.41 +0.1
150,337 + IAI46_00635 0.41 +1.0
150,337 + IAI46_00635 0.41 +0.5
150,337 + IAI46_00635 0.41 -0.9
150,338 - IAI46_00635 0.41 -0.4
150,344 + IAI46_00635 0.41 +0.7
150,344 + IAI46_00635 0.41 +1.0
150,344 + IAI46_00635 0.41 +1.6
150,383 + IAI46_00635 0.45 +0.3
150,384 - IAI46_00635 0.45 -0.0
150,427 - IAI46_00635 0.49 +0.6
150,494 - IAI46_00635 0.55 +0.0
150,494 - IAI46_00635 0.55 -0.4
150,581 + IAI46_00635 0.63 +1.0
150,581 + IAI46_00635 0.63 +0.3
150,582 - IAI46_00635 0.63 -0.0
150,582 - IAI46_00635 0.63 -1.7
150,582 - IAI46_00635 0.63 +0.6
150,582 - IAI46_00635 0.63 +0.7
150,583 + IAI46_00635 0.63 +1.5
150,583 + IAI46_00635 0.63 +1.0
150,584 - IAI46_00635 0.64 -0.1
150,584 - IAI46_00635 0.64 +1.2
150,594 + IAI46_00635 0.64 +2.3
150,610 - IAI46_00635 0.66 +0.1
150,676 + IAI46_00635 0.72 +1.0
150,701 + IAI46_00635 0.74 +0.6
150,701 + IAI46_00635 0.74 +0.3
150,713 - IAI46_00635 0.75 +3.2
150,729 + IAI46_00635 0.77 +0.1
150,833 + IAI46_00635 0.86 -0.4
150,834 - IAI46_00635 0.87 -0.2

Or see this region's nucleotide sequence