Strain Fitness in Serratia liquefaciens MT49 around IAI46_00255

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00250 and IAI46_00255 are separated by 219 nucleotidesIAI46_00255 and IAI46_00260 overlap by 6 nucleotidesIAI46_00260 and IAI46_00265 are separated by 2 nucleotides IAI46_00250: IAI46_00250 - MFS transporter, at 57,918 to 59,165 _00250 IAI46_00255: IAI46_00255 - acyltransferase, at 59,385 to 60,377 _00255 IAI46_00260: IAI46_00260 - DJ-1/PfpI family protein, at 60,372 to 61,295 _00260 IAI46_00265: IAI46_00265 - isochorismatase family protein, at 61,298 to 61,849 _00265 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 58.521 kb on + strand, within IAI46_00250at 58.521 kb on + strand, within IAI46_00250at 58.522 kb on - strand, within IAI46_00250at 58.522 kb on - strand, within IAI46_00250at 58.522 kb on - strand, within IAI46_00250at 58.609 kb on + strand, within IAI46_00250at 58.641 kb on + strand, within IAI46_00250at 58.642 kb on - strand, within IAI46_00250at 58.787 kb on - strand, within IAI46_00250at 58.803 kb on - strand, within IAI46_00250at 58.841 kb on + strand, within IAI46_00250at 58.841 kb on + strand, within IAI46_00250at 58.842 kb on - strand, within IAI46_00250at 58.842 kb on - strand, within IAI46_00250at 58.872 kb on - strand, within IAI46_00250at 58.984 kb on + strand, within IAI46_00250at 58.985 kb on - strand, within IAI46_00250at 59.037 kb on + strand, within IAI46_00250at 59.063 kb on + strandat 59.077 kb on + strandat 59.078 kb on - strandat 59.152 kb on - strandat 59.242 kb on + strandat 59.267 kb on - strandat 59.276 kb on - strandat 59.276 kb on - strandat 59.301 kb on + strandat 59.337 kb on + strandat 59.338 kb on - strandat 59.340 kb on - strandat 59.370 kb on - strandat 59.407 kb on + strandat 59.407 kb on + strandat 59.407 kb on + strandat 59.411 kb on + strandat 59.411 kb on + strandat 59.411 kb on + strandat 59.463 kb on + strandat 59.464 kb on - strandat 59.466 kb on + strandat 59.466 kb on + strandat 59.466 kb on + strandat 59.466 kb on + strandat 59.467 kb on - strandat 59.467 kb on - strandat 59.467 kb on - strandat 59.467 kb on - strandat 59.498 kb on + strand, within IAI46_00255at 59.498 kb on + strand, within IAI46_00255at 59.498 kb on + strand, within IAI46_00255at 59.499 kb on - strand, within IAI46_00255at 59.499 kb on - strand, within IAI46_00255at 59.499 kb on - strand, within IAI46_00255at 59.514 kb on - strand, within IAI46_00255at 59.630 kb on + strand, within IAI46_00255at 59.631 kb on - strand, within IAI46_00255at 59.631 kb on - strand, within IAI46_00255at 59.661 kb on + strand, within IAI46_00255at 59.661 kb on + strand, within IAI46_00255at 59.661 kb on + strand, within IAI46_00255at 59.663 kb on + strand, within IAI46_00255at 59.663 kb on + strand, within IAI46_00255at 59.710 kb on + strand, within IAI46_00255at 59.710 kb on + strand, within IAI46_00255at 59.710 kb on + strand, within IAI46_00255at 59.711 kb on - strand, within IAI46_00255at 59.711 kb on - strand, within IAI46_00255at 59.711 kb on - strand, within IAI46_00255at 59.730 kb on + strand, within IAI46_00255at 59.730 kb on + strand, within IAI46_00255at 59.731 kb on - strand, within IAI46_00255at 59.731 kb on - strand, within IAI46_00255at 59.748 kb on + strand, within IAI46_00255at 59.748 kb on + strand, within IAI46_00255at 59.766 kb on + strand, within IAI46_00255at 59.766 kb on + strand, within IAI46_00255at 59.767 kb on - strand, within IAI46_00255at 59.767 kb on - strand, within IAI46_00255at 59.811 kb on + strand, within IAI46_00255at 59.858 kb on + strand, within IAI46_00255at 59.859 kb on - strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.908 kb on - strand, within IAI46_00255at 59.909 kb on + strand, within IAI46_00255at 59.909 kb on + strand, within IAI46_00255at 59.909 kb on + strand, within IAI46_00255at 59.909 kb on + strand, within IAI46_00255at 59.909 kb on + strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.913 kb on + strand, within IAI46_00255at 59.913 kb on + strand, within IAI46_00255at 59.913 kb on + strand, within IAI46_00255at 59.913 kb on + strand, within IAI46_00255at 59.914 kb on - strand, within IAI46_00255at 59.914 kb on - strand, within IAI46_00255at 59.914 kb on - strand, within IAI46_00255at 59.914 kb on - strand, within IAI46_00255at 59.929 kb on - strand, within IAI46_00255at 59.940 kb on + strand, within IAI46_00255at 59.941 kb on - strand, within IAI46_00255at 60.007 kb on + strand, within IAI46_00255at 60.074 kb on + strand, within IAI46_00255at 60.075 kb on - strand, within IAI46_00255at 60.075 kb on - strand, within IAI46_00255at 60.086 kb on + strand, within IAI46_00255at 60.087 kb on - strand, within IAI46_00255at 60.090 kb on + strand, within IAI46_00255at 60.090 kb on + strand, within IAI46_00255at 60.090 kb on + strand, within IAI46_00255at 60.090 kb on + strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.093 kb on + strand, within IAI46_00255at 60.093 kb on + strand, within IAI46_00255at 60.093 kb on + strand, within IAI46_00255at 60.094 kb on - strand, within IAI46_00255at 60.094 kb on - strand, within IAI46_00255at 60.094 kb on - strand, within IAI46_00255at 60.099 kb on + strand, within IAI46_00255at 60.099 kb on + strand, within IAI46_00255at 60.099 kb on + strand, within IAI46_00255at 60.100 kb on - strand, within IAI46_00255at 60.100 kb on - strand, within IAI46_00255at 60.142 kb on + strand, within IAI46_00255at 60.142 kb on + strand, within IAI46_00255at 60.143 kb on - strand, within IAI46_00255at 60.170 kb on + strand, within IAI46_00255at 60.170 kb on + strand, within IAI46_00255at 60.231 kb on - strand, within IAI46_00255at 60.243 kb on - strand, within IAI46_00255at 60.287 kb on + strandat 60.287 kb on + strandat 60.288 kb on - strandat 60.353 kb on - strandat 60.375 kb on + strandat 60.460 kb on + strandat 60.460 kb on + strandat 60.460 kb on + strandat 60.512 kb on - strand, within IAI46_00260at 60.512 kb on - strand, within IAI46_00260at 60.535 kb on + strand, within IAI46_00260at 60.536 kb on - strand, within IAI46_00260at 60.536 kb on - strand, within IAI46_00260at 60.539 kb on + strand, within IAI46_00260at 60.539 kb on + strand, within IAI46_00260at 60.540 kb on - strand, within IAI46_00260at 60.540 kb on - strand, within IAI46_00260at 60.540 kb on - strand, within IAI46_00260at 60.721 kb on + strand, within IAI46_00260at 60.721 kb on + strand, within IAI46_00260at 60.722 kb on - strand, within IAI46_00260at 60.826 kb on + strand, within IAI46_00260at 60.826 kb on + strand, within IAI46_00260at 60.851 kb on + strand, within IAI46_00260at 60.852 kb on - strand, within IAI46_00260at 60.852 kb on - strand, within IAI46_00260at 60.928 kb on + strand, within IAI46_00260at 60.939 kb on + strand, within IAI46_00260at 60.977 kb on + strand, within IAI46_00260at 60.977 kb on + strand, within IAI46_00260at 60.977 kb on + strand, within IAI46_00260at 60.978 kb on - strand, within IAI46_00260at 60.978 kb on - strand, within IAI46_00260at 60.978 kb on - strand, within IAI46_00260at 61.104 kb on - strand, within IAI46_00260at 61.192 kb on + strand, within IAI46_00260at 61.299 kb on + strandat 61.299 kb on + strandat 61.299 kb on + strandat 61.299 kb on + strandat 61.300 kb on - strandat 61.300 kb on - strandat 61.300 kb on - strandat 61.375 kb on + strand, within IAI46_00265

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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58,521 + IAI46_00250 0.48 +0.2
58,521 + IAI46_00250 0.48 -0.3
58,522 - IAI46_00250 0.48 +1.4
58,522 - IAI46_00250 0.48 -1.2
58,522 - IAI46_00250 0.48 +0.2
58,609 + IAI46_00250 0.55 +0.2
58,641 + IAI46_00250 0.58 +0.9
58,642 - IAI46_00250 0.58 -0.3
58,787 - IAI46_00250 0.70 -1.1
58,803 - IAI46_00250 0.71 -0.5
58,841 + IAI46_00250 0.74 -1.2
58,841 + IAI46_00250 0.74 -0.5
58,842 - IAI46_00250 0.74 +0.1
58,842 - IAI46_00250 0.74 +0.6
58,872 - IAI46_00250 0.76 -1.1
58,984 + IAI46_00250 0.85 -0.1
58,985 - IAI46_00250 0.85 -0.5
59,037 + IAI46_00250 0.90 +0.5
59,063 + +0.4
59,077 + +0.4
59,078 - +0.4
59,152 - +0.0
59,242 + +0.2
59,267 - +0.4
59,276 - +0.4
59,276 - -0.1
59,301 + +0.3
59,337 + +0.4
59,338 - +0.2
59,340 - +1.6
59,370 - +0.2
59,407 + +0.0
59,407 + -0.8
59,407 + +0.0
59,411 + +0.4
59,411 + -1.4
59,411 + +0.6
59,463 + +0.3
59,464 - +0.5
59,466 + +0.0
59,466 + -0.2
59,466 + +1.2
59,466 + -0.4
59,467 - -0.6
59,467 - -0.1
59,467 - +0.7
59,467 - +0.5
59,498 + IAI46_00255 0.11 +0.3
59,498 + IAI46_00255 0.11 +0.1
59,498 + IAI46_00255 0.11 -0.7
59,499 - IAI46_00255 0.11 -0.4
59,499 - IAI46_00255 0.11 +0.3
59,499 - IAI46_00255 0.11 +0.3
59,514 - IAI46_00255 0.13 -2.0
59,630 + IAI46_00255 0.25 -0.2
59,631 - IAI46_00255 0.25 +0.9
59,631 - IAI46_00255 0.25 -0.4
59,661 + IAI46_00255 0.28 -0.1
59,661 + IAI46_00255 0.28 +0.5
59,661 + IAI46_00255 0.28 -0.3
59,663 + IAI46_00255 0.28 +0.8
59,663 + IAI46_00255 0.28 -0.4
59,710 + IAI46_00255 0.33 +1.2
59,710 + IAI46_00255 0.33 +0.9
59,710 + IAI46_00255 0.33 +0.5
59,711 - IAI46_00255 0.33 +0.1
59,711 - IAI46_00255 0.33 +2.0
59,711 - IAI46_00255 0.33 +0.1
59,730 + IAI46_00255 0.35 -0.2
59,730 + IAI46_00255 0.35 +0.9
59,731 - IAI46_00255 0.35 +0.2
59,731 - IAI46_00255 0.35 +0.3
59,748 + IAI46_00255 0.37 +0.7
59,748 + IAI46_00255 0.37 +1.2
59,766 + IAI46_00255 0.38 +0.1
59,766 + IAI46_00255 0.38 +0.1
59,767 - IAI46_00255 0.38 +0.2
59,767 - IAI46_00255 0.38 +0.3
59,811 + IAI46_00255 0.43 -0.3
59,858 + IAI46_00255 0.48 +0.7
59,859 - IAI46_00255 0.48 -0.9
59,907 + IAI46_00255 0.53 -1.1
59,907 + IAI46_00255 0.53 +0.7
59,907 + IAI46_00255 0.53 +1.0
59,907 + IAI46_00255 0.53 -0.6
59,907 + IAI46_00255 0.53 +0.5
59,907 + IAI46_00255 0.53 +0.0
59,907 + IAI46_00255 0.53 +0.1
59,908 - IAI46_00255 0.53 +1.2
59,909 + IAI46_00255 0.53 +0.2
59,909 + IAI46_00255 0.53 +0.6
59,909 + IAI46_00255 0.53 +0.2
59,909 + IAI46_00255 0.53 +0.3
59,909 + IAI46_00255 0.53 +1.0
59,910 - IAI46_00255 0.53 -0.9
59,910 - IAI46_00255 0.53 -0.0
59,910 - IAI46_00255 0.53 -0.3
59,910 - IAI46_00255 0.53 +1.1
59,910 - IAI46_00255 0.53 +0.2
59,910 - IAI46_00255 0.53 -1.5
59,910 - IAI46_00255 0.53 -0.0
59,910 - IAI46_00255 0.53 -1.1
59,913 + IAI46_00255 0.53 -0.9
59,913 + IAI46_00255 0.53 -0.2
59,913 + IAI46_00255 0.53 -0.7
59,913 + IAI46_00255 0.53 -0.1
59,914 - IAI46_00255 0.53 -0.5
59,914 - IAI46_00255 0.53 +0.1
59,914 - IAI46_00255 0.53 +0.4
59,914 - IAI46_00255 0.53 +0.4
59,929 - IAI46_00255 0.55 +0.3
59,940 + IAI46_00255 0.56 +0.1
59,941 - IAI46_00255 0.56 +1.3
60,007 + IAI46_00255 0.63 +1.0
60,074 + IAI46_00255 0.69 +0.3
60,075 - IAI46_00255 0.69 -0.7
60,075 - IAI46_00255 0.69 +0.1
60,086 + IAI46_00255 0.71 -0.1
60,087 - IAI46_00255 0.71 +0.0
60,090 + IAI46_00255 0.71 -0.7
60,090 + IAI46_00255 0.71 +0.5
60,090 + IAI46_00255 0.71 +0.3
60,090 + IAI46_00255 0.71 +0.4
60,091 - IAI46_00255 0.71 +0.6
60,091 - IAI46_00255 0.71 +0.3
60,091 - IAI46_00255 0.71 -0.4
60,091 - IAI46_00255 0.71 -0.1
60,091 - IAI46_00255 0.71 -0.4
60,091 - IAI46_00255 0.71 -0.7
60,093 + IAI46_00255 0.71 +0.7
60,093 + IAI46_00255 0.71 -0.6
60,093 + IAI46_00255 0.71 +0.1
60,094 - IAI46_00255 0.71 +0.6
60,094 - IAI46_00255 0.71 -0.6
60,094 - IAI46_00255 0.71 +0.0
60,099 + IAI46_00255 0.72 -0.0
60,099 + IAI46_00255 0.72 -0.4
60,099 + IAI46_00255 0.72 +1.5
60,100 - IAI46_00255 0.72 +0.2
60,100 - IAI46_00255 0.72 -0.2
60,142 + IAI46_00255 0.76 -0.1
60,142 + IAI46_00255 0.76 -0.7
60,143 - IAI46_00255 0.76 -1.1
60,170 + IAI46_00255 0.79 +1.3
60,170 + IAI46_00255 0.79 +0.4
60,231 - IAI46_00255 0.85 -0.2
60,243 - IAI46_00255 0.86 +0.4
60,287 + -0.2
60,287 + +0.6
60,288 - +0.1
60,353 - +0.2
60,375 + +0.2
60,460 + +0.7
60,460 + +0.0
60,460 + +0.1
60,512 - IAI46_00260 0.15 -0.1
60,512 - IAI46_00260 0.15 -0.7
60,535 + IAI46_00260 0.18 +0.7
60,536 - IAI46_00260 0.18 +0.1
60,536 - IAI46_00260 0.18 +0.8
60,539 + IAI46_00260 0.18 -1.8
60,539 + IAI46_00260 0.18 +0.1
60,540 - IAI46_00260 0.18 -0.0
60,540 - IAI46_00260 0.18 +1.8
60,540 - IAI46_00260 0.18 +0.3
60,721 + IAI46_00260 0.38 +0.3
60,721 + IAI46_00260 0.38 +0.1
60,722 - IAI46_00260 0.38 -0.4
60,826 + IAI46_00260 0.49 -0.9
60,826 + IAI46_00260 0.49 +0.6
60,851 + IAI46_00260 0.52 -0.2
60,852 - IAI46_00260 0.52 +0.3
60,852 - IAI46_00260 0.52 +0.4
60,928 + IAI46_00260 0.60 +0.1
60,939 + IAI46_00260 0.61 +0.4
60,977 + IAI46_00260 0.65 +0.4
60,977 + IAI46_00260 0.65 +0.1
60,977 + IAI46_00260 0.65 -0.6
60,978 - IAI46_00260 0.66 +0.9
60,978 - IAI46_00260 0.66 +0.3
60,978 - IAI46_00260 0.66 +0.4
61,104 - IAI46_00260 0.79 -0.2
61,192 + IAI46_00260 0.89 +0.1
61,299 + -0.5
61,299 + -0.3
61,299 + -0.1
61,299 + +0.5
61,300 - +0.4
61,300 - -0.2
61,300 - -0.0
61,375 + IAI46_00265 0.14 +0.3

Or see this region's nucleotide sequence