Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0595

Experiment: m.b. Nickel (II) chloride 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0593 and Echvi_0594 are separated by 41 nucleotidesEchvi_0594 and Echvi_0595 are separated by 33 nucleotidesEchvi_0595 and Echvi_0596 are separated by 172 nucleotides Echvi_0593: Echvi_0593 - Adenylate kinase and related kinases, at 670,997 to 671,569 _0593 Echvi_0594: Echvi_0594 - hypoxanthine phosphoribosyltransferase, at 671,611 to 672,192 _0594 Echvi_0595: Echvi_0595 - Cellulase M and related proteins, at 672,226 to 673,143 _0595 Echvi_0596: Echvi_0596 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 673,316 to 674,587 _0596 Position (kb) 672 673 674Strain fitness (log2 ratio) -3 -2 -1 0 1at 671.586 kb on - strandat 671.599 kb on - strandat 671.625 kb on - strandat 671.625 kb on - strandat 671.625 kb on - strandat 671.625 kb on - strandat 671.625 kb on - strandat 671.625 kb on - strandat 671.627 kb on - strandat 671.627 kb on - strandat 671.627 kb on - strandat 671.627 kb on - strandat 671.627 kb on - strandat 671.709 kb on - strand, within Echvi_0594at 671.732 kb on - strand, within Echvi_0594at 671.843 kb on - strand, within Echvi_0594at 671.849 kb on - strand, within Echvi_0594at 671.849 kb on - strand, within Echvi_0594at 671.849 kb on - strand, within Echvi_0594at 671.854 kb on - strand, within Echvi_0594at 671.854 kb on - strand, within Echvi_0594at 671.941 kb on - strand, within Echvi_0594at 672.042 kb on - strand, within Echvi_0594at 672.105 kb on - strand, within Echvi_0594at 672.105 kb on - strand, within Echvi_0594at 672.142 kb on - strandat 672.180 kb on - strandat 672.184 kb on - strandat 672.223 kb on + strandat 672.227 kb on + strandat 672.229 kb on + strandat 672.245 kb on + strandat 672.245 kb on + strandat 672.251 kb on + strandat 672.252 kb on - strandat 672.252 kb on - strandat 672.253 kb on + strandat 672.303 kb on + strandat 672.303 kb on + strandat 672.304 kb on - strandat 672.331 kb on - strand, within Echvi_0595at 672.350 kb on + strand, within Echvi_0595at 672.350 kb on + strand, within Echvi_0595at 672.351 kb on - strand, within Echvi_0595at 672.397 kb on + strand, within Echvi_0595at 672.398 kb on - strand, within Echvi_0595at 672.471 kb on + strand, within Echvi_0595at 672.534 kb on + strand, within Echvi_0595at 672.534 kb on + strand, within Echvi_0595at 672.535 kb on - strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.627 kb on + strand, within Echvi_0595at 672.627 kb on + strand, within Echvi_0595at 672.678 kb on + strand, within Echvi_0595at 672.678 kb on + strand, within Echvi_0595at 672.679 kb on - strand, within Echvi_0595at 672.680 kb on + strand, within Echvi_0595at 672.680 kb on + strand, within Echvi_0595at 672.680 kb on + strand, within Echvi_0595at 672.681 kb on - strand, within Echvi_0595at 672.681 kb on - strand, within Echvi_0595at 672.700 kb on + strand, within Echvi_0595at 672.701 kb on - strand, within Echvi_0595at 672.701 kb on - strand, within Echvi_0595at 672.701 kb on - strand, within Echvi_0595at 672.750 kb on - strand, within Echvi_0595at 672.750 kb on - strand, within Echvi_0595at 672.818 kb on - strand, within Echvi_0595at 672.818 kb on - strand, within Echvi_0595at 672.822 kb on + strand, within Echvi_0595at 672.822 kb on + strand, within Echvi_0595at 672.823 kb on - strand, within Echvi_0595at 672.830 kb on - strand, within Echvi_0595at 672.981 kb on + strand, within Echvi_0595at 672.982 kb on - strand, within Echvi_0595at 672.987 kb on + strand, within Echvi_0595at 672.988 kb on - strand, within Echvi_0595at 673.055 kb on + strandat 673.158 kb on + strandat 673.424 kb on - strandat 673.455 kb on - strand, within Echvi_0596at 673.455 kb on - strand, within Echvi_0596at 673.589 kb on + strand, within Echvi_0596at 673.623 kb on + strand, within Echvi_0596at 673.669 kb on - strand, within Echvi_0596at 673.669 kb on - strand, within Echvi_0596at 673.702 kb on - strand, within Echvi_0596at 673.733 kb on - strand, within Echvi_0596at 673.745 kb on + strand, within Echvi_0596at 673.778 kb on - strand, within Echvi_0596at 673.890 kb on - strand, within Echvi_0596at 673.971 kb on - strand, within Echvi_0596at 673.974 kb on + strand, within Echvi_0596

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
remove
671,586 - -0.2
671,599 - -0.4
671,625 - -0.8
671,625 - -0.4
671,625 - +0.1
671,625 - -0.2
671,625 - +0.5
671,625 - +0.4
671,627 - -0.1
671,627 - +0.9
671,627 - -0.0
671,627 - -0.3
671,627 - -0.2
671,709 - Echvi_0594 0.17 +0.1
671,732 - Echvi_0594 0.21 +0.3
671,843 - Echvi_0594 0.40 -1.5
671,849 - Echvi_0594 0.41 -1.0
671,849 - Echvi_0594 0.41 -0.5
671,849 - Echvi_0594 0.41 +0.8
671,854 - Echvi_0594 0.42 +0.5
671,854 - Echvi_0594 0.42 -0.1
671,941 - Echvi_0594 0.57 -0.1
672,042 - Echvi_0594 0.74 -0.2
672,105 - Echvi_0594 0.85 -0.0
672,105 - Echvi_0594 0.85 +1.7
672,142 - -0.0
672,180 - -1.2
672,184 - +0.2
672,223 + -0.4
672,227 + -0.5
672,229 + -0.3
672,245 + -0.7
672,245 + -0.6
672,251 + -1.6
672,252 - -1.1
672,252 - +0.4
672,253 + -0.1
672,303 + +0.0
672,303 + +0.7
672,304 - +0.2
672,331 - Echvi_0595 0.11 -1.2
672,350 + Echvi_0595 0.14 +0.6
672,350 + Echvi_0595 0.14 -2.2
672,351 - Echvi_0595 0.14 -1.7
672,397 + Echvi_0595 0.19 -0.3
672,398 - Echvi_0595 0.19 -2.5
672,471 + Echvi_0595 0.27 -1.7
672,534 + Echvi_0595 0.34 -0.1
672,534 + Echvi_0595 0.34 -0.5
672,535 - Echvi_0595 0.34 -0.4
672,581 + Echvi_0595 0.39 -0.2
672,581 + Echvi_0595 0.39 -0.2
672,581 + Echvi_0595 0.39 -0.8
672,581 + Echvi_0595 0.39 +0.7
672,581 + Echvi_0595 0.39 -0.0
672,581 + Echvi_0595 0.39 -0.8
672,581 + Echvi_0595 0.39 +0.5
672,581 + Echvi_0595 0.39 -1.0
672,581 + Echvi_0595 0.39 -0.1
672,581 + Echvi_0595 0.39 -0.8
672,581 + Echvi_0595 0.39 -0.1
672,582 - Echvi_0595 0.39 -1.1
672,582 - Echvi_0595 0.39 -3.0
672,582 - Echvi_0595 0.39 -1.1
672,582 - Echvi_0595 0.39 -2.0
672,582 - Echvi_0595 0.39 -2.3
672,582 - Echvi_0595 0.39 -1.0
672,582 - Echvi_0595 0.39 +0.6
672,582 - Echvi_0595 0.39 +0.3
672,627 + Echvi_0595 0.44 +0.1
672,627 + Echvi_0595 0.44 +0.2
672,678 + Echvi_0595 0.49 -0.1
672,678 + Echvi_0595 0.49 +0.3
672,679 - Echvi_0595 0.49 -1.0
672,680 + Echvi_0595 0.49 -0.0
672,680 + Echvi_0595 0.49 +1.4
672,680 + Echvi_0595 0.49 -0.2
672,681 - Echvi_0595 0.50 -0.4
672,681 - Echvi_0595 0.50 -0.8
672,700 + Echvi_0595 0.52 +0.1
672,701 - Echvi_0595 0.52 -0.5
672,701 - Echvi_0595 0.52 -1.5
672,701 - Echvi_0595 0.52 -1.7
672,750 - Echvi_0595 0.57 -1.4
672,750 - Echvi_0595 0.57 -1.7
672,818 - Echvi_0595 0.64 +1.7
672,818 - Echvi_0595 0.64 -1.2
672,822 + Echvi_0595 0.65 +0.9
672,822 + Echvi_0595 0.65 +0.7
672,823 - Echvi_0595 0.65 -1.1
672,830 - Echvi_0595 0.66 +0.6
672,981 + Echvi_0595 0.82 +0.5
672,982 - Echvi_0595 0.82 -1.5
672,987 + Echvi_0595 0.83 +1.6
672,988 - Echvi_0595 0.83 -0.3
673,055 + +0.4
673,158 + +0.5
673,424 - -2.8
673,455 - Echvi_0596 0.11 -1.3
673,455 - Echvi_0596 0.11 -3.0
673,589 + Echvi_0596 0.21 -2.5
673,623 + Echvi_0596 0.24 -2.9
673,669 - Echvi_0596 0.28 -0.7
673,669 - Echvi_0596 0.28 -3.6
673,702 - Echvi_0596 0.30 -1.2
673,733 - Echvi_0596 0.33 -1.7
673,745 + Echvi_0596 0.34 -2.5
673,778 - Echvi_0596 0.36 -2.4
673,890 - Echvi_0596 0.45 -3.0
673,971 - Echvi_0596 0.51 -0.5
673,974 + Echvi_0596 0.52 -2.5

Or see this region's nucleotide sequence